BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780926|ref|YP_003065339.1| hypothetical protein
CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62]
(49 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040603|gb|ACT57399.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 49
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49
MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN
Sbjct: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49
>gi|315122648|ref|YP_004063137.1| hypothetical protein CKC_04500 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496050|gb|ADR52649.1| hypothetical protein CKC_04500 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 50
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 30/36 (83%)
Query: 14 ACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49
+ RKK+D QEERKIRLA MLRKNL RRK QARLK+
Sbjct: 15 SAKRKKVDVQEERKIRLAYMLRKNLRRRKDQARLKD 50
>gi|294010137|ref|YP_003543597.1| hypothetical protein SJA_C1-01510 [Sphingobium japonicum UT26S]
gi|292673467|dbj|BAI94985.1| hypothetical protein SJA_C1-01510 [Sphingobium japonicum UT26S]
Length = 56
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 13 FACGRKKIDAQEERKIRLASMLRKNLHRRKGQAR 46
F GR + Q+ERK RLA LR NL RRK Q+R
Sbjct: 7 FDYGRAMTNGQDERKERLAQALRDNLRRRKAQSR 40
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040603|gb|ACT57399.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 49
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49
MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN
Sbjct: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49
>gi|315122648|ref|YP_004063137.1| hypothetical protein CKC_04500 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496050|gb|ADR52649.1| hypothetical protein CKC_04500 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 50
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 27/36 (75%), Positives = 30/36 (83%)
Query: 14 ACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49
+ RKK+D QEERKIRLA MLRKNL RRK QARLK+
Sbjct: 15 SAKRKKVDVQEERKIRLAYMLRKNLRRRKDQARLKD 50
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.313 0.137 0.369
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 857,948,233
Number of Sequences: 14124377
Number of extensions: 23614480
Number of successful extensions: 65707
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 65677
Number of HSP's gapped (non-prelim): 34
length of query: 49
length of database: 4,842,793,630
effective HSP length: 22
effective length of query: 27
effective length of database: 4,532,057,336
effective search space: 122365548072
effective search space used: 122365548072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 76 (33.9 bits)