RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(430 letters)
>gnl|CDD|181804 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 674 bits (1742), Expect = 0.0
Identities = 226/428 (52%), Positives = 300/428 (70%), Gaps = 11/428 (2%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
MD++ I GG L+G + ISGAKNA+LP++ ASLL E +TL N+PDL+DV+ +I +LRS
Sbjct: 1 MDKLVIEGGKPLSGEVTISGAKNAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSL 60
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
G ++ ++ T+ +I + Y+LV KMRAS V+GPLLAR G A++
Sbjct: 61 GAKV----EFDGNG-----TVTIDASNINNTEAPYELVKKMRASILVLGPLLARFGEAKV 111
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180
SLPGGCAIG RPVDL + L++LG I+I+ GYV+A+ L+G SVGAT+
Sbjct: 112 SLPGGCAIGARPVDLHLKGLEALGAEIEIEHGYVEAKAD-GRLKGAHIVLDFPSVGATEN 170
Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240
++M A L+ G T I NAAREPE+VDLA+ LN MGAKISG G+ TITI+GV L G H +
Sbjct: 171 ILMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAKISGAGTDTITIEGVERLHGAEHTV 230
Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
+PDRIEAGT+ +A A+TGGDV ++ L+ V +R+ G +I+ ++GIRV G +
Sbjct: 231 IPDRIEAGTFLVAAAITGGDVTIRGARPEHLEAVLAKLREAGAEIEEGEDGIRVDMPG-R 289
Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360
L+ VD+ TAP+PGFPTD+QAQFMA++ A G S ITETIFENRFMHV EL+R+GA I +
Sbjct: 290 LKAVDIKTAPYPGFPTDMQAQFMALLTQAEGTSVITETIFENRFMHVPELIRMGADIEVD 349
Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420
G TA V GV+ L GAPVMATDLRAS SLV+A L A+G T + R+YHLDRG+E +E+KL
Sbjct: 350 GHTAVVRGVEKLSGAPVMATDLRASASLVLAGLVAEGTTIVDRIYHLDRGYERIEEKLRA 409
Query: 421 CGALIQRI 428
GA I+R+
Sbjct: 410 LGADIERV 417
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Length = 416
Score = 538 bits (1389), Expect = e-154
Identities = 223/427 (52%), Positives = 291/427 (68%), Gaps = 11/427 (2%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
MD++ + GG L+G + ISGAKNA+LP++ A+LLT E +TL N+PDL+DVK + +LR+
Sbjct: 1 MDKLVVEGGKPLSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNL 60
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
G + D N+ + + I Y+LV KMRAS V+GPLLAR G A +
Sbjct: 61 GARVERD---NNTLEINTPN-------INSTEAPYELVRKMRASILVLGPLLARFGKAVV 110
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180
SLPGGCAIG RPVDL + LK+LG I I+ GYV A L G KVSVGAT+
Sbjct: 111 SLPGGCAIGARPVDLHLKGLKALGAEIVIEDGYVYASAK-GRLVGAHIVLDKVSVGATEN 169
Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240
++M A L+ G T I NAAREPE+VDL LN MGAKI+G GS+TITI+GV L GT H +
Sbjct: 170 IIMAAVLAEGTTVIENAAREPEIVDLCEFLNKMGAKITGAGSNTITIEGVEKLHGTEHSV 229
Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
+PDRIEAGT+ +A A+TGG++ +K L+ V +R+ G ++++ + GIRV ++
Sbjct: 230 IPDRIEAGTFLVAAAITGGEITIKNVRPDHLRAVLAKLREIGAEVEVDENGIRVDMRQKR 289
Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360
L+ VD+ T P+PGFPTDLQAQFMA++ A G S ITET+FENRFMHV EL+R+GA I L
Sbjct: 290 LKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITETVFENRFMHVDELIRMGANIKLE 349
Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420
G TA + GV+ L GA VMATDLRA +LV+A L A+GET + VYHLDRG+E LE+KL
Sbjct: 350 GNTAVIHGVEQLSGAEVMATDLRAGAALVLAGLVAEGETIVHNVYHLDRGYEDLEEKLRA 409
Query: 421 CGALIQR 427
GA I+R
Sbjct: 410 LGAKIER 416
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 426 bits (1097), Expect = e-120
Identities = 167/429 (38%), Positives = 249/429 (58%), Gaps = 13/429 (3%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
M++I I GG L+G + ISGAKN+++ ++ A++L +TL+ +PD++DV L+ IL
Sbjct: 1 MEKIVINGGKPLSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEEL 60
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
G ++ K T+ I + V +RAS++ +G LL R A +
Sbjct: 61 GGKV----------KRDGDTLEIDPTGIQSMPLPNGKVKSLRASYYFMGALLGRFKKAVV 110
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180
LPGGC +G RP+D + ++LG + +GG + + + L+G VSVGAT
Sbjct: 111 GLPGGCDLGPRPIDQHIKGFEALGAEVTNEGGAI--YLKADELKGAHIYLDVVSVGATIN 168
Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240
+M+ A + G T I NAA+EPE++D+A LN+MGA I G G+ I I+GV L G RH +
Sbjct: 169 IMLAAVKAKGRTVIENAAKEPEIIDVATLLNNMGANIKGAGTDVIRIEGVDELHGCRHTV 228
Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
+PDRIEAGTY + A GG V + L++ + + GV +++ ++ I V
Sbjct: 229 IPDRIEAGTYMILAAACGGGVTINNVIPEHLESFIAKLEEMGVRVEVNEDSIFVE-KQGN 287
Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360
L+ VD+ T P+PGF TDLQ ++ A G S +T+TI+E RF HV EL R+GA I +
Sbjct: 288 LKAVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTDTIYEKRFKHVDELKRMGANIKVE 347
Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420
G++A + G L GA V ATDLRA +LVIA L A+G TEI+ + H+DRG+ + +KL
Sbjct: 348 GRSAIITGPSKLTGAKVKATDLRAGAALVIAGLMAEGVTEITNIEHIDRGYSNIIEKLKA 407
Query: 421 CGALIQRIK 429
GA I R +
Sbjct: 408 LGADIWREE 416
>gnl|CDD|162316 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
Sequences scoring between the trusted and noise cutoffs
include fragmentary and aberrant sequences in which
generally well-conserved motifs are missing or altererd,
but no example of a protein known to have a different
function.
Length = 409
Score = 69.2 bits (170), Expect = 2e-12
Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 48/411 (11%)
Query: 14 GTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQ 73
G I G+K+ + +I + L + N+ D + LR+ G +I D
Sbjct: 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKI------EDG 54
Query: 74 NKSYSSTMHFRCR--HIVDLTGSYDLVSKMRASFWVIGPLLAREGYARISLPGGCAIGTR 131
+ +DL S + R + G L +G ++ G ++ R
Sbjct: 55 GEVAVIEGVGGKEPQAELDLGNS---GTTAR---LLTGVLALADGEVVLT--GDESLRKR 106
Query: 132 PVDLFVDSLKSLGVVI--KIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV---MMMVAS 186
P+ VD+L+ LG I GG + +S G Y S +Q +++ A
Sbjct: 107 PMGRLVDALRQLGAEISSLEGGGSLPLTISGPLPGGIVYISGSAS---SQYKSALLLAAP 163
Query: 187 LSHGDTSIYNAAREPEV--VDLA-HCLNSMGAKISGMGSSTITIQGVTSLSGTRHRILPD 243
+++ L S G ++ I + G + + D
Sbjct: 164 ALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDGRKIVVPGGQKYGPQGYDVPGD 223
Query: 244 RIEAGTYAMAVAMTGGDVILK---MTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
A + A A+TGG V L+ + + K + V+ + G DI++ ++ + V
Sbjct: 224 YSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVE-GASG 282
Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHIT--------ETIFENRFMHV-QELV 351
L+ + + D + A G++ IT E+ +R + +EL
Sbjct: 283 LKGIKIDMDDMI----DELPTLAVLAAFAEGVTRITGAEELRVKES---DRIAAIAEELR 335
Query: 352 RLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEI 401
+LG + + G + L+GA V D R +++ +A L A+GE I
Sbjct: 336 KLGVDVEEFEDGLYIRGKKELKGAVVDTFGDHRIAMAFAVAGLVAEGEVLI 386
Score = 46.1 bits (110), Expect = 2e-05
Identities = 64/298 (21%), Positives = 109/298 (36%), Gaps = 35/298 (11%)
Query: 137 VDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIY- 195
+D+L++LG I+ G G + S +++ V +L+ G+ +
Sbjct: 41 LDALRALGAKIEDGGEVAVIE-GVGGKEPQAELDLGNSGTTARLLTGVLALADGEVVLTG 99
Query: 196 -NAAREPEVVDLAHCLNSMGAKIS---GMGSSTITIQGVTSLSGTRHRILPDRIEAGTYA 251
+ R+ + L L +GA+IS G GS +TI G L G I + Y
Sbjct: 100 DESLRKRPMGRLVDALRQLGAEISSLEGGGSLPLTISG--PLPGGIVYISGSA--SSQYK 155
Query: 252 MAVAMTG---GDVILKMTDSSLL------KTVFKVMRQTGVDIDIIDEGIRVRWNGEKLR 302
A+ + V + + L T+ ++ GV+++ D V G+K
Sbjct: 156 SALLLAAPALQAVGITIVGEPLKSRPYIEITL-DLLGSFGVEVERSDGRKIVVPGGQKYG 214
Query: 303 PVDVITAPFPGFPTDLQAQFMAMMCCAAG----ISHITE--TIFENRFMHVQELVRLGAR 356
P A F G + ++ T + + V L +GA
Sbjct: 215 PQGYDVPGDYS-----SAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIV--LEEMGAD 267
Query: 357 ISLSGQTARVEGVQGLRGAPV-MATDLRASVSLVIAALAAQGETEISRVYHLDRGFEC 413
I + VEG GL+G + M + +L + A A+G T I+ L R E
Sbjct: 268 IEVEEDDLIVEGASGLKGIKIDMDDMIDELPTLAVLAAFAEGVTRITGAEEL-RVKES 324
Score = 34.6 bits (80), Expect = 0.054
Identities = 52/252 (20%), Positives = 91/252 (36%), Gaps = 48/252 (19%)
Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSL------- 233
+++A+L+ G+T + N R + + L ++GAKI G I+GV
Sbjct: 15 ALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIE-DGGEVAVIEGVGGKEPQAELD 73
Query: 234 ---SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSL----LKTVFKVMRQTGVDID 286
SGT R+L V +TG D SL + + +RQ G +I
Sbjct: 74 LGNSGTTARLLTG--VLALADGEVVLTG--------DESLRKRPMGRLVDALRQLGAEIS 123
Query: 287 IIDEGIRVRWNGEKLRPVDVITAPFPG----FPTDLQAQFM-AMMCCAAGISHITETIFE 341
++ G + P+ I+ P PG +Q+ A++ A + + TI
Sbjct: 124 SLEGGGSL--------PL-TISGPLPGGIVYISGSASSQYKSALLLAAPALQAVGITIVG 174
Query: 342 NR-------FMHVQELVRLGARISLS-GQTARVEGVQGLRGAPV-MATDLRASVSLVIAA 392
+ + L G + S G+ V G Q + D ++ + AA
Sbjct: 175 EPLKSRPYIEITLDLLGSFGVEVERSDGRKIVVPGGQKYGPQGYDVPGDYSSAAFFLAAA 234
Query: 393 LAAQGETEISRV 404
G + +
Sbjct: 235 AITGGRVTLENL 246
>gnl|CDD|179423 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 55.2 bits (134), Expect = 3e-08
Identities = 106/462 (22%), Positives = 173/462 (37%), Gaps = 114/462 (24%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
M + II + L+GT+ + G+K+ S ++ + L T+ N+ D + LR+
Sbjct: 2 MMMLLIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRAL 61
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSK------------MRASFWVI 108
GVEI D +V+ G L MR +
Sbjct: 62 GVEIEDD------------------EVVVEGVGGGGLKEPEDVLDCGNSGTTMR--L-LT 100
Query: 109 GPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIK-IDGGYVDARVS-SKGLRGT 166
G L + G ++ G ++ RP+ +D L+ +G I+ D GY+ + K
Sbjct: 101 GLLALQPGEVVLT--GDESLRKRPMGRLLDPLRQMGAKIEGRDEGYLPLTIRGGKKGGPI 158
Query: 167 SYTFPKVSVGATQV--MMMVASL-SHGDTSIYNAAREPEV----VDL-AHCLNSMGAKIS 218
Y P S V ++++A L + GDT EP ++ L + G ++
Sbjct: 159 EYDGPVSS---QFVKSLLLLAPLFAEGDTET--TVIEPLPSRPHTEITLRMLRAFGVEVE 213
Query: 219 ---GMGSSTITIQGVTSLSGTRHRILPDRIEAGTYAMAVAMTGG-DVILK-------MTD 267
G G I I+G L G + D A + A A+TGG +V +
Sbjct: 214 NVEGWGYRRIVIKGGQRLRGQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGG 273
Query: 268 SSLLKTVFKVMRQTGVDIDIIDE--------GIRVRWNGEKLRPVDVITAPFPGFPTDLQ 319
++ V+ + G DI+I +E IRVR +L+ +D+ P D
Sbjct: 274 KAI----IDVLEKMGADIEIENEREGGEPVGDIRVR--SSELKGIDI---DIPDII-DE- 322
Query: 320 AQFM---AMMCCAAGISHIT--------ETIFENRF--MHVQELVRLGARISLSGQTARV 366
+ A G + I ET +R M EL +LGA +
Sbjct: 323 --APTLAVLAAFAEGTTVIRNAEELRVKET---DRIAAM-ATELRKLGAEV--------E 368
Query: 367 EG-----VQGLRGAPVMAT--DLRASVSLVIAALAAQGETEI 401
E + G A V+ + D R +++ IA LAA+G I
Sbjct: 369 ETEDGLIITGGPLAGVVDSYGDHRIAMAFAIAGLAAEGPVTI 410
Score = 32.1 bits (74), Expect = 0.26
Identities = 68/351 (19%), Positives = 125/351 (35%), Gaps = 90/351 (25%)
Query: 133 VDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVG----ATQVMMMVASLS 188
+++L++LGV +I+ V V G G + G +++ + +L
Sbjct: 51 TLATLNALRALGV--EIEDDEV--VVEGVGGGGLKEPEDVLDCGNSGTTMRLLTGLLALQ 106
Query: 189 HGDTSI---YNAAREP--EVVDLAHCLNSMGAKISGMGSST--ITIQGVTSLSGTRHRIL 241
G+ + + + P ++D L MGAKI G +TI+G
Sbjct: 107 PGEVVLTGDESLRKRPMGRLLDP---LRQMGAKIEGRDEGYLPLTIRGGKKGGPIE---- 159
Query: 242 PDRIEAGTYAMAVA-------------MTGGDVILKMTDSSLLKT------VFKVMRQTG 282
Y V+ GD + + L + +++R G
Sbjct: 160 --------YDGPVSSQFVKSLLLLAPLFAEGDTETTVIEP--LPSRPHTEITLRMLRAFG 209
Query: 283 VDIDIIDE---GIRVRWNGEKLRPVDVITAPFPGFPTDL-QAQFMAMMCCAAGISHIT-E 337
V+++ ++ V G++LR D+ P D A F G S +T
Sbjct: 210 VEVENVEGWGYRRIVIKGGQRLRGQDITV------PGDPSSAAFFLAAAAITGGSEVTIT 263
Query: 338 TIFEN------RFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRA-SVSL-- 388
+ N + V L ++GA I + + E V +R V +++L+ + +
Sbjct: 264 NVGLNSTQGGKAIIDV--LEKMGADIEIENEREGGEPVGDIR---VRSSELKGIDIDIPD 318
Query: 389 ------VIAALA--AQGETEISRVYHLDRGFEC-----LEKKLSRCGALIQ 426
+A LA A+G T I L R E + +L + GA ++
Sbjct: 319 IIDEAPTLAVLAAFAEGTTVIRNAEEL-RVKETDRIAAMATELRKLGAEVE 368
>gnl|CDD|150914 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
Srh. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srh is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 302
Score = 33.7 bits (78), Expect = 0.11
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 311 FPGFPTDLQAQFMAMMCCAAGISHITETIFENRF 344
+ G PT +Q G+S I +FENR+
Sbjct: 80 YLGVPTPIQFYIGVTSLALVGVSII--LLFENRY 111
>gnl|CDD|184828 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 31.9 bits (73), Expect = 0.30
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 47/243 (19%)
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVI----------KIDGGYVDARVSSKGLRGTSYTF 170
L G ++ RP++ L+ +G VI I GG L+G Y
Sbjct: 413 VLTGDASLSKRPMERVAKPLREMGAVIETGEEGRPPLSIRGGQR--------LKGIHYDL 464
Query: 171 PKVSVGATQVMM--MVASL-SHGDTSIYNAAREPEVVDLAHC---LNSMGAKISGMGSST 224
P + + QV ++A L + G+TS+ EP H L G + G+ T
Sbjct: 465 P---MASAQVKSCLLLAGLYAEGETSV----TEPAPT-RDHTERMLRGFGYPVKVEGN-T 515
Query: 225 ITIQGVTSLSGTRHRILPDRIEAGTYAMAVAMTGG-DVILKMTDSSLLKT-VFKVMRQTG 282
I+++G L+ T + D A + +A ++ G ++ L+ + +T V +++ G
Sbjct: 516 ISVEGGGKLTATDIEVPADISSAAFFLVAASIAEGSELTLEHVGINPTRTGVIDILKLMG 575
Query: 283 VDIDIIDEG---------IRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGIS 333
DI + +E IRVR G +L+ +D+ P + F+A CA G +
Sbjct: 576 ADITLENEREVGGEPVADIRVR--GARLKGIDIPEDQVPLAIDEFPVLFVA-AACAEGRT 632
Query: 334 HIT 336
+T
Sbjct: 633 VLT 635
>gnl|CDD|184016 PRK13381, PRK13381, peptidase T; Provisional.
Length = 404
Score = 31.8 bits (73), Expect = 0.34
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 131 RPVDLFVDSLKSLGV---VIKIDGGYVDARVSSKGL 163
R VDL D++K LG+ VI + GG A +S+KGL
Sbjct: 329 RAVDLAFDAMKELGIEPKVIPMRGGTDGAALSAKGL 364
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase.
Length = 443
Score = 30.9 bits (70), Expect = 0.72
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 11 KLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSY 70
+++GT+ + G+K+ S +++ + L+ T ++N+ D D++ ++ L++ G+ + DS
Sbjct: 11 EISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSEN 70
Query: 71 N 71
N
Sbjct: 71 N 71
>gnl|CDD|118954 pfam10433, MMS1, Mono-functional DNA-alkylating agent methyl
methanesulfonate. MMS1 is a protein that protects
against replication-dependent DNA damage in
Saccharomyces cerevisiae.
Length = 1134
Score = 30.7 bits (69), Expect = 0.77
Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 17/177 (9%)
Query: 41 LENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSK 100
L+ I D+ +KL + V S +Y N ST R + + K
Sbjct: 785 LQVISDIGALKLYLLASDGLDVSENSYITYYSTNTDLIST---RSE-----NKKFLYIDK 836
Query: 101 MRASFWVIGPLLAREGYARISLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSS 160
+ V L + E I L ++ ++F D+ L V ++ ++ ++S+
Sbjct: 837 LNRMLIVNTKLNSVEC---IKLQNDKSLRLDSCNIFDDNDNLLESVKQLGYKNINKQLSN 893
Query: 161 KGLRGTSYTFPKVSVGATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKI 217
+ T+++ + +++++ +L I P + + G
Sbjct: 894 LIIELTNFSS------SYKLVLLYPALGKISNHIITNTLYPLLKKHLDIAINTGDSP 944
>gnl|CDD|181275 PRK08185, PRK08185, hypothetical protein; Provisional.
Length = 283
Score = 30.5 bits (69), Expect = 0.82
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 176 GATQVMMMVASLSHGDTSIYNAAREPEVVDLAHCLN-SMGAKISGMGSSTITIQGVTSLS 234
G T VM+ + L + + N A EVV+LAH + S+ ++ +G++ +I+G
Sbjct: 91 GFTSVMIDGSLLPYEE----NVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEG----- 141
Query: 235 GTRHRILPDRIEAGTYAMAVAMTGGD 260
G I D +A + V+ TG D
Sbjct: 142 GVSEIIYTDPEQAEDF---VSRTGVD 164
>gnl|CDD|183257 PRK11649, PRK11649, putative peptidase; Provisional.
Length = 439
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Query: 343 RFMHVQEL-------VRLGARISLSGQTARVEG 368
R+MH+++L V+ G RI+LSG T R G
Sbjct: 358 RYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTG 390
>gnl|CDD|163259 TIGR03429, arom_pren_DMATS, aromatic prenyltransferase, DMATS type.
Members of this protein family are mostly fungal
enzymes of secondary metabolite production.
Characterized or partially characterized members include
several examples of dimethylallyltryptophan synthase, a
brevianamide F prenyltransferase, LtxC from lyngbyatoxin
biosynthesis, and a probable dimethylallyl tyrosine
synthase.
Length = 406
Score = 29.6 bits (67), Expect = 1.6
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 33/155 (21%)
Query: 234 SGTRHRILPDRIEAGTYAMAVAMTGGDVILKM----------TDSSLLKTVFKVMRQTGV 283
+ LP +A + GG V+LK+ T + VF+ +R+
Sbjct: 147 AALLREKLPKGPLRPQMWLAFDLKGGGVVLKVYFYPRLKAAATGVPSSELVFEAIRRLDP 206
Query: 284 DIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGIS------HITE 337
G+ L +D++ P L+ + +A+ C S
Sbjct: 207 K-------------GDLLPALDLLEEYLASRPATLRPELLAIDCVDPAKSRLKIYLATPS 253
Query: 338 TIFENRFMHVQELVRLGARISLSGQTARVEGVQGL 372
F V+++ LG R++ +E ++ L
Sbjct: 254 VSFA----TVRDVWTLGGRLTDPTTMKGLELLREL 284
>gnl|CDD|185299 PRK15401, PRK15401, alpha-ketoglutarate-dependent dioxygenase AlkB;
Provisional.
Length = 213
Score = 29.4 bits (67), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 227 IQGVTSLSGTRHRILPDRIEAGTYAMAVAMT 257
I+ V + + RH + P G Y M+VAMT
Sbjct: 38 IEAVAAQAPFRHMVTP-----GGYTMSVAMT 63
>gnl|CDD|132306 TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter,
permease protein.
Length = 546
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 168 YTFPKVSVGATQVMMMVASLSHGDTSIYNAAR 199
YTFP +M++V +LS D +Y AAR
Sbjct: 143 YTFPHA------LMILVTALSLADGRLYEAAR 168
>gnl|CDD|180989 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated.
Length = 365
Score = 29.2 bits (66), Expect = 1.9
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 349 ELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLD 408
L R GAR + + E R AP A V I A + E +LD
Sbjct: 294 RLARAGARGAPPPEAVPGEAALLARLAPDARLRRWAEVWEKIGRRARRTEA-----VNLD 348
Query: 409 R 409
R
Sbjct: 349 R 349
>gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional.
Length = 282
Score = 29.1 bits (66), Expect = 2.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 291 GIRVRWNGEKL--RPVDVITAP------FPGFPTD 317
G+R W+G++L R + I AP FP FP D
Sbjct: 53 GVRAYWDGKQLLTRQGNPIAAPAWFTAGFPPFPLD 87
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 28.6 bits (64), Expect = 3.0
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 33 LLTSETLTLENIPDLADVKLLIRILRSHGVEILSDSSYNDQNKSY 77
LL L L ++P L IR L++ G+ I +Y + ++
Sbjct: 231 LLARVHLDLPSLPKL------IRSLQAQGIAIDMAYTYQEAEDAF 269
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate.
Length = 717
Score = 28.3 bits (63), Expect = 4.1
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 258 GGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEKLRPVDVITAPFPGFPTD 317
G ++L + S + T+ +RQTG + + ++ RP V+ +P PG P D
Sbjct: 516 GRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPAD 574
Query: 318 LQAQFMAMMCCAAGI 332
A G+
Sbjct: 575 FDVAGTIDAALARGL 589
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 27.7 bits (61), Expect = 5.4
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 14 GTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSHGVEILSD 67
GT+ + G+K+ S V++ + L T+ N+ D D ++++ L GV++ D
Sbjct: 253 GTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRD 306
>gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 27.9 bits (63), Expect = 5.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 354 GARISLSGQTARVEGVQGLRGAPV 377
GAR LSG+ AR G QG+ AP+
Sbjct: 1249 GAR--LSGEIARRHGNQGMADAPI 1270
>gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in PubMed:98389714, is Ser in other
members of the seed alignment.
Length = 441
Score = 27.5 bits (61), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 262 ILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIR 293
IL +SL+K +M+ GV+I+ DE I+
Sbjct: 341 ILTEPKNSLIKQYKALMKTEGVNIEFSDEAIK 372
>gnl|CDD|150775 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members
of this family of prokaryotic proteins include various
putative virulence factor effector proteins. Their exact
function is, as yet, unknown.
Length = 852
Score = 27.4 bits (61), Expect = 7.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 341 ENRFMHVQELVRLGARISLSGQTARVEGVQGLRGAPVMATDLRASVSL---VIAALAAQ 396
+ ++V L RLG + E + PV +L A+VSL V+AAL A+
Sbjct: 260 ADSIINVDALERLG--------SPADEPIVVR---PVKEGELGAAVSLSLAVLAALTAE 307
>gnl|CDD|179962 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 27.3 bits (62), Expect = 7.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 262 ILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIR 293
IL +SL+K ++ GV ++ D+ IR
Sbjct: 343 ILTEPKASLIKQYQALLATEGVTLEFTDDAIR 374
>gnl|CDD|163479 TIGR03767, P_acnes_RR, metallophosphoesterase, PPA1498 family.
This model describes a small collection of probable
metallophosphoresterases, related to pfam00149 but with
long inserts separating some of the shared motifs such
that the homology is apparent only through multiple
sequence alignment. Members of this protein family, in
general, have a Sec-independent TAT (twin-arginine
translocation) signal sequence, N-terminal to the region
modeled by this alignment. Members include YP_056203.1
from Propionibacterium acnes KPA171202.
Length = 496
Score = 27.1 bits (60), Expect = 8.4
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 334 HITETIFENRFMHVQELVRLGAR----ISLSGQTARVEGVQGLRGAPVMATDLRASVS 387
H+ + R ++ R ++L G A V+ V L+G PV T L VS
Sbjct: 44 HLVDVQSPMRVEYLHPFTGSAFRPQEFLTLHGAVALVQRVNALQGGPVTGTALDFVVS 101
>gnl|CDD|179600 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 27.1 bits (61), Expect = 8.5
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 279 RQTGVDIDIIDE-GIRVRWNGEK--LRPVDVITAPFPGFP 315
R G+ ++ DE G V GE L V T PFP P
Sbjct: 443 RGLGMAVEAWDEDGRPVV--GEVGEL----VCTKPFPSMP 476
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,878,347
Number of extensions: 452770
Number of successful extensions: 1036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 37
Length of query: 430
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 334
Effective length of database: 3,920,105
Effective search space: 1309315070
Effective search space used: 1309315070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)