BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (430 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 430 Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/430 (100%), Positives = 430/430 (100%) Query: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH Sbjct: 1 MDRIKIIGGNKLNGTIAISGAKNASLPVMIASLLTSETLTLENIPDLADVKLLIRILRSH 60 Query: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI Sbjct: 61 GVEILSDSSYNDQNKSYSSTMHFRCRHIVDLTGSYDLVSKMRASFWVIGPLLAREGYARI 120 Query: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV Sbjct: 121 SLPGGCAIGTRPVDLFVDSLKSLGVVIKIDGGYVDARVSSKGLRGTSYTFPKVSVGATQV 180 Query: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI Sbjct: 181 MMMVASLSHGDTSIYNAAREPEVVDLAHCLNSMGAKISGMGSSTITIQGVTSLSGTRHRI 240 Query: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK Sbjct: 241 LPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQTGVDIDIIDEGIRVRWNGEK 300 Query: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS Sbjct: 301 LRPVDVITAPFPGFPTDLQAQFMAMMCCAAGISHITETIFENRFMHVQELVRLGARISLS 360 Query: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR Sbjct: 361 GQTARVEGVQGLRGAPVMATDLRASVSLVIAALAAQGETEISRVYHLDRGFECLEKKLSR 420 Query: 421 CGALIQRIKG 430 CGALIQRIKG Sbjct: 421 CGALIQRIKG 430 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 22/51 (43%) Query: 230 VTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQ 280 + S RI +RIE + + GD I SLL T+F + R+ Sbjct: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 219 GMGSSTITIQGVTSLSGTRHRI 240 G+G ST+ +Q SL+ +HRI Sbjct: 100 GIGKSTLLMQTAASLAYKKHRI 121 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,862 Number of Sequences: 1233 Number of extensions: 10047 Number of successful extensions: 26 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 7 length of query: 430 length of database: 328,796 effective HSP length: 76 effective length of query: 354 effective length of database: 235,088 effective search space: 83221152 effective search space used: 83221152 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)