HHsearch alignment for GI: 254780928 and conserved domain: CHL00201
>CHL00201 syh histidine-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=703.02 Aligned_cols=418 Identities=25% Similarity=0.355 Sum_probs=329.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCC-CCCCCCCEEEEECCCCCEEEECC
Q ss_conf 71037998765886689999999999999999859848016520228875202675-54333221689869998899988
Q gi|254780928|r 7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPD-EDRPNKGVFSLQDDDGQWISLRY 85 (496)
Q Consensus 7 ~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~-~~~~~k~~y~f~D~~g~~l~LRp 85 (496)
T Consensus 2 ~~~~~~kG~rD~lp~e~~~~~~i~~~i~~~f~~~Gf~~I~TP~lE~~e~~~~~~g~~~d~i~k~~y~f~D~~g~~l~LRp 81 (424)
T CHL00201 2 AKLQPLRGTKDILPDEIEYWQFIHEKAATLLKLANYQEIRTPIFENTELFDRGIGEETDIVNKEMYRFFDRGNRSITLRP 81 (424)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHEEEECCCCCEEEECC
T ss_conf 89889999987899999999999999999999859925047540419886235787420566653254559998888678
Q ss_pred CCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 883899999995112-0554112331013330258764442111110001210000245788999999999751888777
Q gi|254780928|r 86 DLTAPLARYVAENFD-TIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRND 164 (496)
Q Consensus 86 DlT~~~aR~~~~~~~-~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~lgl~~~~ 164 (496)
T Consensus 82 D~T~piaR~~~~~~~~~~~~P~r~~y~g~vfR~e~pq~GR~REF~Q~gvEiiG~~~~~aDaEvi~l~~~~l~~lgl~--~ 159 (424)
T CHL00201 82 EGTASIVRAFIENRMAYHMRPQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSSDPRADMEVIHLAMTLFNELPVH--R 159 (424)
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCC--C
T ss_conf 77099999999747655799878998754780589878864210414620006898287899999999999865965--2
Q ss_pred CEEECCCCHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 113036605589999-9832560356433455533322001289678998621016500355530489997789988874
Q gi|254780928|r 165 YHIGINNRKILDGIL-EKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSF 243 (496)
Q Consensus 165 ~~I~in~~~il~~il-~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (496)
T Consensus 160 ~~i~in~~g~~~~~~~~~~~l------~~~--l~~~~~~l~~~~~~~l---------------------~~~~~~~l~~~ 210 (424)
T CHL00201 160 LVLDINSIGKMEDRALYRDKL------TEY--LSQYNQDLDEDSQNRL---------------------SSNPLRILDSK 210 (424)
T ss_pred EEHHCCCCCCHHHHHHHHHHH------HHH--HHHHHHHHCHHHHHHH---------------------HHHHHHHHHHH
T ss_conf 010003325599888899999------999--9998754377877532---------------------11489998730
Q ss_pred HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 04785688998998603573258889999999999875088844300110100122123412489985466677676663
Q gi|254780928|r 244 LSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPV 323 (496)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRgLdYYTG~vFE~~~~~~~~~~~~~~~ 323 (496)
T Consensus 211 -~-~~~~~~l~~~~~l~~-~~~~~~~~~l~~l~~~l~~~~v~---~~~D~slvRGLdYYTG~VFE~~~~--------~~~ 276 (424)
T CHL00201 211 -N-GATQEILDMAPLLSD-FLSLESEEHFADVCEYLANLNIP---YKINPKLVRGLDYYNDTAFEIKTL--------GSD 276 (424)
T ss_pred -C-CHHHHHHHHCHHHHH-HHCHHHHHHHHHHHHHHHHCCCC---CCCCHHHHCCCCCCCCCEEEEEEC--------CCC
T ss_conf -6-047999864432010-20488899999999999843876---452877715767645736999967--------888
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf 10110032323552111234567742133110168999997368776655577148998269768999999999999987
Q gi|254780928|r 324 VFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTA 403 (496)
Q Consensus 324 ~~~aI~~GGRYD~L~~~f~~~~~pavGfaigverl~~~l~~~~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~Lr~~ 403 (496)
T Consensus 277 ~~~si~gGGRYD~Lv~~fgg~~~PavGfaiGieRl~~~l~~~~~~~---~~~~~~~v~~~--~~~~~~~~~~ia~~LR~~ 351 (424)
T CHL00201 277 AQDTVCGGGRYDSLVEQLGGPKTPAVGWAIGIERLLLIAKDNILLP---KPSIDFYIATK--GNVAIKIAFSIQRFLHNQ 351 (424)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCCC---CCCCCEEEEEC--CHHHHHHHHHHHHHHHHC
T ss_conf 6234237877077899729999985778843999999997337777---77885899977--849999999999999988
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHHHHH
Q ss_conf 98399971899998899999987799899998872874881899787888364331120144320233510307999999
Q gi|254780928|r 404 GIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVS 483 (496)
Q Consensus 404 Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~ 483 (496)
T Consensus 352 gi~~e~~~~-~~~l~kql~~A~k~~~~~~iiiG~~E~~~~~v~lK~l~sg~Q~~~~~---------------~~l~~~i~ 415 (424)
T CHL00201 352 GLKSELDLS-SSNFSKQIKQAAKKRALACIILGDNEIARGAITIKWLDSQIQENSQY---------------LNFKDFIS 415 (424)
T ss_pred CCEEEEEEC-CCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCCCCEEC---------------CCHHHHHH
T ss_conf 993999708-99999999999987999999985158868968998689988752302---------------47999999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780928|r 484 TVKKILQ 490 (496)
Q Consensus 484 ~~~~~l~ 490 (496)
T Consensus 416 ~lkk~~~ 422 (424)
T CHL00201 416 YLKKKIL 422 (424)
T ss_pred HHHHHHH
T ss_conf 9999872