RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780926|ref|YP_003065339.1| hypothetical protein
CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)



>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 185

 Score = 25.2 bits (55), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%)

Query: 12  DFACGRKKIDAQEERKIRLASMLRKNLHRR 41
           +F C  K++     R  RL  +L K + RR
Sbjct: 136 NFLCVHKQL-----RSKRLTPVLIKEITRR 160


>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA
          reductase {Pseudomonas mevalonii [TaxId: 32044]}
          Length = 110

 Score = 24.0 bits (52), Expect = 3.7
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 9  DNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQAR 46
             D    R  +  +++  I LA+   + L+   G  R
Sbjct: 10 GIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCR 47


>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast
           (Candida albicans) [TaxId: 5476]}
          Length = 165

 Score = 23.6 bits (51), Expect = 5.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)

Query: 12  DFACGRKKIDAQEERKIRLASMLRKNLHRR 41
           +F C  KK+     R  RLA +L K + RR
Sbjct: 116 NFLCIHKKL-----RNKRLAPVLIKEITRR 140


>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 133

 Score = 23.3 bits (50), Expect = 5.3
 Identities = 4/23 (17%), Positives = 10/23 (43%)

Query: 9   DNDDFACGRKKIDAQEERKIRLA 31
             D  +C  + +   E+  + +A
Sbjct: 108 TEDRLSCFAQTVSPAEKWSVHIA 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 171,677
Number of extensions: 5310
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 9
Length of query: 49
Length of database: 2,407,596
Length adjustment: 21
Effective length of query: 28
Effective length of database: 2,119,266
Effective search space: 59339448
Effective search space used: 59339448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)