HHsearch alignment for GI: 254780927 and conserved domain: cd00875
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=95.03 E-value=0.29 Score=27.75 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHHC--CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 899999999746996999869836-------9999999999974--9899992774114202452599943666586444
Q gi|254780927|r 24 ASLPVMIASLLTSETLTLENIPDL-------ADVKLLIRILRSH--GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGS 94 (430)
Q Consensus 24 ~s~Ral~aaaLa~g~s~i~n~~~s-------~D~~~~~~~l~~l--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (430)
T Consensus 12 ~lR~~l~LS~l~gkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~it~g~~~~~~~~s--------t~l~f~Pg~i~gg~~~ 83 (341)
T cd00875 12 FFRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTG--------TTLIYKPGLITGGVLN 83 (341)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCC--------EEEEEECCCEECCCEE
T ss_conf 99999999997499879998568996998579999999999996186485143483--------3899979821078569
Q ss_pred HHHHHHCCCCCCCCCCCC--CCC--CCEEEECCCCCCCC-CCHHHHH----HHHHHHCCC
Q ss_conf 023431132110225332--333--21045305866333-2012123----433321033
Q gi|254780927|r 95 YDLVSKMRASFWVIGPLL--ARE--GYARISLPGGCAIG-TRPVDLF----VDSLKSLGV 145 (430)
Q Consensus 95 ~~~~~~~r~s~~~l~~ll--a~~--~~~~v~l~G~~~l~-~RP~~~l----~~~L~~lGa 145 (430)
T Consensus 84 -~d~~ta~si~l~lq~ll~l~~f~~~~~~l~l~GgT~~~~~psvD~~~~v~lp~l~~fGi 142 (341)
T cd00875 84 -HDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGI 142 (341)
T ss_pred -EECCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf -96788634099999999999747997399999256999998989999999999998589