BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62] (49 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62] gi|254040603|gb|ACT57399.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62] Length = 49 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/49 (100%), Positives = 49/49 (100%) Query: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN Sbjct: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49 >gi|315122648|ref|YP_004063137.1| hypothetical protein CKC_04500 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496050|gb|ADR52649.1| hypothetical protein CKC_04500 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 50 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/36 (75%), Positives = 30/36 (83%) Query: 14 ACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49 + RKK+D QEERKIRLA MLRKNL RRK QARLK+ Sbjct: 15 SAKRKKVDVQEERKIRLAYMLRKNLRRRKDQARLKD 50 >gi|294010137|ref|YP_003543597.1| hypothetical protein SJA_C1-01510 [Sphingobium japonicum UT26S] gi|292673467|dbj|BAI94985.1| hypothetical protein SJA_C1-01510 [Sphingobium japonicum UT26S] Length = 56 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 13 FACGRKKIDAQEERKIRLASMLRKNLHRRKGQAR 46 F GR + Q+ERK RLA LR NL RRK Q+R Sbjct: 7 FDYGRAMTNGQDERKERLAQALRDNLRRRKAQSR 40 Searching..................................................done Results from round 2 CONVERGED! >gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62] gi|254040603|gb|ACT57399.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62] Length = 49 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 49/49 (100%), Positives = 49/49 (100%) Query: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN Sbjct: 1 MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49 >gi|315122648|ref|YP_004063137.1| hypothetical protein CKC_04500 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496050|gb|ADR52649.1| hypothetical protein CKC_04500 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 50 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 27/36 (75%), Positives = 30/36 (83%) Query: 14 ACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49 + RKK+D QEERKIRLA MLRKNL RRK QARLK+ Sbjct: 15 SAKRKKVDVQEERKIRLAYMLRKNLRRRKDQARLKD 50 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.137 0.369 Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 857,948,233 Number of Sequences: 14124377 Number of extensions: 23614480 Number of successful extensions: 65707 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 65677 Number of HSP's gapped (non-prelim): 34 length of query: 49 length of database: 4,842,793,630 effective HSP length: 22 effective length of query: 27 effective length of database: 4,532,057,336 effective search space: 122365548072 effective search space used: 122365548072 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 76 (33.9 bits)