RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62] (49 letters) >d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 185 Score = 25.2 bits (55), Expect = 1.4 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%) Query: 12 DFACGRKKIDAQEERKIRLASMLRKNLHRR 41 +F C K++ R RL +L K + RR Sbjct: 136 NFLCVHKQL-----RSKRLTPVLIKEITRR 160 >d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Length = 110 Score = 24.0 bits (52), Expect = 3.7 Identities = 8/38 (21%), Positives = 15/38 (39%) Query: 9 DNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQAR 46 D R + +++ I LA+ + L+ G R Sbjct: 10 GIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCR 47 >d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]} Length = 165 Score = 23.6 bits (51), Expect = 5.3 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%) Query: 12 DFACGRKKIDAQEERKIRLASMLRKNLHRR 41 +F C KK+ R RLA +L K + RR Sbjct: 116 NFLCIHKKL-----RNKRLAPVLIKEITRR 140 >d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Score = 23.3 bits (50), Expect = 5.3 Identities = 4/23 (17%), Positives = 10/23 (43%) Query: 9 DNDDFACGRKKIDAQEERKIRLA 31 D +C + + E+ + +A Sbjct: 108 TEDRLSCFAQTVSPAEKWSVHIA 130 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 171,677 Number of extensions: 5310 Number of successful extensions: 17 Number of sequences better than 10.0: 1 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 9 Length of query: 49 Length of database: 2,407,596 Length adjustment: 21 Effective length of query: 28 Effective length of database: 2,119,266 Effective search space: 59339448 Effective search space used: 59339448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.3 bits)