HHsearch alignment for GI: 254780927 and conserved domain: TIGR03400
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=94.76 E-value=0.21 Score=28.69 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHC--CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCCCCHHHH-
Q ss_conf 4333210--332245686148999502443333333434666113----5665044446873323-----322201599-
Q gi|254780927|r 137 VDSLKSL--GVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAAREPEVV- 204 (430)
Q Consensus 137 ~~~L~~l--Ga~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~~~P~i~- 204 (430)
T Consensus 45 l~l~~~i~~g~~~~~~~~~t~l~f~Pg~i~gg~~~~d~~tagsi~l~lq~~lp~~~f~~~~~~l~l~GgT~~~~~psvD~ 124 (360)
T TIGR03400 45 LRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHECPTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDT 124 (360)
T ss_pred HHHHHHHCCCCEECCCCCCEEEEEECCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 99999853854840214715999978812187279966888430899999998886369976999975038998976899
Q ss_pred ---HHHHHHHCCCCC
Q ss_conf ---899875014544
Q gi|254780927|r 205 ---DLAHCLNSMGAK 216 (430)
Q Consensus 205 ---~t~~~L~~~Gv~ 216 (430)
T Consensus 125 ~~~v~lp~l~~fGi~ 139 (360)
T TIGR03400 125 IRTATLPLLKKFGIP 139 (360)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999982998