BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780926|ref|YP_003065339.1| hypothetical protein
CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 49

 Score = 98.6 bits (244), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 1  MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49
          MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN
Sbjct: 1  MKIGSNQDDNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQARLKN 49


>gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 502

 Score = 21.2 bits (43), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 6   NQDDNDDFACGRKKIDAQEERKIRLASMLRKNLH 39
           +++  DDF    K     EE K+ + + LR+  H
Sbjct: 469 SEESIDDFCVQSKPTVKCEEDKLEIPAFLRRQSH 502


>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 817

 Score = 21.2 bits (43), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 6   NQDDNDDFACGRKKIDAQEERKIRLASM 33
           N D ND F    K+ID +++    LAS+
Sbjct: 319 NYDQNDGFRGPIKRIDLKKDWGNTLASI 346


>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 231

 Score = 20.8 bits (42), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 26 RKIRLASMLRKNLHRRKGQARLKN 49
          ++IR+AS    NL  + G A  KN
Sbjct: 5  QRIRIASWNINNLSEKSGVALFKN 28


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.133    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,702
Number of Sequences: 1233
Number of extensions: 730
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 49
length of database: 328,796
effective HSP length: 22
effective length of query: 27
effective length of database: 301,670
effective search space:  8145090
effective search space used:  8145090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)