HHSEARCH alignment of GI: 254780927 and SCOP domain: d1rf6a_

Alignment
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.79  E-value=5e-18  Score=133.91  Aligned_cols=287  Identities=17%  Similarity=0.218  Sum_probs=170.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC---CCCCCCCCCCCCEEEEEEECC--CCCCCCCCCCC--CCC
Q ss_conf             33201212343332103322456861489995024433---333334346661135665044--44687332332--220
Q gi|254780927|r  128 IGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRG---TSYTFPKVSVGATQVMMMVAS--LSHGDTSIYNA--ARE  200 (430)
Q Consensus       128 l~~RP~~~l~~~L~~lGa~i~~~~g~~p~~i~g~~l~g---~~i~l~~~S~q~~s~lLlaA~--~a~G~t~I~~~--~~~  200 (430)
                      +..+-+...+++|++||++|+.+++.+  +|.+.+..+   -...++.-.++ +...++.+.  ..++.+.+.+-  ..+
T Consensus        43 ~~s~Dv~~~~~~L~~lG~~i~~~~~~~--~I~g~g~~~~~~~~~~i~~~~sg-t~~r~l~~l~a~~~~~v~~~G~~~l~~  119 (427)
T d1rf6a_          43 LRGEDVLSTMQVFRDLGVEIEDKDGVI--TVQGVGMAGLKAPQNALNMGNSG-TSIRLISGVLAGADFEVEMFGDDSLSK  119 (427)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEETTEE--EEECCCSSCCCCCSSCEECTTCH-HHHHHHHHHGGGCSSEEEEECCTTGGG
T ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCEE--EEEECCCCCCCCCHHHHHHCCCC-EEECCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             904999999999997889899759999--99916887767861556531443-000012222245431120479813036


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCC---CCEEECCCCCCCCCCCEECCCCHHCC--H-HHHHCCCCCCCEEEECCCCCCCCCH
Q ss_conf             1599899875014544320244---32120255422223420014310000--1-0000012444201002345642104
Q gi|254780927|r  201 PEVVDLAHCLNSMGAKISGMGS---STITIQGVTSLSGTRHRILPDRIEAG--T-YAMAVAMTGGDVILKMTDSSLLKTV  274 (430)
Q Consensus       201 P~i~~t~~~L~~~Gv~I~~~~~---~~i~I~g~~~l~~~~~~V~~D~ssAa--~-fl~Aaalt~g~i~i~n~~~~~~~~~  274 (430)
                      +.+..+++.|+++|++|+..+.   -.+.+.|...+++.++.  .|.+|+-  + .+.|+.+..|...+.+-.+ ..+..
T Consensus       120 RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~~~i~--~~~~S~q~ts~lllaa~~~~g~~~i~~~~~-~~~~t  196 (427)
T d1rf6a_         120 RPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYE--LPIASAQVKSALMFAALQAKGESVIIEKEY-TRNHT  196 (427)
T ss_dssp             SCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTTCCCCEEE--CSSCCHHHHHHHHHHHTTSSEEEEEECSSC-CCCHH
T ss_pred             CCCCCCCHHHHHCCCEEEECCCCCCEEEECCCCCCCCCEEEE--CCCCCHHHHHHHHHHHHCCCCCEEEECCCC-CHHHH
T ss_conf             555420006876394798303556202302477887445995--357767564435542220589435532431-07789


Q ss_pred             HHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCC-CEEEEEE-CCHHHHHHHHHH
Q ss_conf             68897526743674451267532676431576215356664210--1346676313566-4167320-465675667889
Q gi|254780927|r  275 FKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDL--QAQFMAMMCCAAG-ISHITET-IFENRFMHVQEL  350 (430)
Q Consensus       275 l~iL~~mGa~i~~~~~~i~V~~~~~~l~~~di~~~~~pg~~~D~--~p~la~laa~A~G-~s~I~e~-i~e~R~~~~~eL  350 (430)
                      ++.|++||++++..++.++|.+. ..+.+.++.-      +.|+  ..+++++++.+.| +-+|++. ..+.+...++-|
T Consensus       197 ~~~L~~~G~~i~~~~~~i~i~~~-~~l~~~~~~V------~~D~s~A~~~l~aaal~~g~~i~i~~~~~~~~~~~~~~~l  269 (427)
T d1rf6a_         197 EDMLQQFGGHLSVDGKKITVQGP-QKLTGQKVVV------PGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVI  269 (427)
T ss_dssp             HHHHHHTTCCCEEETTEEEEEEC-CCCBCCEEEC------CBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCHHHHHH
T ss_pred             HHHHHHCCCCCCCCCEEEEECCC-CEECCCEEEC------CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             99999739975223128998863-1116746985------8976789999999996799879987789760016788764


Q ss_pred             HHCCCEEEEECCE------EEEECCCCCEEEEEEECCHH----HHHHHHHHHHHCCCEEEEECCCEECCCCCCH----HH
Q ss_conf             7488589997896------99988898510156608189----9999999998549819992433011778487----88
Q gi|254780927|r  351 VRLGARISLSGQT------ARVEGVQGLRGAPVMATDLR----ASVSLVIAALAAQGETEISRVYHLDRGFECL----EK  416 (430)
Q Consensus       351 ~klG~~v~~~~d~------l~I~G~~~l~g~~v~~~DHR----iaMa~~ia~L~a~g~~~I~~~~~i~ksyp~f----~~  416 (430)
                      .+||+.++..+..      ..+.....+++.+++..+..    ..+.++++++.++|+++|.|+++++.-+.|-    .+
T Consensus       270 ~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~d~~p~la~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~  349 (427)
T d1rf6a_         270 RAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVAD  349 (427)
T ss_dssp             HHTTCEEEEEEEETTTTEEEEEEECCCCBCCEECTTSGGGTGGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHH
T ss_pred             HCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf             11453034113323222340233126644222344558872345557777653157840002078888899899999999


Q ss_pred             HHHHCCCEEEE
Q ss_conf             99866978999
Q gi|254780927|r  417 KLSRCGALIQR  427 (430)
Q Consensus       417 ~L~~LGa~Ie~  427 (430)
                      .|+++|++++.
T Consensus       350 eL~klG~~~~~  360 (427)
T d1rf6a_         350 ALNSMGADITP  360 (427)
T ss_dssp             HHHTTTCCEEE
T ss_pred             HHHHCCCEEEE
T ss_conf             99977997999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Streptococcus pneumoniae [TaxId: 1313]