HHsearch alignment for GI: 254780927 and conserved domain: pfam01137
>pfam01137 RTC RNA 3'-terminal phosphate cyclase. RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids.
Probab=93.89 E-value=0.48 Score=26.31 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=53.1
Q ss_pred HHHHHHHHC----CCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCEE----EEEEECCCCCCCCCCC-----CCCCC
Q ss_conf 234333210----332245-686148999502443333333434666113----5665044446873323-----32220
Q gi|254780927|r 135 LFVDSLKSL----GVVIKI-DGGYVDARVSSKGLRGTSYTFPKVSVGATQ----VMMMVASLSHGDTSIY-----NAARE 200 (430)
Q Consensus 135 ~l~~~L~~l----Ga~i~~-~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s----~lLlaA~~a~G~t~I~-----~~~~~ 200 (430)
T Consensus 44 qhl~~i~ll~~i~~~~~~g~~~gst~l~F~Pg~i~gg~~~~d~~tagsi~L~lq~llp~l~f~~~~~~l~l~GgT~v~~s 123 (330)
T pfam01137 44 QHLSAVRALAKITNAEVEGAEVGSTELEFRPGTIRGGDYRVDIGTAGSITLVLQTLLPLLLFAKGPSRITLKGGTDVPWA 123 (330)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99999999999709737302548579998287456870799668874168999999999975799759999866799999
Q ss_pred HHHH----HHHHHHHCCCCCCC
Q ss_conf 1599----89987501454432
Q gi|254780927|r 201 PEVV----DLAHCLNSMGAKIS 218 (430)
Q Consensus 201 P~i~----~t~~~L~~~Gv~I~ 218 (430)
T Consensus 124 PsvDy~~~v~lP~l~~~G~~~~ 145 (330)
T pfam01137 124 PPVDYIRNVTLPLLEKFGIEGE 145 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEE
T ss_conf 8989999999999997399669