Query gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 430
No_of_seqs 127 out of 4002
Neff 7.3
Searched_HMMs 23785
Date Tue May 31 23:23:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780927.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 0 0 733.4 30.0 418 1-430 1-418 (419)
2 2yvw_A UDP-N-acetylglucosamine 100.0 0 0 662.0 28.0 413 1-429 10-423 (425)
3 3nvs_A 3-phosphoshikimate 1-ca 100.0 0 0 652.1 28.7 406 1-421 25-448 (450)
4 2pqc_A 3-phosphoshikimate 1-ca 100.0 0 0 642.0 27.9 414 3-427 4-444 (445)
5 1rf6_A 5-enolpyruvylshikimate- 100.0 0 0 632.9 24.2 405 3-421 2-424 (427)
6 2o0b_A 3-phosphoshikimate 1-ca 100.0 0 0 603.3 28.4 400 1-422 1-423 (450)
7 2o0b_A 3-phosphoshikimate 1-ca 99.8 1.2E-18 4.9E-23 139.6 17.6 306 107-428 31-362 (450)
8 1ejd_A MURA, EPT, UDP-N-acetyl 99.8 1.9E-17 8.1E-22 131.7 18.7 301 29-358 99-414 (419)
9 3nvs_A 3-phosphoshikimate 1-ca 99.8 3.2E-17 1.3E-21 130.3 18.4 291 128-427 69-386 (450)
10 1rf6_A 5-enolpyruvylshikimate- 99.8 1.7E-17 7.2E-22 132.0 16.6 287 128-427 43-360 (427)
11 2pqc_A 3-phosphoshikimate 1-ca 99.7 1.2E-16 5.1E-21 126.4 16.2 316 20-360 92-445 (445)
12 2yvw_A UDP-N-acetylglucosamine 99.7 1.6E-15 6.7E-20 119.2 19.2 144 274-427 202-353 (425)
13 3can_A Pyruvate-formate lyase- 44.5 8.7 0.00037 16.7 1.9 35 120-154 7-43 (182)
14 2elc_A Trp D, anthranilate pho 36.2 11 0.00045 16.1 1.3 85 45-149 47-131 (329)
15 2bpq_A Anthranilate phosphorib 35.9 6 0.00025 17.8 -0.1 87 45-149 74-160 (373)
16 1uou_A Thymidine phosphorylase 33.3 20 0.00083 14.4 2.5 84 46-149 78-162 (474)
17 1vqu_A Anthranilate phosphorib 31.8 10 0.00044 16.2 0.6 93 46-149 75-168 (374)
18 1khd_A Anthranilate phosphorib 28.4 17 0.0007 14.9 1.2 85 45-149 60-145 (345)
19 1vjp_A MYO-inositol-1-phosphat 23.0 30 0.0012 13.2 3.5 40 246-286 170-217 (394)
20 2cxi_A Phenylalanyl-tRNA synth 21.7 31 0.0013 13.1 3.4 29 348-378 305-333 (348)
21 1o17_A Anthranilate PRT, anthr 20.6 16 0.00069 14.9 -0.1 145 45-216 50-211 (345)
No 1
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A*
Probab=100.00 E-value=0 Score=733.41 Aligned_cols=418 Identities=47% Similarity=0.799 Sum_probs=383.7
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|+||+|+||++|+|+|++|||||+|||+|++|+|++|+|+|+|+|+|+||++|+++||+||++|+++++
T Consensus 1 M~~~~i~g~~~L~G~i~ipgsKS~s~RaLi~aaLa~g~s~I~n~l~s~D~~~~i~~l~~LG~~I~~~~~----------- 69 (419)
T 1ejd_A 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGS----------- 69 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESSS-----------
T ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCE-----------
T ss_conf 985999588935879978883899999999999739989995499029999999999978999998997-----------
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 99943666586444023431132110225332333210453058663332012123433321033224568614899950
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g 160 (430)
..+.+........+.+.....+++.+++++++++++...++++|||+|++|||++++++|++|||+|++++|++|+.+.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~Gd~sl~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g 149 (419)
T 1ejd_A 70 VWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNG 149 (419)
T ss_dssp EEEECTTCCCCEECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSS
T ss_pred EEEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCC
T ss_conf 99988997877665667624663100200256642871798438854688974789999986787799607925550378
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEE
Q ss_conf 24433333334346661135665044446873323322201599899875014544320244321202554222234200
Q gi|254780927|r 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 (430)
Q Consensus 161 ~~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V 240 (430)
+ ++|+++.++.+|+|++|++|||+++++|.+++.+++++||+++|++||++||++|++.++.++.|+|.+.+++.+|+|
T Consensus 150 ~-l~g~~~~~~~~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V 228 (419)
T 1ejd_A 150 R-LKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRV 228 (419)
T ss_dssp S-CBCCEEECSSCCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEECCSCBCCEEEEC
T ss_pred C-CCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCCEEE
T ss_conf 8-667469658775899999998776166962897258766598998889859639996387199990750157973595
Q ss_pred CCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 14310000100000124442010023456421046889752674367445126753267643157621535666421013
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQA 320 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p 320 (430)
|||||+|+||++||+++++++++.|..+++++.++++|++||+++++.++++.|...+.++..+|++++|.|..+.|++|
T Consensus 229 ~~D~ssaa~~~~aa~l~~~~i~~~~~~~~~~~~~~~il~~mg~~i~~~~~~~~v~~~~~~~~~id~~~~~d~~~~~~~~~ 308 (419)
T 1ejd_A 229 LPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQA 308 (419)
T ss_dssp CBCHHHHHHHHHHHHTTTCEEEEESCCGGGCHHHHHHHHHTTCEEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCEEEECCCCCCCCHHHHH
T ss_conf 88817899999998266986999387868878999999975998996488699985056445458627856664123567
Q ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 46676313566416732046567566788974885899978969998889851015660818999999999985498199
Q gi|254780927|r 321 QFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETE 400 (430)
Q Consensus 321 ~la~laa~A~G~s~I~e~i~e~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~~ 400 (430)
+++.+++++.|.++++++.++.+...++||+|||+++++++|+++|+|+++++|++++++||||||||++|||.++|+++
T Consensus 309 ~~~~~~~~~~G~~~~~~ke~dr~~~~~~~L~klG~~v~~~~d~l~I~G~~~l~g~~v~s~DHRiaMa~ava~l~~~g~~~ 388 (419)
T 1ejd_A 309 QFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTV 388 (419)
T ss_dssp HHHHHHHTSBSEEEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEE
T ss_pred HHHHHHEEECCCEEEEEEEEECHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEE
T ss_conf 76412128136329999998578999999995799799989999998999773872713808999999999983999399
Q ss_pred EECCCEECCCCCCHHHHHHHCCCEEEEECC
Q ss_conf 924330117784878899866978999519
Q gi|254780927|r 401 ISRVYHLDRGFECLEKKLSRCGALIQRIKG 430 (430)
Q Consensus 401 I~~~~~i~ksyp~f~~~L~~LGa~Ie~i~~ 430 (430)
|+|++||+||||+||++|++|||+||||||
T Consensus 389 I~~~~~v~kSyP~F~~~l~~LGa~Ie~v~~ 418 (419)
T 1ejd_A 389 VDRIYHIDRGYERIEDKLRALGANIERVKG 418 (419)
T ss_dssp ECCTHHHHHHSSSHHHHHHTTTCEEEEEEC
T ss_pred ECCCEEEECCCCCHHHHHHHCCCEEEEECC
T ss_conf 847138978642489999966989999707
No 2
>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5}
Probab=100.00 E-value=0 Score=661.99 Aligned_cols=413 Identities=41% Similarity=0.640 Sum_probs=367.8
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|+.|+|+|+++|+|+|++|||||+|||+|++|+|++|+|+|+|+|+|+|+++|+++||+||++|+++++...+.
T Consensus 10 ~~~~~i~g~~~L~G~v~ipgSKS~s~RaLi~aaLa~g~s~i~n~l~s~D~~~~l~aL~~LGa~I~~~~~~~~i~------ 83 (425)
T 2yvw_A 10 RDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLNNTVFIN------ 83 (425)
T ss_dssp CCEEEEECCCCCEEEEECCBCHHHHHHHHHHGGGCSSCEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEE------
T ss_pred CEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCEEEEE------
T ss_conf 52899979796788997788199999999999977996999128907999999999997799899839999995------
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 99943666586444023431132110225332333210453058663332012123433321033224568614899950
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g 160 (430)
+..... ..+.......+++.+++++++++++...+.++|+++|++|||++++++|++||++++..++.+++.+.+
T Consensus 84 ----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~~~l~~Rp~~~l~~~L~~lG~~~~~~~~~~~~~~~~ 158 (425)
T 2yvw_A 84 ----PSINSF-ITNQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGYVYVNLKE 158 (425)
T ss_dssp ----CCCCCC-EECHHHHHHCGGGGGGHHHHHHHHSEEEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEETTEEEEECSS
T ss_pred ----CCCCCC-CCCHHHHHCCCCCHHCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCCCEEECCCC
T ss_conf ----897776-788778631563011124156644874474137544688978887630110000000246740003553
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEE
Q ss_conf 24433333334346661135665044446873323322201599899875014544320244321202554222234200
Q gi|254780927|r 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 (430)
Q Consensus 161 ~~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V 240 (430)
..+..+..+.+|+|++++++++++.+.|.+++.+..++||+++|+++|++||++|++.++ .+.++|++.|++.+|.|
T Consensus 159 --~~~~~~~~~~~s~~~~~~~l~~~~~~~~~t~~~~~~s~~~i~~t~~~l~~~g~~v~~~~~-~i~i~g~~~~~~~~~~V 235 (425)
T 2yvw_A 159 --KRRVHFKFDLVTVTGTENALLYLASVPEESILENIALEPEVMDLIEVLKKMGAHVKVEGR-SAYVKGSENLKGFTHSV 235 (425)
T ss_dssp --CCCCEEECSSCCHHHHHHHHHHHTTCSSEEEEESCCCCHHHHHHHHHHHHTTCEEEEETT-EEEEECCSSCCCCEEEC
T ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCE-EEEEECCCCCCCCEEEE
T ss_conf --323420355431367899998997479972023224442079999999857963130120-48971672147953895
Q ss_pred CCCCHHCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 14310000100000124442010023456421046889752674367445126753267643157621535666421013
Q gi|254780927|r 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQA 320 (430)
Q Consensus 241 ~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~~p 320 (430)
|||||+|+||++||++++|+++++|+..++.|....++.+||+.+....+...+... ..++..+++..++|++++|++|
T Consensus 236 ~~D~ssAa~~~~aa~l~~g~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~ 314 (425)
T 2yvw_A 236 IPDRIEAGTFMVGAVLTDGEILLENARINHLRAVVEKLKLIGGEVVEENGNLRVFRK-ESLRACDIETQVYPGFPTDMQA 314 (425)
T ss_dssp CBCHHHHHHHHHHHHHTTCEEEEESCCGGGCHHHHHHHHHHTEEEEEETTEEEEEEC-SCCBCCCEEBCSTTSBCHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEECCCEEEEEC-CCCCCCCCCCCCCCCCCHHCCH
T ss_conf 788367777888864269846993676653123446898727658960463267522-4435555677768775111001
Q ss_pred HHHHHHHCCCCCEEEEEECCHHHHH-HHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 4667631356641673204656756-678897488589997896999888985101566081899999999998549819
Q gi|254780927|r 321 QFMAMMCCAAGISHITETIFENRFM-HVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGET 399 (430)
Q Consensus 321 ~la~laa~A~G~s~I~e~i~e~R~~-~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiaMa~~ia~L~a~g~~ 399 (430)
++++++++|+|.++++++. .||+. .++||+|||++|++++|+++|+|+++|+|++++++||||||||++|||.++|++
T Consensus 315 ~~~~~a~~a~G~~~lr~KE-sdRi~~~~~~L~klG~~v~~~~d~l~I~G~~~l~g~~v~s~DHRiaMa~avaal~~~g~~ 393 (425)
T 2yvw_A 315 QFMALLSVAKGKSRIKENI-FEHRFHHAQELNRLGANITVRGNTAYVEGVERLYGSEVYSTDLRASASLVLAGLVAQGET 393 (425)
T ss_dssp HHHHHHTTSBSEEEEECSS-CTTCCHHHHHHHTTTCCEEEETTEEEEECCSCCBCCEEECCCTTTTHHHHHHHHHSBSEE
T ss_pred HHHHHEEEECCCEEEEEEC-CHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 3212204824618999620-236889999999789979998998999899987177356885899999999998589939
Q ss_pred EEECCCEECCCCCCHHHHHHHCCCEEEEEC
Q ss_conf 992433011778487889986697899951
Q gi|254780927|r 400 EISRVYHLDRGFECLEKKLSRCGALIQRIK 429 (430)
Q Consensus 400 ~I~~~~~i~ksyp~f~~~L~~LGa~Ie~i~ 429 (430)
+|+|++||+||||+||++|++|||+||||+
T Consensus 394 ~I~~~~~v~kSyP~F~~~l~~LGa~Ie~i~ 423 (425)
T 2yvw_A 394 VVRDVYHLDRGYEKLEEKLKKLGADIERVS 423 (425)
T ss_dssp EEECTHHHHHHCSSHHHHHHHTTCCEEEEC
T ss_pred EECCCEEEECCCHHHHHHHHHCCCEEEEEE
T ss_conf 986742897975319999996799899983
No 3
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A
Probab=100.00 E-value=0 Score=652.10 Aligned_cols=406 Identities=18% Similarity=0.260 Sum_probs=356.5
Q ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCE
Q ss_conf 94389827973137897696466899999999746996999869836999999999997498999927741142024525
Q gi|254780927|r 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSST 80 (430)
Q Consensus 1 M~~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~ 80 (430)
|+|++|+|+++|+|+|.+|||||++||+|++|+|++|+|+|+|+|+++|+.+|+++|++||++|+++.+...+...+.+.
T Consensus 25 m~~~~i~p~~~l~G~v~vp~sKS~s~R~li~aaLa~g~s~I~n~~~~~Dv~~~l~~l~~LG~~i~~~~~~~~i~i~g~g~ 104 (450)
T 3nvs_A 25 MESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQ 104 (450)
T ss_dssp CCEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECCSS
T ss_pred CEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCC
T ss_conf 62799807980689999178099999999999976998999249907899999999998699799957925999981687
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEE
Q ss_conf 999436665864440234311321102253323332104530586633320121234333210332245--686148999
Q gi|254780927|r 81 MHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARV 158 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i 158 (430)
...........++++++++||+.++++. +.+.+.++|||+|++|||++|+++|++|||+|++ +++++|+++
T Consensus 105 ------~~~~~~~~~i~~g~SGt~lrll~~l~~~-~~~~v~~~G~~sL~~Rp~~~l~~~L~~lGa~i~~~~~~~~~P~~i 177 (450)
T 3nvs_A 105 ------AFHTTQPLELFLGNAGTAMRPLAAALCL-GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRI 177 (450)
T ss_dssp ------CCBCSSCEEEECTTCHHHHHHHHHHTTS-SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEEE
T ss_pred ------CCCCCCCHHHHHCCCHHHHHHHHHHCCC-CCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEE
T ss_conf ------6567885454313557788888763114-563497058555532048789999997698999811577341698
Q ss_pred ECCCCCCCCCCCCC-CCCCCEEEEEEECCCCCCCCCCC---CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC-C
Q ss_conf 50244333333343-46661135665044446873323---3222015998998750145443202443212025542-2
Q gi|254780927|r 159 SSKGLRGTSYTFPK-VSVGATQVMMMVASLSHGDTSIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTS-L 233 (430)
Q Consensus 159 ~g~~l~g~~i~l~~-~S~q~~s~lLlaA~~a~G~t~I~---~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~-l 233 (430)
.|.++++..++++. .|+|++|++||||++++|.|+|. +++++||+++|++||++||+++++.+++++.|++++. +
T Consensus 178 ~g~~l~~~~~~i~~~~SsQ~~salLlaa~~~~g~t~I~~~~~~~s~p~i~~t~~~l~~~G~~i~~~~~~~~~i~~~~~~~ 257 (450)
T 3nvs_A 178 QGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYV 257 (450)
T ss_dssp ECCCCCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETTTEEEECTTCCCB
T ss_pred ECCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCC
T ss_conf 87876687389787553288889998887358857997057667774899999987426732531687228996474344
Q ss_pred CCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCC---CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCC
Q ss_conf 223420014310000100000124442010023456421---04688975267436744512675326764315762153
Q gi|254780927|r 234 SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLK---TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAP 310 (430)
Q Consensus 234 ~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~---~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~ 310 (430)
.+.+|+||+|||+|+||++|+++++|+++++|+..++.+ .++++|++||+++++.++.+.+.. .++.+++++..+
T Consensus 258 ~~~~~~v~~D~s~Aa~~~~aa~l~~g~i~i~~~~~~~~q~~~~~l~il~~mG~~i~~~~~~~~~~~--~~l~~~~~d~~~ 335 (450)
T 3nvs_A 258 SPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARR--GELNAVDLDFNH 335 (450)
T ss_dssp CCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGGGGHHHHHHHHTCEEEECSSEEEEEC--CCCBCCEEECTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEC--CCCCCCCCCCCC
T ss_conf 783588389988999999999974995899377788654457999999976985996597799506--877623468456
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHH-------HHHHHHCCCEEEEECCEEEEECCCCCEEEEEEE-CCH
Q ss_conf 566642101346676313566416732046567566-------788974885899978969998889851015660-818
Q gi|254780927|r 311 FPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMH-------VQELVRLGARISLSGQTARVEGVQGLRGAPVMA-TDL 382 (430)
Q Consensus 311 ~pg~~~D~~p~la~laa~A~G~s~I~e~i~e~R~~~-------~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~-~DH 382 (430)
+| |++|+++++||+|+|+++|+ .++|.|+++ ++||+|||+++++++|+++|+|+.++++++|++ +||
T Consensus 336 ~p----D~~p~l~vla~~a~g~s~i~-gi~~lr~KEsdRl~~~~~~L~klG~~i~~~~d~l~I~G~~~~~~~~v~s~~DH 410 (450)
T 3nvs_A 336 IP----DAAMTIATTALFAKGTTAIR-NVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDH 410 (450)
T ss_dssp CT----TTHHHHHHHGGGSBSCEEEE-SCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCSSCCCCEECCTTCH
T ss_pred CC----CHHHHHHHHHHHCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCH
T ss_conf 98----36778999997259984304-55553013026899999999977998999799999979987767657789878
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 999999999985498199924330117784878899866
Q gi|254780927|r 383 RASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 383 RiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
|+||++++||| +.+.++|+|++||+||||+||++|++|
T Consensus 411 R~ama~~iaal-~~~~~~I~~~~~i~~syP~F~~~l~~L 448 (450)
T 3nvs_A 411 RMAMCFSLVAL-SDTPVTINDPKCTSKTFPDYFDKFAQL 448 (450)
T ss_dssp HHHHHHHGGGG-SSSCEEEESGGGGGGTCTTHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCEEEECCCEECCCCCCHHHHHHHH
T ss_conf 99999999998-499989956650038671399999986
No 4
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=100.00 E-value=0 Score=642.04 Aligned_cols=414 Identities=16% Similarity=0.195 Sum_probs=353.3
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEE
Q ss_conf 38982797313789769646689999999974699699986983699999999999749899992774114202452599
Q gi|254780927|r 3 RIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMH 82 (430)
Q Consensus 3 ~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~ 82 (430)
-+.|+++++|+|+|++|||||++||+|++|+|++|+|+|+|+|+|+|+.+|+++|++||++|+++++...+.......+
T Consensus 4 ~~~~~~~~~L~G~v~~pgSKs~~~R~L~~aal~~g~s~i~n~~~~~Dv~~m~~~L~~lG~~i~~~~~~~~I~g~~~~~~- 82 (445)
T 2pqc_A 4 PATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWIIDGVGNGGL- 82 (445)
T ss_dssp CEEEECCSCCEEEEECCBCHHHHHHHHHHHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEEEECTTCC-
T ss_pred CEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCC-
T ss_conf 8772799970699976881899999999999759999992698239999999999977998999799999993688876-
Q ss_pred EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCEEEEEECC
Q ss_conf 943666586444023431132110225332333210453058663332012123433321033224568-6148999502
Q gi|254780927|r 83 FRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDG-GYVDARVSSK 161 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~-g~~p~~i~g~ 161 (430)
........++++++++||+.++++.++ +.+.++|+|+|++|||++|+++|++|||++++++ +++|+.+.|+
T Consensus 83 -------~~~~~~i~~g~sgt~~r~l~~l~~~~~-~~~~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~lPi~i~g~ 154 (445)
T 2pqc_A 83 -------LAPEAPLDFGNAATGCRLTMGLVGVYD-FDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGP 154 (445)
T ss_dssp -------CCCSSCEECTTCHHHHHHHHHHHHTSS-SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEEEEECC
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECC
T ss_conf -------686267787655678887655540578-439975863416413899999998547457605798467799866
Q ss_pred C-CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC-CCCHH-HHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 4-43333333434666113566504444687332332-22015-998998750145443202443212025542222342
Q gi|254780927|r 162 G-LRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNA-AREPE-VVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRH 238 (430)
Q Consensus 162 ~-l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~-~~~P~-i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~ 238 (430)
. +.+..+..+.+|+|+++++||||++++|.+++.++ .+++| +.++..++.++|++++..+.++|+|+|+++|.+.+|
T Consensus 155 ~~~~~~~i~~~~~S~~~~s~lllaa~~~~g~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~ 234 (445)
T 2pqc_A 155 KTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVI 234 (445)
T ss_dssp SSCCCCEEECSSSCHHHHHHHHHHHHTSSSEEEEEESSCCCCHHHHHHHHTTCCEEEEECTTSCEEEEEETTCCCBCCEE
T ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEE
T ss_conf 88866799815654999999995231489958995887777799999998526654211588816999876555688478
Q ss_pred EECCCCHHCCHHHHHCCCC-CCCEEEECCCCCCCCC-HHHHHHHCCCCEEEECCCE-------EEEECCCCCCEEEEECC
Q ss_conf 0014310000100000124-4420100234564210-4688975267436744512-------67532676431576215
Q gi|254780927|r 239 RILPDRIEAGTYAMAVAMT-GGDVILKMTDSSLLKT-VFKVMRQTGVDIDIIDEGI-------RVRWNGEKLRPVDVITA 309 (430)
Q Consensus 239 ~V~~D~ssAa~fl~Aaalt-~g~i~i~n~~~~~~~~-~l~iL~~mGa~i~~~~~~i-------~V~~~~~~l~~~di~~~ 309 (430)
+|||||++|+||++|++++ +++++++|+..++.+. ++++|++||+++++.++.+ .+..+...+.+++++..
T Consensus 235 ~v~~D~s~aa~~~~aaa~~~g~~i~i~n~~~~~~~~~~l~iL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 314 (445)
T 2pqc_A 235 DVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGVTVPED 314 (445)
T ss_dssp ECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGGCHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEECCCCBCCEECGG
T ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCEEECCCCEEEEEEEECCCCCCCCCCC
T ss_conf 83898789999999999769985998188866207899999998599799604547648602678876314566315745
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHH-------HHHHHHCCCEEEEECCEEEEECCC------CCEEEE
Q ss_conf 3566642101346676313566416732046567566-------788974885899978969998889------851015
Q gi|254780927|r 310 PFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMH-------VQELVRLGARISLSGQTARVEGVQ------GLRGAP 376 (430)
Q Consensus 310 ~~pg~~~D~~p~la~laa~A~G~s~I~e~i~e~R~~~-------~~eL~klG~~v~~~~d~l~I~G~~------~l~g~~ 376 (430)
++|.+ +|++|+++++|++|+|+|+|+ .+++.|+++ .+||+|||+++++++|+++|+|++ .++|+.
T Consensus 315 ~~p~~-~D~~p~la~~a~~a~g~s~i~-gi~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~g~~~~~~~~~~~g~~ 392 (445)
T 2pqc_A 315 RAPSM-IDEYPILAVAAAFAEGATVMN-GLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAA 392 (445)
T ss_dssp GGGGT-GGGHHHHHHHHTTSBSEEEEC-CCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSCEEEECCTTCTTCSCTTCCE
T ss_pred CCCCH-HHHHHHHHHHHHHCCCCEEEE-CHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCE
T ss_conf 59975-889999999998479976991-2267301001789999999997798799838869996886665666776767
Q ss_pred EEEC-CHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHCCCEEEE
Q ss_conf 6608-18999999999985498199924330117784878899866978999
Q gi|254780927|r 377 VMAT-DLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRCGALIQR 427 (430)
Q Consensus 377 v~~~-DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~LGa~Ie~ 427 (430)
++++ ||||||+|++|||.++|+++|+|++||+|||||||++|++|||+||-
T Consensus 393 i~t~~DHRiama~~iaal~~~g~~~I~~~~~v~ksyP~f~~~l~~LGa~ie~ 444 (445)
T 2pqc_A 393 VATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAKIEL 444 (445)
T ss_dssp ECCTTCHHHHHHHHHHHTTSSSCEEESCCTTGGGTCTTHHHHHHHHTCEEEE
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHCCCEEEE
T ss_conf 8589978999999999986899899956807967046099999957988995
No 5
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=0 Score=632.88 Aligned_cols=405 Identities=22% Similarity=0.303 Sum_probs=349.5
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEE
Q ss_conf 38982797313789769646689999999974699699986983699999999999749899992774114202452599
Q gi|254780927|r 3 RIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMH 82 (430)
Q Consensus 3 ~l~V~g~~~L~G~i~vpgSKs~s~Ral~aaaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~ 82 (430)
|++++ +++|+|+|++|||||++||+|++|+|++|+|+|+|+|+|+|+.+|+++||+||++|+++++...+...+...
T Consensus 2 ~~~~~-~~~l~G~v~~pgSKS~s~R~Li~aaLa~g~s~i~n~~~s~Dv~~~i~~L~~lG~~i~~~~~~~~i~g~g~~~-- 78 (427)
T 1rf6_A 2 KLKTN-IRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAG-- 78 (427)
T ss_dssp EECCC-CCCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCSSC--
T ss_pred CCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCC--
T ss_conf 52367-877079998379689999999999976998999279903999999999997899899649999999068877--
Q ss_pred EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEEEEEC
Q ss_conf 9436665864440234311321102253323332104530586633320121234333210332245--68614899950
Q gi|254780927|r 83 FRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSS 160 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~--~~g~~p~~i~g 160 (430)
.........++++++++||+.++++... +.+.++|+|+|++|||++|+++|++|||++++ +++++|+.+.|
T Consensus 79 ------~~~~~~~i~~g~sgt~~r~l~~~~a~~~-~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g 151 (427)
T 1rf6_A 79 ------LKAPQNALNMGNSGTSIRLISGVLAGAD-FEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKG 151 (427)
T ss_dssp ------CCCCSSCEECTTCHHHHHHHHHHGGGCS-SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEEC
T ss_pred ------CCCCHHHHHHCCCCEEEECCCCCCCCCC-CEECCCCCHHHHCCCCCHHHHHHHHCCCEEEECCCCCCCEEECCC
T ss_conf ------6786266775344311000222111214-333466886662653201234577428479831355630121147
Q ss_pred C-CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCE
Q ss_conf 2-443333333434666113566504444687332332220159989987501454432024432120255422223420
Q gi|254780927|r 161 K-GLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHR 239 (430)
Q Consensus 161 ~-~l~g~~i~l~~~S~q~~s~lLlaA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~ 239 (430)
. .+++.++.++.+|+|+++++||+|++++|.++|.+ .+||+.+|++||++||++++..+ +++.|+|++.|++.+|+
T Consensus 152 ~~~~~~~~~~~~~~S~~~~s~Lllaa~~~~g~~~i~~--~~~~~~~t~~~L~~~G~~i~~~~-~~i~i~~~~~~~~~~~~ 228 (427)
T 1rf6_A 152 TKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIE--KEYTRNHTEDMLQQFGGHLSVDG-KKITVQGPQKLTGQKVV 228 (427)
T ss_dssp CTTCCCCEEECSSCCHHHHHHHHHHHTTSSEEEEEEC--SSCCCCHHHHHHHHTTCCCEEET-TEEEEEECCCCBCCEEE
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCEEECCCCEEEEC--CCCHHHHHHHHHHHCCCCCCCCC-EEEEECCCEEECCCEEE
T ss_conf 7887555995357777551102110121588445632--34105678999986298421231-18998752132674699
Q ss_pred ECCCCHHCCHHHHHCCCC-CCCEEEECCCCCCCCC-HHHHHHHCCCCEEEECCCE-----EEEECCCCCCEEEEECCCCC
Q ss_conf 014310000100000124-4420100234564210-4688975267436744512-----67532676431576215356
Q gi|254780927|r 240 ILPDRIEAGTYAMAVAMT-GGDVILKMTDSSLLKT-VFKVMRQTGVDIDIIDEGI-----RVRWNGEKLRPVDVITAPFP 312 (430)
Q Consensus 240 V~~D~ssAa~fl~Aaalt-~g~i~i~n~~~~~~~~-~l~iL~~mGa~i~~~~~~i-----~V~~~~~~l~~~di~~~~~p 312 (430)
||+|||+|+||+++|+++ +++++++|++.++.+. ++++|++||+.+++.+... ........++++++++.++|
T Consensus 229 Vp~D~s~a~~~l~~aal~~g~~i~i~n~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 308 (427)
T 1rf6_A 229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIP 308 (427)
T ss_dssp CCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHHHHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGG
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 17977889999999996699879987789652247898865422541120243222124532021267442223444587
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEEE----ECCH-HHHHHH-HHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC-CHHHH
Q ss_conf 6642101346676313566416732----0465-675667-889748858999789699988898510156608-18999
Q gi|254780927|r 313 GFPTDLQAQFMAMMCCAAGISHITE----TIFE-NRFMHV-QELVRLGARISLSGQTARVEGVQGLRGAPVMAT-DLRAS 385 (430)
Q Consensus 313 g~~~D~~p~la~laa~A~G~s~I~e----~i~e-~R~~~~-~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~-DHRia 385 (430)
++ +|++|++++++++|+|+|+|++ +++| ||+..+ +||+|||+++++++|+++|+|++.++|++|+++ |||+|
T Consensus 309 ~~-~d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~G~~~l~~~~v~t~~DHR~a 387 (427)
T 1rf6_A 309 RL-IDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIG 387 (427)
T ss_dssp GT-GGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCCCCCEEEECTTCHHHH
T ss_pred CC-HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEEECCCCHHHH
T ss_conf 63-34433555652035773255006777878757999999999977997999899999979998857877888809999
Q ss_pred HHHHHHHHH-CCCEEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 999999985-498199924330117784878899866
Q gi|254780927|r 386 VSLVIAALA-AQGETEISRVYHLDRGFECLEKKLSRC 421 (430)
Q Consensus 386 Ma~~ia~L~-a~g~~~I~~~~~i~ksyp~f~~~L~~L 421 (430)
|||++|||. ++|+++|+|++||+||||+||++|++|
T Consensus 388 ma~~i~al~~~~g~~~I~~~~~v~ksyP~F~~~l~~L 424 (427)
T 1rf6_A 388 MMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESL 424 (427)
T ss_dssp HHHHHHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEECCCCEEECCCHHHHHHHHHH
T ss_conf 9999999865899599827837968764199999997
No 6
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=100.00 E-value=0 Score=603.31 Aligned_cols=400 Identities=18% Similarity=0.222 Sum_probs=337.3
Q ss_pred CCEEEE-ECCCCEEEEEECCCCHHHHHHHHHHHHHC----CCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEE
Q ss_conf 943898-27973137897696466899999999746----9969998698369999999999974989999277411420
Q gi|254780927|r 1 MDRIKI-IGGNKLNGTIAISGAKNASLPVMIASLLT----SETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNK 75 (430)
Q Consensus 1 M~~l~V-~g~~~L~G~i~vpgSKs~s~Ral~aaaLa----~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~ 75 (430)
|.+.=. .++++|+|+|++|||||++||+|++|+|+ +|+|+|+|+|+++|+.+|+++|++||++|+++++...+.
T Consensus 1 ~~~~~~~~~p~~l~G~i~vpgsKS~s~RalilaaLa~~~~~G~s~i~n~~~~~Dv~~~l~~L~~LG~~i~~~~~~~~I~- 79 (450)
T 2o0b_A 1 MKTWPAPTAPTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGVGSELTVS- 79 (450)
T ss_dssp CCCEECCCCSSCCEEEECCCBCHHHHHHHHHHHHHHHHTTCCCEEEETCCCSHHHHHHHHHHHHTTCEEECSSSCEEEE-
T ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEE-
T ss_conf 9878899999987889982876799999999998627466992998989906999999999998799899879999996-
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 24525999436665864440234311321102253323332104530586633320121234333210332245686148
Q gi|254780927|r 76 SYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVD 155 (430)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p 155 (430)
....... .....++++++++||+.++++.. ...+.++|||+|++|||++|+++|++|||+|+.++ .|
T Consensus 80 ---------g~~~~~~-~~~l~~g~Sgt~~rll~~l~a~~-~~~~~l~G~~sL~~RP~~~l~~~L~~lGa~i~~~~--~p 146 (450)
T 2o0b_A 80 ---------GRIEPGP-GARVDCGLAGTVLRFVPPLAALG-SVPVTFDGDQQARGRPIAPLLDALRELGVAVDGTG--LP 146 (450)
T ss_dssp ---------SCCCCCT-TCEEECTTCHHHHHHHHHHHTTS-SSEEEEECCGGGGGSCCHHHHHHHHHTTCEEECSS--SS
T ss_pred ---------CCCCCCC-CCCEEHHCCHHHHHHHHHHHHHC-CEEEEECCCHHHCCCCCHHHHHHHHHCCCEEECCC--CC
T ss_conf ---------8867898-76322110277999999999626-73699658767515985588767651480786685--75
Q ss_pred EEEEC-CCCCCCCCCCCC-CCCCCEEEEEEECC-CCCCCCCC---CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECC
Q ss_conf 99950-244333333343-46661135665044-44687332---33222015998998750145443202443212025
Q gi|254780927|r 156 ARVSS-KGLRGTSYTFPK-VSVGATQVMMMVAS-LSHGDTSI---YNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQG 229 (430)
Q Consensus 156 ~~i~g-~~l~g~~i~l~~-~S~q~~s~lLlaA~-~a~G~t~I---~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g 229 (430)
+.+.+ +.++++++.+|. .|+|++|++||+|+ +++|.+.+ .+.+++||+++|++||++||++|+..+.+++.|.|
T Consensus 147 ~~i~~~~~l~~~~i~l~~~~sSQ~~salLlaa~~~~~g~~~i~~~~~~~s~p~i~~t~~~L~~~G~~I~~~~~~~~~i~~ 226 (450)
T 2o0b_A 147 FRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNRWQVRP 226 (450)
T ss_dssp EEEECCSCCCCEEEEECCTTCTHHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCSTTEEEECC
T ss_pred EEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCEEEECC
T ss_conf 57855888669768715877319998999877760699644313454467500998999998779358834784576225
Q ss_pred CCCCCCCCCEECCCCHHCCHHHHHCCCCCCCEEEECCCCCCCC---CHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEE
Q ss_conf 5422223420014310000100000124442010023456421---0468897526743674451267532676431576
Q gi|254780927|r 230 VTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLK---TVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDV 306 (430)
Q Consensus 230 ~~~l~~~~~~V~~D~ssAa~fl~Aaalt~g~i~i~n~~~~~~~---~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di 306 (430)
. .+.+.+|+|+||||+|+||++|++++++++++.|++..+++ .++++|++||+++++.++++++... ..+.++++
T Consensus 227 ~-~~~~~~~~v~~D~ssAa~~l~aa~i~~~~i~i~~~~~~~~q~~~~~l~~L~~mG~~i~~~~~~~~v~~~-~~l~~~~~ 304 (450)
T 2o0b_A 227 G-PVAARRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRGP-TGYDGFDV 304 (450)
T ss_dssp C-CCCCCCEECCBCHHHHHHHHHHHHHHTCEEEETTCCSSCSSCHHHHHHHHHHTTCEEEEETTEEEEECC-SCCCCCEE
T ss_pred C-EECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEECCC-CCCCEEEC
T ss_conf 0-213532116887678999999998579957984243233350769999998659479971883798457-65320531
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCC--EEEEE----ECCH-HHHHH-HHHHHHCCCEEEEECCEEEEECCCCCEEEEEE
Q ss_conf 21535666421013466763135664--16732----0465-67566-78897488589997896999888985101566
Q gi|254780927|r 307 ITAPFPGFPTDLQAQFMAMMCCAAGI--SHITE----TIFE-NRFMH-VQELVRLGARISLSGQTARVEGVQGLRGAPVM 378 (430)
Q Consensus 307 ~~~~~pg~~~D~~p~la~laa~A~G~--s~I~e----~i~e-~R~~~-~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~ 378 (430)
+...+| |++|.++++|++|.+. ++|+. +++| ||+.. ++||+|||+++++++|+++|+|. +++++.|+
T Consensus 305 ~~~~~p----dl~p~l~~la~~a~~~~~s~i~gi~~lr~KESdRi~~~~~~L~klG~~~~~~~d~l~I~G~-~l~~~~v~ 379 (450)
T 2o0b_A 305 DLRAVG----ELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVITAT-PLRPGIWR 379 (450)
T ss_dssp ECTTCG----GGHHHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEECC-CCCCEEEC
T ss_pred CCCCCC----CCCHHHHHHHHHHHCCCCEEECCHHHHHHEHHHHHHHHHHHHHHCCCEEEEECCEEEEECC-CCCCCEEC
T ss_conf 666675----4312567788874147740221510311010069999999999779989997998999797-78677452
Q ss_pred EC-CHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHCC
Q ss_conf 08-189999999999854981999243301177848788998669
Q gi|254780927|r 379 AT-DLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRCG 422 (430)
Q Consensus 379 ~~-DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~LG 422 (430)
++ ||||||||++|||.++| ++|+|++||+||||+||+.|++|+
T Consensus 380 s~~DHRiaMa~~i~al~~~g-~~I~~~~~v~ks~P~F~~~~~~L~ 423 (450)
T 2o0b_A 380 AYADHRMAMAGAIIGLRVAG-VEVDDIAATTKTLPEFPRLWAEMV 423 (450)
T ss_dssp CTTCHHHHHHHHHHHTTSTT-EEESCGGGGGGTCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC-EEEECCCEEECCCCCHHHHHHHHH
T ss_conf 89719999999999976798-699387714276988799999861
No 7
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=99.82 E-value=1.2e-18 Score=139.58 Aligned_cols=306 Identities=21% Similarity=0.248 Sum_probs=185.4
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 22533233321045305866333201212343332103322456861489995024433333334346661135665044
Q gi|254780927|r 107 VIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVMMMVAS 186 (430)
Q Consensus 107 ~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g~~i~l~~~S~q~~s~lLlaA~ 186 (430)
++.+|++...+++..+.+ -+...-+..++++|++||++|+.+++.+- |.|.++.+-...++.-.++ +..-||.++
T Consensus 31 ilaaLa~~~~~G~s~i~n--~~~~~Dv~~~l~~L~~LG~~i~~~~~~~~--I~g~~~~~~~~~l~~g~Sg-t~~rll~~l 105 (450)
T 2o0b_A 31 VLAALAAAQGRGASTISG--ALRSRDTELMLDALQTLGLRVDGVGSELT--VSGRIEPGPGARVDCGLAG-TVLRFVPPL 105 (450)
T ss_dssp HHHHHHHHTTCCCEEEET--CCCSHHHHHHHHHHHHTTCEEECSSSCEE--EESCCCCCTTCEEECTTCH-HHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEECC--CCCCHHHHHHHHHHHHCCCEEEEECCEEE--EECCCCCCCCCCEEHHCCH-HHHHHHHHH
T ss_conf 999862746699299898--99069999999999987998998799999--9688678987632211027-799999999
Q ss_pred C--CCCCCCCCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCHHC--CHHHHHCCCCCCC
Q ss_conf 4--468733233--222015998998750145443202443212025542222342001431000--0100000124442
Q gi|254780927|r 187 L--SHGDTSIYN--AAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPDRIEA--GTYAMAVAMTGGD 260 (430)
Q Consensus 187 ~--a~G~t~I~~--~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~~~l~~~~~~V~~D~ssA--a~fl~Aaalt~g~ 260 (430)
+ ..+.+++.+ -..++.+..+++.|++||++|+..+ .-+.+.+...+.+.+|.++.+-||. ...+.||+.....
T Consensus 106 ~a~~~~~~~l~G~~sL~~RP~~~l~~~L~~lGa~i~~~~-~p~~i~~~~~l~~~~i~l~~~~sSQ~~salLlaa~~~~~g 184 (450)
T 2o0b_A 106 AALGSVPVTFDGDQQARGRPIAPLLDALRELGVAVDGTG-LPFRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDG 184 (450)
T ss_dssp HTTSSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEECSS-SSEEEECCSCCCCEEEEECCTTCTHHHHHHHHHGGGSTTC
T ss_pred HHHCCEEEEECCCHHHCCCCCHHHHHHHHHCCCEEECCC-CCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 962673699658767515985588767651480786685-7557855888669768715877319998999877760699
Q ss_pred EEEE----CCCCC-CCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCE
Q ss_conf 0100----23456-4210468897526743674451267532676431576215356664210--134667631356641
Q gi|254780927|r 261 VILK----MTDSS-LLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGIS 333 (430)
Q Consensus 261 i~i~----n~~~~-~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s 333 (430)
+++. |.... ...-.+++|++||++|+..+....+..+ .++.+.+..-. .|. ..+++++++...|..
T Consensus 185 ~~~i~~~~~~~s~p~i~~t~~~L~~~G~~I~~~~~~~~~i~~-~~~~~~~~~v~------~D~ssAa~~l~aa~i~~~~i 257 (450)
T 2o0b_A 185 LTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNRWQVRP-GPVAARRWDIE------PDLTNAVAFLSAAVVSGGTV 257 (450)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCSTTEEEECC-CCCCCCCEECC------BCHHHHHHHHHHHHHHTCEE
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCEEEECC-CEECCCCCCCC------CCHHHHHHHHHHHHHCCCCE
T ss_conf 644313454467500998999998779358834784576225-02135321168------87678999999998579957
Q ss_pred EEEE----ECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEEC---CHHHHHHHHHHHHHC--CCEEEEECC
Q ss_conf 6732----0465675667889748858999789699988898510156608---189999999999854--981999243
Q gi|254780927|r 334 HITE----TIFENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMAT---DLRASVSLVIAALAA--QGETEISRV 404 (430)
Q Consensus 334 ~I~e----~i~e~R~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~---DHRiaMa~~ia~L~a--~g~~~I~~~ 404 (430)
++.. ....+| ..++-|++||++++..++++.+.++..+++..++.. |.- +.++++++.+ ++.+++.|+
T Consensus 258 ~i~~~~~~~~q~~~-~~l~~L~~mG~~i~~~~~~~~v~~~~~l~~~~~~~~~~pdl~--p~l~~la~~a~~~~~s~i~gi 334 (450)
T 2o0b_A 258 RITGWPRVSVQPAD-HILAILRQLNAVVIHADSSLEVRGPTGYDGFDVDLRAVGELT--PSVAALAALASPGSVSRLSGI 334 (450)
T ss_dssp EETTCCSSCSSCHH-HHHHHHHHTTCEEEEETTEEEEECCSCCCCCEEECTTCGGGH--HHHHHHHHTSSTTCEEEEESC
T ss_pred EEECCCCCCCCCHH-HHHHHHHHCCCEEEECCCCEEECCCCCCCEEECCCCCCCCCC--HHHHHHHHHHHCCCCEEECCH
T ss_conf 98424323335076-999999865947997188379845765320531666675431--256778887414774022151
Q ss_pred CEECCCCCC----HHHHHHHCCCEEEEE
Q ss_conf 301177848----788998669789995
Q gi|254780927|r 405 YHLDRGFEC----LEKKLSRCGALIQRI 428 (430)
Q Consensus 405 ~~i~ksyp~----f~~~L~~LGa~Ie~i 428 (430)
++++--..| +.+.|+++|++++.-
T Consensus 335 ~~lr~KESdRi~~~~~~L~klG~~~~~~ 362 (450)
T 2o0b_A 335 AHLRGHETDRLAALSTEINRLGGTCRET 362 (450)
T ss_dssp GGGGGSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHEHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 0311010069999999999779989997
No 8
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A*
Probab=99.79 E-value=1.9e-17 Score=131.66 Aligned_cols=301 Identities=20% Similarity=0.192 Sum_probs=125.3
Q ss_pred HHHHHHCCCCEEEECCC--CHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 99997469969998698--3699999999999749899992774114202452599943666586444023431132110
Q gi|254780927|r 29 MIASLLTSETLTLENIP--DLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFW 106 (430)
Q Consensus 29 l~aaaLa~g~s~i~n~~--~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~ 106 (430)
+++|++.++.+++.+-- ...-....+++|++||++|+..+........+ .+ ..........+.. -++.+
T Consensus 99 ~~~a~~~~~~~~l~Gd~sl~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g--~l--~g~~~~~~~~Ssq-----~~s~l 169 (419)
T 1ejd_A 99 PLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNG--RL--KGAHIVMDKVSVG-----ATVTI 169 (419)
T ss_dssp HHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSS--SC--BCCEEECSSCCHH-----HHHHH
T ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCC--CC--CCCEEECCCCCHH-----HHHHH
T ss_conf 256642871798438854688974789999986787799607925550378--86--6746965877589-----99999
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEC-CCCCCCCCCCCC--CCCCCEEEEEE
Q ss_conf 225332333210453058663332012123433321033224568614899950-244333333343--46661135665
Q gi|254780927|r 107 VIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS-KGLRGTSYTFPK--VSVGATQVMMM 183 (430)
Q Consensus 107 ~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g-~~l~g~~i~l~~--~S~q~~s~lLl 183 (430)
++.++++ .+...+ ...-.++.++..++.|+.+|++|+.++... +.+.| +.+++.+|..+. +|+. ..+.
T Consensus 170 lla~~~~-~g~~~i----~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~-~~i~g~~~~~~~~~~V~~D~ssaa---~~~~ 240 (419)
T 1ejd_A 170 MSAATLA-EGTTII----ENAAREPEIVDTANFLVALGAKISGQGTDR-ITIEGVERLGGGVYRVLPDRIETG---TFLV 240 (419)
T ss_dssp HHHHTTS-BSEEEE----ETCCCCHHHHHHHHHHHHTTCEEECTTSSE-EEEECCSCBCCEEEECCBCHHHHH---HHHH
T ss_pred HHHHHHC-CCCEEE----EECCCCCCHHHHHHHHHHCCEEEEECCCEE-EEEECCCCCCCCCEEECCCCHHHH---HHHH
T ss_conf 9877616-696289----725876659899888985963999638719-999075015797359588817899---9999
Q ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCC-CCCCCCCCEECCCC----HHCCHHHHHCCCCC
Q ss_conf 04444687332332220159989987501454432024432120255-42222342001431----00001000001244
Q gi|254780927|r 184 VASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGV-TSLSGTRHRILPDR----IEAGTYAMAVAMTG 258 (430)
Q Consensus 184 aA~~a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~~i~I~g~-~~l~~~~~~V~~D~----ssAa~fl~Aaalt~ 258 (430)
+|.+..+..++.|... +..+...+.|++||++|++... .+.|... ....+.+..-.+|. ...+.|..++....
T Consensus 241 aa~l~~~~i~~~~~~~-~~~~~~~~il~~mg~~i~~~~~-~~~v~~~~~~~~~id~~~~~d~~~~~~~~~~~~~~~~~~~ 318 (419)
T 1ejd_A 241 AAAISGGKIVCRNAQP-DTLDAVLAKLREAGADIETGED-WISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAE 318 (419)
T ss_dssp HHHTTTCEEEEESCCG-GGCHHHHHHHHHTTCEEEECSS-EEEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSB
T ss_pred HHHCCCCEEEECCCCH-HHHHHHHHHHHHCCCEEEECCC-EEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHEEEC
T ss_conf 9826698699938786-8878999999975998996488-6999850564454586278566641235677641212813
Q ss_pred CCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEE
Q ss_conf 420100234564210468897526743674451267532676431576215356664210--134667631356641673
Q gi|254780927|r 259 GDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHIT 336 (430)
Q Consensus 259 g~i~i~n~~~~~~~~~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~ 336 (430)
|.-.+++-..+..+.+.+-|++||++++..++++.|.++. ++++.+++.. |. .+.++++++.++|.++|.
T Consensus 319 G~~~~~~ke~dr~~~~~~~L~klG~~v~~~~d~l~I~G~~-~l~g~~v~s~-------DHRiaMa~ava~l~~~g~~~I~ 390 (419)
T 1ejd_A 319 GTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVE-KLSGAQVMAT-------DLRASASLVLAGCIAEGTTVVD 390 (419)
T ss_dssp SEEEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCS-CCBCCEECCS-------SHHHHHHHHHHHHHSBEEEEEC
T ss_pred CCEEEEEEEEECHHHHHHHHHHCCCEEEEECCEEEEECCC-CCCCCEEECC-------CHHHHHHHHHHHHHCCCCEEEC
T ss_conf 6329999998578999999995799799989999998999-7738727138-------0899999999998399939984
Q ss_pred EECCH-HH-H-HHHHHHHHCCCEEE
Q ss_conf 20465-67-5-66788974885899
Q gi|254780927|r 337 ETIFE-NR-F-MHVQELVRLGARIS 358 (430)
Q Consensus 337 e~i~e-~R-~-~~~~eL~klG~~v~ 358 (430)
+. +. +| + .+++.|+++|++|+
T Consensus 391 ~~-~~v~kSyP~F~~~l~~LGa~Ie 414 (419)
T 1ejd_A 391 RI-YHIDRGYERIEDKLRALGANIE 414 (419)
T ss_dssp CT-HHHHHHSSSHHHHHHTTTCEEE
T ss_pred CC-EEEECCCCCHHHHHHHCCCEEE
T ss_conf 71-3897864248999996698999
No 9
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A
Probab=99.78 E-value=3.2e-17 Score=130.28 Aligned_cols=291 Identities=20% Similarity=0.261 Sum_probs=186.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC---CCCCCCCCCCCCEEEEEEECC--CCCCCCCCCC--CCCC
Q ss_conf 33201212343332103322456861489995024433---333334346661135665044--4468733233--2220
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRG---TSYTFPKVSVGATQVMMMVAS--LSHGDTSIYN--AARE 200 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g---~~i~l~~~S~q~~s~lLlaA~--~a~G~t~I~~--~~~~ 200 (430)
+..+-+...+++|++||++|+.+.+..-+.+.|.+... -...++.-.++ +..-++.+. ..++.+.+.+ ...+
T Consensus 69 ~~~~Dv~~~l~~l~~LG~~i~~~~~~~~i~i~g~g~~~~~~~~~~i~~g~SG-t~lrll~~l~~~~~~~v~~~G~~sL~~ 147 (450)
T 3nvs_A 69 LDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAFHTTQPLELFLGNAG-TAMRPLAAALCLGQGDYVLTGEPRMKE 147 (450)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECCSSCCBCSSCEEEECTTCH-HHHHHHHHHTTSSBCEEEEECSGGGGG
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHCCCH-HHHHHHHHHCCCCCCEEEECCCHHHHH
T ss_conf 9078999999999986997999579259999816876567885454313557-788888763114563497058555532
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC---CCEEECCCCCCCCCCCEECCCCHHCC--HHHHHCCCCCCCEEEE---CCCC-CCC
Q ss_conf 1599899875014544320244---32120255422223420014310000--1000001244420100---2345-642
Q gi|254780927|r 201 PEVVDLAHCLNSMGAKISGMGS---STITIQGVTSLSGTRHRILPDRIEAG--TYAMAVAMTGGDVILK---MTDS-SLL 271 (430)
Q Consensus 201 P~i~~t~~~L~~~Gv~I~~~~~---~~i~I~g~~~l~~~~~~V~~D~ssAa--~fl~Aaalt~g~i~i~---n~~~-~~~ 271 (430)
+.+...++.|++||++|+.... --++|.|.. +.+..+.+.++.||.. ..+.||....+..+|. |... ...
T Consensus 148 Rp~~~l~~~L~~lGa~i~~~~~~~~~P~~i~g~~-l~~~~~~i~~~~SsQ~~salLlaa~~~~g~t~I~~~~~~~s~p~i 226 (450)
T 3nvs_A 148 RPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTG-LQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYI 226 (450)
T ss_dssp SCCHHHHHHHHHTTCEEEESSSTTSSCEEEECCC-CCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCC-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 0487899999976989998115773416988787-668738978755328888999888735885799705766777489
Q ss_pred CCHHHHHHHCCCCEEEECCCEEEEECC-CCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCH---HHHH
Q ss_conf 104688975267436744512675326-76431576215356664210--13466763135664167320465---6756
Q gi|254780927|r 272 KTVFKVMRQTGVDIDIIDEGIRVRWNG-EKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFE---NRFM 345 (430)
Q Consensus 272 ~~~l~iL~~mGa~i~~~~~~i~V~~~~-~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e---~R~~ 345 (430)
+..+++|++||++++..+....+...+ ..+.+.++.-. .|+ ..+++++++...|..+|+....+ .+..
T Consensus 227 ~~t~~~l~~~G~~i~~~~~~~~~i~~~~~~~~~~~~~v~------~D~s~Aa~~~~aa~l~~g~i~i~~~~~~~~q~~~~ 300 (450)
T 3nvs_A 227 DITLHIMEQFGVQVINHDYQEFVIPAGQSYVSPGQFLVE------GDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQ 300 (450)
T ss_dssp HHHHHHHHHTTCCCEEETTTEEEECTTCCCBCCSEEECC------BCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGGGG
T ss_pred HHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCEEEEEC------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
T ss_conf 999998742673253168722899647434478358838------99889999999999749958993777886544579
Q ss_pred HHHHHHHCCCEEEEECCEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHHCCCEEEEECCCEECCCCC----CHHHHHHH
Q ss_conf 6788974885899978969998889851015660818-999999999985498199924330117784----87889986
Q gi|254780927|r 346 HVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDL-RASVSLVIAALAAQGETEISRVYHLDRGFE----CLEKKLSR 420 (430)
Q Consensus 346 ~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DH-RiaMa~~ia~L~a~g~~~I~~~~~i~ksyp----~f~~~L~~ 420 (430)
.++-|++||++++..++.+...+. .+++.+++..+. -.++.+++++..++|.++|.|++..+--.- .+.+.|++
T Consensus 301 ~l~il~~mG~~i~~~~~~~~~~~~-~l~~~~~d~~~~pD~~p~l~vla~~a~g~s~i~gi~~lr~KEsdRl~~~~~~L~k 379 (450)
T 3nvs_A 301 FADALEKMGAQIEWGDDYVIARRG-ELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRK 379 (450)
T ss_dssp HHHHHHHHTCEEEECSSEEEEECC-CCBCCEEECTTCTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999769859965977995068-7762346845698367789999972599843045555301302689999999997
Q ss_pred CCCEEEE
Q ss_conf 6978999
Q gi|254780927|r 421 CGALIQR 427 (430)
Q Consensus 421 LGa~Ie~ 427 (430)
+|++++.
T Consensus 380 lG~~i~~ 386 (450)
T 3nvs_A 380 VGATVEE 386 (450)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
T ss_conf 7998999
No 10
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=99.78 E-value=1.7e-17 Score=132.00 Aligned_cols=287 Identities=18% Similarity=0.243 Sum_probs=160.9
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC---CCCCCCCCCCCCEEEEEEECCC--CCCCCCCCCC--CCC
Q ss_conf 33201212343332103322456861489995024433---3333343466611356650444--4687332332--220
Q gi|254780927|r 128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRG---TSYTFPKVSVGATQVMMMVASL--SHGDTSIYNA--ARE 200 (430)
Q Consensus 128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g---~~i~l~~~S~q~~s~lLlaA~~--a~G~t~I~~~--~~~ 200 (430)
+..+-+...+++|++||++|+.+++. ++|.+.+..+ -...++.-.++ ++..++.+.+ .++.+++.+- ..+
T Consensus 43 ~~s~Dv~~~i~~L~~lG~~i~~~~~~--~~i~g~g~~~~~~~~~~i~~g~sg-t~~r~l~~~~a~~~~~v~~~G~~~l~~ 119 (427)
T 1rf6_A 43 LRGEDVLSTMQVFRDLGVEIEDKDGV--ITVQGVGMAGLKAPQNALNMGNSG-TSIRLISGVLAGADFEVEMFGDDSLSK 119 (427)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEETTE--EEEECCCSSCCCCCSSCEECTTCH-HHHHHHHHHGGGCSSEEEEECCTTGGG
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCCE--EEEEECCCCCCCCCHHHHHHCCCC-EEEECCCCCCCCCCCEECCCCCHHHHC
T ss_conf 90399999999999789989964999--999906887767862667753443-110002221112143334668866626
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC---CCEEECCCCCCCCCCCEECCCCHHCC---HHHHHCCCCCCCEEEECCCCCCCCCH
Q ss_conf 1599899875014544320244---32120255422223420014310000---10000012444201002345642104
Q gi|254780927|r 201 PEVVDLAHCLNSMGAKISGMGS---STITIQGVTSLSGTRHRILPDRIEAG---TYAMAVAMTGGDVILKMTDSSLLKTV 274 (430)
Q Consensus 201 P~i~~t~~~L~~~Gv~I~~~~~---~~i~I~g~~~l~~~~~~V~~D~ssAa---~fl~Aaalt~g~i~i~n~~~~~~~~~ 274 (430)
+.+..+++.|+++|++++..+. -.+.+.|...+++.+|.. |.+|.. ..+.|+.+..+...+.+-.+. .+..
T Consensus 120 RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~~~~~~--~~~S~~~~s~Lllaa~~~~g~~~i~~~~~~-~~~t 196 (427)
T 1rf6_A 120 RPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYEL--PIASAQVKSALMFAALQAKGESVIIEKEYT-RNHT 196 (427)
T ss_dssp SCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTTCCCCEEEC--SSCCHHHHHHHHHHHTTSSEEEEEECSSCC-CCHH
T ss_pred CCCCHHHHHHHHCCCEEEECCCCCCCEEECCCCCCCCCEEEEC--CCCCHHHHHHHHHCEEECCCCEEEECCCCH-HHHH
T ss_conf 5320123457742847983135563012114778875559953--577775511021101215884456323410-5678
Q ss_pred HHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCC-CEEEEEE-CCHHHHHHHHHH
Q ss_conf 68897526743674451267532676431576215356664210--1346676313566-4167320-465675667889
Q gi|254780927|r 275 FKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAG-ISHITET-IFENRFMHVQEL 350 (430)
Q Consensus 275 l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G-~s~I~e~-i~e~R~~~~~eL 350 (430)
++.|++||++++..++.+.|.+. ..+.+.++.- | .|+ ..+++++|+.+.| ..+|++. ..+.+...++-|
T Consensus 197 ~~~L~~~G~~i~~~~~~i~i~~~-~~~~~~~~~V---p---~D~s~a~~~l~~aal~~g~~i~i~n~~~~~~~~~~~~~l 269 (427)
T 1rf6_A 197 EDMLQQFGGHLSVDGKKITVQGP-QKLTGQKVVV---P---GDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVI 269 (427)
T ss_dssp HHHHHHTTCCCEEETTEEEEEEC-CCCBCCEEEC---C---BCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHH
T ss_pred HHHHHHCCCCCCCCCEEEEECCC-EEECCCEEEE---C---CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 99998629842123118998752-1326746991---7---977889999999996699879987789652247898865
Q ss_pred HHCCCEEEEEC------CEEEEECCCCCEEEEEEECCHH----HHHHHHHHHHHCCCEEEEECCCEECCCCC----CHHH
Q ss_conf 74885899978------9699988898510156608189----99999999985498199924330117784----8788
Q gi|254780927|r 351 VRLGARISLSG------QTARVEGVQGLRGAPVMATDLR----ASVSLVIAALAAQGETEISRVYHLDRGFE----CLEK 416 (430)
Q Consensus 351 ~klG~~v~~~~------d~l~I~G~~~l~g~~v~~~DHR----iaMa~~ia~L~a~g~~~I~~~~~i~ksyp----~f~~ 416 (430)
.+||+.++..+ +...+.....+++.+++..++- ....+++++..++|+++|.|+++++.-.. .+.+
T Consensus 270 ~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~ 349 (427)
T 1rf6_A 270 RAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVAD 349 (427)
T ss_dssp HHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGGGTGGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHH
T ss_pred HHCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHH
T ss_conf 42254112024322212453202126744222344458763344335556520357732550067778787579999999
Q ss_pred HHHHCCCEEEE
Q ss_conf 99866978999
Q gi|254780927|r 417 KLSRCGALIQR 427 (430)
Q Consensus 417 ~L~~LGa~Ie~ 427 (430)
.|+++|++++.
T Consensus 350 eL~k~G~~i~~ 360 (427)
T 1rf6_A 350 ALNSMGADITP 360 (427)
T ss_dssp HHHTTTCCEEE
T ss_pred HHHHCCCEEEE
T ss_conf 99977997999
No 11
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=99.74 E-value=1.2e-16 Score=126.44 Aligned_cols=316 Identities=21% Similarity=0.249 Sum_probs=174.7
Q ss_pred CCHHHHHHHHHH-HHHCCCCEEEECCCCH--HHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCC-CCCCCCH
Q ss_conf 646689999999-9746996999869836--99999999999749899992774114202452599943666-5864440
Q gi|254780927|r 20 GAKNASLPVMIA-SLLTSETLTLENIPDL--ADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHI-VDLTGSY 95 (430)
Q Consensus 20 gSKs~s~Ral~a-aaLa~g~s~i~n~~~s--~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 95 (430)
|....+.|.+++ +++.++++++.+-... ......+++|++||++++.++.+.. ++.+..... .......
T Consensus 92 g~sgt~~r~l~~l~~~~~~~~~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~l-------Pi~i~g~~~~~~~~i~~ 164 (445)
T 2pqc_A 92 GNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRL-------PVTLRGPKTPTPITYRV 164 (445)
T ss_dssp TTCHHHHHHHHHHHHTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEE-------EEEEECCSSCCCCEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCHHHHHHHHHHCCCEEEECCCCCC-------CEEEECCCCCCCEEEEC
T ss_conf 65567888765554057843997586341641389999999854745760579846-------77998668886679981
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC---CCCCEEEEEECC-CCCCCCCCCC
Q ss_conf 234311321102253323332104530586633320121234333210332245---686148999502-4433333334
Q gi|254780927|r 96 DLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKI---DGGYVDARVSSK-GLRGTSYTFP 171 (430)
Q Consensus 96 ~~~~~~r~s~~~l~~lla~~~~~~v~l~G~~~l~~RP~~~l~~~L~~lGa~i~~---~~g~~p~~i~g~-~l~g~~i~l~ 171 (430)
.....--++.+++.++++. +...+ .. ..-.|+ +..+-|..+|+.+.. ..+.-.+++.|. .+++.+|+.+
T Consensus 165 ~~~S~~~~s~lllaa~~~~-g~~~i--~~--~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~v~ 237 (445)
T 2pqc_A 165 PMASAQVKSAVLLAGLNTP-GITTV--IE--PIMTRD--HTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVP 237 (445)
T ss_dssp SSSCHHHHHHHHHHHHTSS-SEEEE--EE--SSCCCC--HHHHHHHHTTCCEEEEECTTSCEEEEEETTCCCBCCEEECC
T ss_pred CCCCHHHHHHHHHCCCCCC-CCEEE--EC--CCCCCC--HHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEECC
T ss_conf 5654999999995231489-95899--58--877777--99999998526654211588816999876555688478838
Q ss_pred C--CCCCCEEEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--------CEEECCCCCCCCCCCE-
Q ss_conf 3--466611356650444468-733233222015998998750145443202443--------2120255422223420-
Q gi|254780927|r 172 K--VSVGATQVMMMVASLSHG-DTSIYNAAREPEVVDLAHCLNSMGAKISGMGSS--------TITIQGVTSLSGTRHR- 239 (430)
Q Consensus 172 ~--~S~q~~s~lLlaA~~a~G-~t~I~~~~~~P~i~~t~~~L~~~Gv~I~~~~~~--------~i~I~g~~~l~~~~~~- 239 (430)
. .|+.+ .++||.+..| ..+|.|....+.-...++.|++||++++..+++ .+.+.+ ..+.+.++.
T Consensus 238 ~D~s~aa~---~~~aaa~~~g~~i~i~n~~~~~~~~~~l~iL~~mG~~i~~~~~~~~~~~~~~~i~~~~-~~l~~~~~~~ 313 (445)
T 2pqc_A 238 GDPSSTAF---PLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRS-STLKGVTVPE 313 (445)
T ss_dssp BCHHHHHH---HHHHHHHSTTCEEEEEEEECCGGGCHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEEC-CCCBCCEECG
T ss_pred CCHHHHHH---HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCEEECCCCEEEEEEEE-CCCCCCCCCC
T ss_conf 98789999---9999997699859981888662078999999985997996045476486026788763-1456631574
Q ss_pred -ECCCCHHCCH-HHHHCCCCCCCEEEECCCC----CCCC--CHHHHHHHCCCCEEEECCCEEEEECC-----CCCCEEEE
Q ss_conf -0143100001-0000012444201002345----6421--04688975267436744512675326-----76431576
Q gi|254780927|r 240 -ILPDRIEAGT-YAMAVAMTGGDVILKMTDS----SLLK--TVFKVMRQTGVDIDIIDEGIRVRWNG-----EKLRPVDV 306 (430)
Q Consensus 240 -V~~D~ssAa~-fl~Aaalt~g~i~i~n~~~----~~~~--~~l~iL~~mGa~i~~~~~~i~V~~~~-----~~l~~~di 306 (430)
--||+..... +.++|+..+|...++|+.. ++.| .+.+-|++||++++..++++.|.++. ..+.+..+
T Consensus 314 ~~~p~~~D~~p~la~~a~~a~g~s~i~gi~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~g~~~~~~~~~~~g~~i 393 (445)
T 2pqc_A 314 DRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAV 393 (445)
T ss_dssp GGGGGTGGGHHHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSCEEEECCTTCTTCSCTTCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEE
T ss_conf 55997588999999999847997699122673010017899999999977987998388699968866656667767678
Q ss_pred ECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCH-HH-H-HHHHHHHHCCCEEEEE
Q ss_conf 215356664210--13466763135664167320465-67-5-6678897488589997
Q gi|254780927|r 307 ITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFE-NR-F-MHVQELVRLGARISLS 360 (430)
Q Consensus 307 ~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e-~R-~-~~~~eL~klG~~v~~~ 360 (430)
++.. |+ ...+++++..++|+++|.+- +. +| + .+++.|++||++|++.
T Consensus 394 ~t~~------DHRiama~~iaal~~~g~~~I~~~-~~v~ksyP~f~~~l~~LGa~ie~~ 445 (445)
T 2pqc_A 394 ATHL------DHRIAMSFLVMGLVSENPVTVDDA-TMIATSFPEFMDLMAGLGAKIELS 445 (445)
T ss_dssp CCTT------CHHHHHHHHHHHTTSSSCEEESCC-TTGGGTCTTHHHHHHHHTCEEEEC
T ss_pred ECCC------CHHHHHHHHHHHHHCCCCEEEECC-EEEECCCHHHHHHHHHCCCEEEEC
T ss_conf 5899------789999999999868998999568-079670460999999579889959
No 12
>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5}
Probab=99.72 E-value=1.6e-15 Score=119.18 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=54.6
Q ss_pred HHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCCEEEEEECCH-HHHHHHHHH
Q ss_conf 468897526743674451267532676431576215356664210--13466763135664167320465-675667889
Q gi|254780927|r 274 VFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAGISHITETIFE-NRFMHVQEL 350 (430)
Q Consensus 274 ~l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G~s~I~e~i~e-~R~~~~~eL 350 (430)
.++.|++||+++++.++.+.+.++ ..+.+.+..--+ |+ ..++.++|+...|...+.+.... .| ....-+
T Consensus 202 t~~~l~~~g~~v~~~~~~i~i~g~-~~~~~~~~~V~~------D~ssAa~~~~aa~l~~g~~~i~~~~~~~~~-~~~~~l 273 (425)
T 2yvw_A 202 LIEVLKKMGAHVKVEGRSAYVKGS-ENLKGFTHSVIP------DRIEAGTFMVGAVLTDGEILLENARINHLR-AVVEKL 273 (425)
T ss_dssp HHHHHHHTTCEEEEETTEEEEECC-SSCCCCEEECCB------CHHHHHHHHHHHHHTTCEEEEESCCGGGCH-HHHHHH
T ss_pred HHHHHHHCCCCEEECCEEEEEECC-CCCCCCEEEECC------CCHHHHHHHHHHHCCCCCEEEECCCCCCCH-HHHHHH
T ss_conf 999998579631301204897167-214795389578------836777788886426984699367665312-344689
Q ss_pred HHCCCEEEEECCEEEEECCCCCEEEEEEEC-----CHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCHHHHHHHCCCEE
Q ss_conf 748858999789699988898510156608-----189999999999854981999243301177848788998669789
Q gi|254780927|r 351 VRLGARISLSGQTARVEGVQGLRGAPVMAT-----DLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSRCGALI 425 (430)
Q Consensus 351 ~klG~~v~~~~d~l~I~G~~~l~g~~v~~~-----DHRiaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f~~~L~~LGa~I 425 (430)
.++|+++..+.+...+.+...+++..+... .-=.+..|+.++..++|.+++.+.|+=+.. .+.+.|+++|++|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~a~G~~~lr~KEsdRi~--~~~~~L~klG~~v 351 (425)
T 2yvw_A 274 KLIGGEVVEENGNLRVFRKESLRACDIETQVYPGFPTDMQAQFMALLSVAKGKSRIKENIFEHRF--HHAQELNRLGANI 351 (425)
T ss_dssp HHHTEEEEEETTEEEEEECSCCBCCCEEBCSTTSBCHHHHHHHHHHHTTSBSEEEEECSSCTTCC--HHHHHHHTTTCCE
T ss_pred HHHCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCHHCCHHHHHHEEEECCCEEEEEECCHHHH--HHHHHHHHCCCEE
T ss_conf 87276589604632675224435555677768775111001321220482461899962023688--9999999789979
Q ss_pred EE
Q ss_conf 99
Q gi|254780927|r 426 QR 427 (430)
Q Consensus 426 e~ 427 (430)
|.
T Consensus 352 ~~ 353 (425)
T 2yvw_A 352 TV 353 (425)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 13
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=44.53 E-value=8.7 Score=16.69 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=23.8
Q ss_pred EECCCCCCCCCCH-HHHHHHHHHHCCCCCCC-CCCCE
Q ss_conf 5305866333201-21234333210332245-68614
Q gi|254780927|r 120 ISLPGGCAIGTRP-VDLFVDSLKSLGVVIKI-DGGYV 154 (430)
Q Consensus 120 v~l~G~~~l~~RP-~~~l~~~L~~lGa~i~~-~~g~~ 154 (430)
|+++||+.+-... +..++..+++.|..+.. ++|++
T Consensus 7 Vt~sGGEP~l~~~~l~ei~~~~k~~g~~~~l~TNG~l 43 (182)
T 3can_A 7 VTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLA 43 (182)
T ss_dssp EEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCC
T ss_pred EEEEECCHHCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 8998303509887999999999887991999817752
No 14
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA; 1.55A {Thermus thermophilus HB8} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=36.17 E-value=11 Score=16.09 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 83699999999999749899992774114202452599943666586444023431132110225332333210453058
Q gi|254780927|r 45 PDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPG 124 (430)
Q Consensus 45 ~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G 124 (430)
+..+++..+.++++..|..++++... .+.+...... ..+.-....+...++|..|. +|...|
T Consensus 47 ~t~~El~g~~~a~~~~~~~~~~~~~~---------~~d~~~~~g~--------~~~~~~~s~~aa~v~A~~g~-~v~~hg 108 (329)
T 2elc_A 47 ERPHEIAAMARAMREAARPLRVHRRP---------LLDIVGTGGD--------GKGLMNLSTLAALVAAAGGV-AVAKHG 108 (329)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCCCSS---------EEEEEECCCC--------SSCCCCCHHHHHHHHHHTTC-EEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCCCCC--------CCCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf 39999999999999856755424677---------6533478999--------87765317889999853793-698227
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 6633320121234333210332245
Q gi|254780927|r 125 GCAIGTRPVDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 125 ~~~l~~RP~~~l~~~L~~lGa~i~~ 149 (430)
+..+..+- ...+.|+.+|+.+..
T Consensus 109 ~~~~~~~~--g~~d~le~lg~~~~~ 131 (329)
T 2elc_A 109 NRAASSRA--GSADLLEALGVDLEA 131 (329)
T ss_dssp CCCTTTTC--SHHHHHHHTTCCTTC
T ss_pred CCCCCCCC--CHHHHHHHCCCCCCC
T ss_conf 99899662--379998641577467
No 15
>2bpq_A Anthranilate phosphoribosyltransferase; tryptophan biosynthesis, transferase phosphoribosyltransferase, amino-acid biosynthesis; 1.9A {Mycobacterium tuberculosis} PDB: 1zvw_A*
Probab=35.93 E-value=6 Score=17.77 Aligned_cols=87 Identities=18% Similarity=0.145 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 83699999999999749899992774114202452599943666586444023431132110225332333210453058
Q gi|254780927|r 45 PDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPG 124 (430)
Q Consensus 45 ~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G 124 (430)
+..+++..+.++++..+-.+..+... ...+.+... ++...+.-..-.++.+++|.+|. +|...|
T Consensus 74 et~~Ei~g~~~am~~~~~~~~~~~~~-------~~~iD~~gt--------gg~~~~t~niS~~~a~vlAa~G~-~V~kHG 137 (373)
T 2bpq_A 74 PTADEVGELAGVMLSHAHPLPADTVP-------DDAVDVVGT--------GGDGVNTVNLSTMAAIVVAAAGV-PVVKHG 137 (373)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCTTCSC-------TTCEEEEEC--------CBTTBCCHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCEECCC--------CCCCCCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf 79999999999999848846776678-------877224688--------88987875217899999871798-377777
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 6633320121234333210332245
Q gi|254780927|r 125 GCAIGTRPVDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 125 ~~~l~~RP~~~l~~~L~~lGa~i~~ 149 (430)
+..+..+ .-..+.|+.+|.++..
T Consensus 138 ~r~~~~~--~Gs~D~Le~lg~~~~~ 160 (373)
T 2bpq_A 138 NRAASSL--SGGADTLEALGVRIDL 160 (373)
T ss_dssp CCGGGSS--SCCHHHHHHTTCCCCC
T ss_pred CCCCCCC--CCHHHHHHHCCCCCCC
T ss_conf 8999885--0755676640255469
No 16
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=33.26 E-value=20 Score=14.40 Aligned_cols=84 Identities=23% Similarity=0.349 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 36999999999997498999927741142024525999436665864440234311321102253323332104530586
Q gi|254780927|r 46 DLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGG 125 (430)
Q Consensus 46 ~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G~ 125 (430)
..+++..+.++++..|.++++..... ...+.....+-. +. ..|. .+.+++|.+|. +|...|+
T Consensus 78 t~~Eiag~~~am~~~~~~i~~~~~~~------~~~vD~~gTGGd-----G~-----niSt-~~a~v~Aa~G~-~VaKhGn 139 (474)
T 1uou_A 78 DLEETSVLTQALAQSGQQLEWPEAWR------QQLVDKHSTGGV-----GD-----KVSL-VLAPALAACGC-KVPMISG 139 (474)
T ss_dssp CHHHHHHHHHHHHTTSCCCCCCGGGG------GGBEEEEESCCT-----TC-----CHHH-HHHHHHHTTTC-BEEEECC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCC------CCEEECCCCCCC-----CC-----HHHH-HHHHHHHHCCC-CHHHCCC
T ss_conf 99999999999998488266764578------873405899998-----72-----2779-99999997698-3321268
Q ss_pred CCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 633320121234333210-332245
Q gi|254780927|r 126 CAIGTRPVDLFVDSLKSL-GVVIKI 149 (430)
Q Consensus 126 ~~l~~RP~~~l~~~L~~l-Ga~i~~ 149 (430)
-++...- --.|.|+.+ |+++..
T Consensus 140 R~~ss~~--GSaD~LEal~Gv~i~~ 162 (474)
T 1uou_A 140 RGLGHTG--GTLDKLESIPGFNVIQ 162 (474)
T ss_dssp CCBTTBC--CHHHHHTTSTTCCCCC
T ss_pred CCCCCCC--CHHHHHHHCCCCCCCC
T ss_conf 8889886--5699999723977677
No 17
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Nostoc SP}
Probab=31.79 E-value=10 Score=16.21 Aligned_cols=93 Identities=14% Similarity=0.007 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 369999999999974989999277411-4202452599943666586444023431132110225332333210453058
Q gi|254780927|r 46 DLADVKLLIRILRSHGVEILSDSSYND-QNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPG 124 (430)
Q Consensus 46 ~s~D~~~~~~~l~~lG~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G 124 (430)
..+++..+.+++++.+-.+.+...... ........+...+ .++...+.-....++.+++|..|. +|...|
T Consensus 75 T~eEi~g~~~am~~~~~~~~~~~~~~~~~~~~~~~~vD~~g--------tgG~g~~t~nis~~~a~v~A~~G~-~V~khG 145 (374)
T 1vqu_A 75 SADELTGMAEVLQSQSKMGTGENYSQLPITNSPFSIIDTCG--------TGGDGSSTFNISTAVAFVAAAYGV-PVAKHG 145 (374)
T ss_dssp CHHHHHHHHHHHHTTCCC-----------CCSSSCCEEEEE--------CC---CCBCCHHHHHHHHHHHTTC-CEEEEE
T ss_pred CHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCEEECC--------CCCCCCCCCCCCHHHHHHHHHCCC-EEEEEC
T ss_conf 99999999999998540013222445777778987545461--------798986763342888999983898-288744
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 6633320121234333210332245
Q gi|254780927|r 125 GCAIGTRPVDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 125 ~~~l~~RP~~~l~~~L~~lGa~i~~ 149 (430)
+..+..+ ....+.|+.+|..+..
T Consensus 146 ~r~~~~~--~Gs~d~le~lg~~~~~ 168 (374)
T 1vqu_A 146 NRSASSL--TGSADVLEALGVNLGA 168 (374)
T ss_dssp ECC--CT--TCHHHHHHHTTCCTTC
T ss_pred CCCCCCC--CCHHHHHHHHCCCCCC
T ss_conf 8888876--4789999752012358
No 18
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=28.42 E-value=17 Score=14.86 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 83699999999999749899992774114202452599943666586444023431132110225332333210453058
Q gi|254780927|r 45 PDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPG 124 (430)
Q Consensus 45 ~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G 124 (430)
...+++..+.++++..+..+.+.... ...+....... .++...| .++.+++|.+|. +|...|
T Consensus 60 ~t~~El~g~~~am~~~~~~~~~~~~~---------~~d~~g~gg~~-------~~t~niS-~~~a~ilAa~G~-~V~khg 121 (345)
T 1khd_A 60 ERPEEIAGAASALLADAQPFPRPDYD---------FADIVGTGGDG-------TNSINIS-TASAFVAASCGA-KVAKHG 121 (345)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCCSSC---------CEEEEECCCCS-------SCBCCCH-HHHHHHHHHHTC-CEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCC---------CCEECCCCCCC-------CCCCCHH-HHHHHHHHHCCC-CEEEEC
T ss_conf 79999999999999848868888899---------78036699999-------8874508-999999985798-567547
Q ss_pred CCCCCC-CHHHHHHHHHHHCCCCCCC
Q ss_conf 663332-0121234333210332245
Q gi|254780927|r 125 GCAIGT-RPVDLFVDSLKSLGVVIKI 149 (430)
Q Consensus 125 ~~~l~~-RP~~~l~~~L~~lGa~i~~ 149 (430)
+..+.. +- -.-+.|+.+|.++..
T Consensus 122 ~r~~~s~~g--~~~~ll~~lG~~~~~ 145 (345)
T 1khd_A 122 NRSVCQPLA--GSCDLLQAFGIRLDM 145 (345)
T ss_dssp CC-----------CHHHHHTTCCTTC
T ss_pred CCCCCCCCC--CHHHHHHHCCCCCCC
T ss_conf 987898754--377698743876158
No 19
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 3cin_A*
Probab=22.98 E-value=30 Score=13.23 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=21.8
Q ss_pred HCCHHHHHCCC-----CCCCEEEECCCCCCC---CCHHHHHHHCCCCEE
Q ss_conf 00010000012-----444201002345642---104688975267436
Q gi|254780927|r 246 EAGTYAMAVAM-----TGGDVILKMTDSSLL---KTVFKVMRQTGVDID 286 (430)
Q Consensus 246 sAa~fl~Aaal-----t~g~i~i~n~~~~~~---~~~l~iL~~mGa~i~ 286 (430)
+++.+.+.||+ ..| +-.=|.-++.. ..+.+..++.|..+-
T Consensus 170 ~aS~~YA~AAl~~aal~aG-~~fvN~~P~~~a~~Pal~ela~~~gvpi~ 217 (394)
T 1vjp_A 170 TATQVYAYAAALYANKRGG-AAFVNVIPTFIANDPAFVELAKENNLVVF 217 (394)
T ss_dssp CHHHHHHHHHHHHHHHHTC-EEEEECSSSCSTTCHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHHHHCCC-CCEECCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 8689999999987653169-84344778445686899999997399677
No 20
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3}
Probab=21.71 E-value=31 Score=13.07 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=21.8
Q ss_pred HHHHHCCCEEEEECCEEEEECCCCCEEEEEE
Q ss_conf 8897488589997896999888985101566
Q gi|254780927|r 348 QELVRLGARISLSGQTARVEGVQGLRGAPVM 378 (430)
Q Consensus 348 ~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~ 378 (430)
.-|.+||.+++..++.+.|.-| .++. ++.
T Consensus 305 ~iL~~Lgf~v~~~~~~~~V~vP-~~R~-DI~ 333 (348)
T 2cxi_A 305 ELLEKMMYEVEISRGRAKLKYP-AFRD-DIM 333 (348)
T ss_dssp HHHHHTTCEEEEETTEEEEEEC-TTCC-CCC
T ss_pred HHHHHCCCEEEECCCEEEEECC-CCCC-CCC
T ss_conf 9999879979965982899899-9856-669
No 21
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=20.63 E-value=16 Score=14.90 Aligned_cols=145 Identities=10% Similarity=0.028 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 83699999999999749899992774114202452599943666586444023431132110225332333210453058
Q gi|254780927|r 45 PDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPG 124 (430)
Q Consensus 45 ~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~~~l~~lla~~~~~~v~l~G 124 (430)
...+++..+.+++|..+.++++.. .++..+.+ .. -.+.. -+..+.++++..+. +|...|
T Consensus 50 et~~El~g~~~am~~~~~~~~~~~---~id~~~~g--------g~-------~~~~~--~~~~~~~~~aa~g~-~V~khg 108 (345)
T 1o17_A 50 ESKNEIVGFARAMRELAIKIDVPN---AIDTAGTG--------GD-------GLGTV--NVSTASAILLSLVN-PVAKHG 108 (345)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCTT---CEECCC-------------------CCCBC--CHHHHHHHHHTTTS-CEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCC--------CC-------CCCCC--HHHHHHHHHHHHCC-EEEEEC
T ss_conf 299999999999998488787554---25766679--------98-------50134--00688899886268-067657
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCC----------CCCEEEEEECCCCCCCC-------CCCCCCCCCCEEEEEEECCC
Q ss_conf 66333201212343332103322456----------86148999502443333-------33343466611356650444
Q gi|254780927|r 125 GCAIGTRPVDLFVDSLKSLGVVIKID----------GGYVDARVSSKGLRGTS-------YTFPKVSVGATQVMMMVASL 187 (430)
Q Consensus 125 ~~~l~~RP~~~l~~~L~~lGa~i~~~----------~g~~p~~i~g~~l~g~~-------i~l~~~S~q~~s~lLlaA~~ 187 (430)
+.++..+ .-..|.|+.+|+.+..+ .|...+ ....+.+.- -.+...+.--+..-|+. |.
T Consensus 109 ~r~~~~~--~Gs~D~le~lgi~~~~s~~~~~~~l~~~g~~f~--~~~~~~P~l~~l~~~R~~Lg~rt~~n~l~~l~n-P~ 183 (345)
T 1o17_A 109 NRAVSGK--SGSADVLEALGYNIIVPPERAKELVNKTNFVFL--FAQYYHPAMKNVANVRKTLGIRTIFNILGPLTN-PA 183 (345)
T ss_dssp CCCSSSS--CSHHHHHHHHTBCCCCCHHHHHHHHHHHSEEEE--EHHHHCGGGGGTHHHHHHHCSCCGGGGCGGGCC-TT
T ss_pred CCCCCCC--CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEC--CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC-CC
T ss_conf 8765775--467999987077656787889999973365331--476557888999999998687763466788638-53
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 46873323322201599899875014544
Q gi|254780927|r 188 SHGDTSIYNAAREPEVVDLAHCLNSMGAK 216 (430)
Q Consensus 188 a~G~t~I~~~~~~P~i~~t~~~L~~~Gv~ 216 (430)
.-...+......+|.+.....++..|++
T Consensus 184 -~~~~~~~Gv~~~~~~~~~~~~~~~lg~~ 211 (345)
T 1o17_A 184 -NAKYQLMGVFSKDHLDLLSKSAYELDFN 211 (345)
T ss_dssp -CCSEEEEECSSHHHHHHHHHHHTTSCCS
T ss_pred -CCCCCEEEEECHHHHHHHHHHHHHCCCC
T ss_conf -3330201231256655679999973962
Done!