HHsearch alignment for GI: 254780927 and conserved domain: pfam01137

>pfam01137 RTC RNA 3'-terminal phosphate cyclase. RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids.
Probab=93.89  E-value=0.054  Score=32.50  Aligned_cols=121  Identities=22%  Similarity=0.262  Sum_probs=62.7

Q ss_pred             HHHHHHHHCCCCEEEECCCCHHHH-------HHHHHHHHHC-CCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHH
Q ss_conf             999999746996999869836999-------9999999974-98999927741142024525999436665864440234
Q gi|254780927|r   27 PVMIASLLTSETLTLENIPDLADV-------KLLIRILRSH-GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLV   98 (430)
Q Consensus        27 Ral~aaaLa~g~s~i~n~~~s~D~-------~~~~~~l~~l-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (430)
T Consensus        15 ~alaLS~ltgkpi~I~nIR~~R~~PGL~~qhl~~i~ll~~i~~~~~~g~~~g-------st~l~F~Pg~i~gg~~~-~d~   86 (330)
T pfam01137        15 TALALSALTGKPVRIVNIRANRPNPGLRRQHLSAVRALAKITNAEVEGAEVG-------STELEFRPGTIRGGDYR-VDI   86 (330)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-------CEEEEECCCCCCCCEEE-EEC
T ss_conf             9999999768977998368998798857999999999999709737302548-------57999828745687079-966


Q ss_pred             HHCCCCCCCCCCCC--C--CCCCEEEECCCCCCCC-CCHHHH----HHHHHHHCCCCCCC---CCCCEE
Q ss_conf             31132110225332--3--3321045305866333-201212----34333210332245---686148
Q gi|254780927|r   99 SKMRASFWVIGPLL--A--REGYARISLPGGCAIG-TRPVDL----FVDSLKSLGVVIKI---DGGYVD  155 (430)
Q Consensus        99 ~~~r~s~~~l~~ll--a--~~~~~~v~l~G~~~l~-~RP~~~----l~~~L~~lGa~i~~---~~g~~p  155 (430)
T Consensus        87 ~tagsi~L~lq~llp~l~f~~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~~G~~~~l~i~kRGfyP  155 (330)
T pfam01137        87 GTAGSITLVLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGELKVLRRGFYP  155 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             887416899999999997579975999986679999989899999999999973996699999656788