HHsearch alignment for GI: 254780927 and conserved domain: PRK04204

>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional.
Probab=95.23  E-value=0.018  Score=35.56  Aligned_cols=121  Identities=17%  Similarity=0.233  Sum_probs=63.6

Q ss_pred             HHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf             999999746996999869836-------9999999999974-98999927741142024525999436665864440234
Q gi|254780927|r   27 PVMIASLLTSETLTLENIPDL-------ADVKLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV   98 (430)
Q Consensus        27 Ral~aaaLa~g~s~i~n~~~s-------~D~~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (430)
T Consensus        18 ~alaLS~itgkpi~I~nIRa~R~~PGL~~QHl~~l~l~~~i~~a~v~g~~~G-------St~l~F~Pg~i~~g~~~-~d~   89 (339)
T PRK04204         18 TALSLSAITGKPVRITNIRAGRKKPGLLRQHLTAVKAAAEICNAEVEGAELG-------SQELVFIPGPIRGGDYR-FDI   89 (339)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECC-------CEEEEEECCCCCCCEEE-EEC
T ss_conf             9999999868987999735799898951999999999999709868622359-------65799968864586489-855


Q ss_pred             HHCCCCCCCCCCC----CCCCCCEEEECCCCCCCC-CCHHHHH----HHHHHHCCCCCCC---CCCCEE
Q ss_conf             3113211022533----233321045305866333-2012123----4333210332245---686148
Q gi|254780927|r   99 SKMRASFWVIGPL----LAREGYARISLPGGCAIG-TRPVDLF----VDSLKSLGVVIKI---DGGYVD  155 (430)
Q Consensus        99 ~~~r~s~~~l~~l----la~~~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa~i~~---~~g~~p  155 (430)
T Consensus        90 gTAgSi~L~lQ~~Lp~l~f~~~~~~l~l~GGT~v~~sPs~Dy~~~v~lP~l~~~G~~~~l~v~kRGfyP  158 (339)
T PRK04204         90 GTAGSITLVLQTLLPALLFADGPSRVTISGGTDVPWAPPIDYIRRVFLPLLARMGIRVEIELLRRGFYP  158 (339)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             887312478999999998679965999984348999989899999999999971986799998536788