RPSBLAST alignment of GI: 254780927 and protein with PDBid: 3nvs
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A Length = 450
Score = 259 bits (662), Expect = 1e-69
Identities = 75/438 (17%), Positives = 148/438 (33%), Gaps = 33/438 (7%)
Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
M+ + + ++G + + G+K+ S ++ + L S T L N+ D D++ ++ L
Sbjct: 25 MESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKL 84
Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
GV + + T +L + G
Sbjct: 85 GVNY----RLSADKTTCEVE---GLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDY 137
Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKI--DGGYVDARVSSKGLRGTSYTF-PKVSVGA 177
L G + RP+ VD+L+ G I+ + R+ GL+ + T +S
Sbjct: 138 VLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQF 197
Query: 178 TQVMMMVASLSHGDTSIY---NAAREPEVVDLAHCLNSMGAKISGMGSSTITI-QGVTSL 233
+M A L+ G +I +P + H + G ++ I G + +
Sbjct: 198 LTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYV 257
Query: 234 SGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKT---VFKVMRQTGVDIDIIDE 290
S + + D A + A A+ GG+V + + ++ + + G I+ D+
Sbjct: 258 SPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDD 317
Query: 291 GIRVRWNGEKLRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHV--- 347
V +L VD+ P A +A A + ++ R
Sbjct: 318 --YVIARRGELNAVDLDFNHIPD-----AAMTIATTALFAKGTTAIRNVYNWRVKETDRL 370
Query: 348 ----QELVRLGARISLSGQTARVEGVQGLRGAPVMA-TDLRASVSLVIAALAAQGETEIS 402
EL ++GA + + L A + D R ++ + AL+ I+
Sbjct: 371 AAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSD-TPVTIN 429
Query: 403 RVYHLDRGFECLEKKLSR 420
+ F K ++
Sbjct: 430 DPKCTSKTFPDYFDKFAQ 447