HHsearch results for GI: 254780927 and protein with PDBid: 1rf6_A
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=0 Score=632.88 Aligned_cols=405 Identities=22% Similarity=0.303 Sum_probs=349.5
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEE
Q ss_conf 38982797313789769646689999999974699699986983699999999999749899992774114202452599
Q gi|254780927|r 3 RIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMH 82 (430)
Q Consensus 3 ~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~ 82 (430)
|++++ +++|+|+|++|||||++||+|++|+|++|+|+|+|+|+|+|+.+|+++||+||++|+++++...+...+...
T Consensus 2 ~~~~~-~~~l~G~v~~pgSKS~s~R~Li~aaLa~g~s~i~n~~~s~Dv~~~i~~L~~lG~~i~~~~~~~~i~g~g~~~-- 78 (427)
T 1rf6_A 2 KLKTN-IRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAG-- 78 (427)
T ss_dssp EECCC-CCCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCSSC--
T ss_pred CCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCC--
T ss_conf 52367-877079998379689999999999976998999279903999999999997899899649999999068877--
Q ss_pred EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEEC
Q ss_conf 9436665864440234311321102253323332104530586633320121234333210332245--68614899950
Q gi|254780927|r 83 FRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSS 160 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~g 160 (430)
.........++++++++||+.++++... +.+.++|+|+|++|||++|+++|++|||++++ +++++|+.+.|
T Consensus 79 ------~~~~~~~i~~g~sgt~~r~l~~~~a~~~-~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g 151 (427)
T 1rf6_A 79 ------LKAPQNALNMGNSGTSIRLISGVLAGAD-FEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKG 151 (427)
T ss_dssp ------CCCCSSCEECTTCHHHHHHHHHHGGGCS-SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEEC
T ss_pred ------CCCCHHHHHHCCCCEEEECCCCCCCCCC-CEECCCCCHHHHCCCCCHHHHHHHHCCCEEEECCCCCCCEEECCC
T ss_conf ------6786266775344311000222111214-333466886662653201234577428479831355630121147
Q ss_pred C-CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCE
Q ss_conf 2-443333333434666113566504444687332332220159989987501454432024432120255422223420
Q gi|254780927|r 161 K-GLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHR 239 (430)
Q Consensus 161 ~-~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~ 239 (430)
. .+++.++.++.+|+|+++++||+|++++|.++|.+ .+||+.+|++||++||++++..+ +++.|+|++.|++.+|+
T Consensus 152 ~~~~~~~~~~~~~~S~~~~s~Lllaa~~~~g~~~i~~--~~~~~~~t~~~L~~~G~~i~~~~-~~i~i~~~~~~~~~~~~ 228 (427)
T 1rf6_A 152 TKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIE--KEYTRNHTEDMLQQFGGHLSVDG-KKITVQGPQKLTGQKVV 228 (427)
T ss_dssp CTTCCCCEEECSSCCHHHHHHHHHHHTTSSEEEEEEC--SSCCCCHHHHHHHHTTCCCEEET-TEEEEEECCCCBCCEEE
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCEEECCCCEEEEC--CCCHHHHHHHHHHHCCCCCCCCC-EEEEECCCEEECCCEEE
T ss_conf 7887555995357777551102110121588445632--34105678999986298421231-18998752132674699
Q ss_pred ECCCCHHCCHHHHHCCCC-CCCEEEECCCCCCCCC-HHHHHHHCCCCEEEECCCE-----EEEECCCCCCEEEEECCCCC
Q ss_conf 014310000100000124-4420100234564210-4688975267436744512-----67532676431576215356
Q gi|254780927|r 240 ILPDRIEAGTYAMAVAMT-GGDVILKMTDSSLLKT-VFKVMRQTGVDIDIIDEGI-----RVRWNGEKLRPVDVITAPFP 312 (430)
Q Consensus 240 V~~D~ssAa~fl~Aaalt-~g~i~i~n~~~~~~~~-~l~iL~~mGa~i~~~~~~i-----~V~~~~~~l~~~di~~~~~p 312 (430)
||+|||+|+||+++|+++ +++++++|++.++.+. ++++|++||+.+++.+... ........++++++++.++|
T Consensus 229 Vp~D~s~a~~~l~~aal~~g~~i~i~n~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 308 (427)
T 1rf6_A 229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIP 308 (427)
T ss_dssp CCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHHHHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGG
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 17977889999999996699879987789652247898865422541120243222124532021267442223444587
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHHH-HHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC-CHHHH
Q ss_conf 6642101346676313566416732----0465-675667-889748858999789699988898510156608-18999
Q gi|254780927|r 313 GFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMHV-QELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRAS 385 (430)
Q Consensus 313 g~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~~-~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~-DHRia 385 (430)
++ +|++|++++++++|+|+|+|++ +++| ||+..+ +||+|||+++++++|+++|+|++.++|++|+++ |||+|
T Consensus 309 ~~-~d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~G~~~l~~~~v~t~~DHR~a 387 (427)
T 1rf6_A 309 RL-IDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIG 387 (427)
T ss_dssp GT-GGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCCCCCEEEECTTCHHHH
T ss_pred CC-HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCHHHH
T ss_conf 63-34433555652035773255006777878757999999999977997999899999979998857877888809999
Q ss_pred HHHHHHHHH-CCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 999999985-498199924330117784878899866
Q gi|254780927|r 386 VSLVIAALA-AQGETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 386 Ma~~ia~L~-a~g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
|||++|||. ++|+++|+|++||+||||+||++|++|
T Consensus 388 ma~~i~al~~~~g~~~I~~~~~v~ksyP~F~~~l~~L 424 (427)
T 1rf6_A 388 MMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESL 424 (427)
T ss_dssp HHHHHHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEECCCCEEECCCHHHHHHHHHH
T ss_conf 9999999865899599827837968764199999997