HHsearch alignment for GI: 254780927 and conserved domain: pfam01137
>pfam01137 RTC RNA 3'-terminal phosphate cyclase. RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids.
Probab=93.89 E-value=0.054 Score=32.50 Aligned_cols=121 Identities=22% Similarity=0.262 Sum_probs=62.7
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHH-------HHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 999999746996999869836999-------9999999974-98999927741142024525999436665864440234
Q gi|254780927|r 27 PVMIASLLTSETLTLENIPDLADV-------KLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV 98 (430)
Q Consensus 27 Ral~aaaLa~g~s~i~n~~~s~D~-------~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
T Consensus 15 ~alaLS~ltgkpi~I~nIR~~R~~PGL~~qhl~~i~ll~~i~~~~~~g~~~g-------st~l~F~Pg~i~gg~~~-~d~ 86 (330)
T pfam01137 15 TALALSALTGKPVRIVNIRANRPNPGLRRQHLSAVRALAKITNAEVEGAEVG-------STELEFRPGTIRGGDYR-VDI 86 (330)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-------CEEEEECCCCCCCCEEE-EEC
T ss_conf 9999999768977998368998798857999999999999709737302548-------57999828745687079-966
Q ss_pred HHCCCCCCCCCCCC--C--CCCCEEEECCCCCCCC-CCHHHH----HHHHHHHCCCCCCC---CCCCEE
Q ss_conf 31132110225332--3--3321045305866333-201212----34333210332245---686148
Q gi|254780927|r 99 SKMRASFWVIGPLL--A--REGYARISLPGGCAIG-TRPVDL----FVDSLKSLGVVIKI---DGGYVD 155 (430)
Q Consensus 99 ~~~r~s~~~l~~ll--a--~~~~~~v~l~G~~~l~-~RP~~~----l~~~L~~lGa~i~~---~~g~~p 155 (430)
T Consensus 87 ~tagsi~L~lq~llp~l~f~~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~~G~~~~l~i~kRGfyP 155 (330)
T pfam01137 87 GTAGSITLVLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGELKVLRRGFYP 155 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 887416899999999997579975999986679999989899999999999973996699999656788