BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (430 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 430

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60
           MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH
Sbjct: 1   MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60

Query: 61  GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120
           GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI
Sbjct: 61  GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120

Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180
           SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV
Sbjct: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180

Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240
           MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI
Sbjct: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240

Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300
           LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK
Sbjct: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300

Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360
           LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS
Sbjct: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360

Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420
           GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR
Sbjct: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420

Query: 421 CGALIQRIKG 430
           CGALIQRIKG
Sbjct: 421 CGALIQRIKG 430


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 26.2 bits (56), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 230 VTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQ 280
           + S      RI  +RIE     +   +  GD I      SLL T+F + R+
Sbjct: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 23.9 bits (50), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 219 GMGSSTITIQGVTSLSGTRHRI 240
           G+G ST+ +Q   SL+  +HRI
Sbjct: 100 GIGKSTLLMQTAASLAYKKHRI 121


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,862
Number of Sequences: 1233
Number of extensions: 10047
Number of successful extensions: 26
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 7
length of query: 430
length of database: 328,796
effective HSP length: 76
effective length of query: 354
effective length of database: 235,088
effective search space: 83221152
effective search space used: 83221152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)