HHsearch alignment for GI: 254780928 and conserved domain: CHL00201

>CHL00201 syh histidine-tRNA synthetase; Provisional.
Probab=100.00  E-value=0  Score=703.02  Aligned_cols=418  Identities=25%  Similarity=0.355  Sum_probs=329.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCC-CCCCCCCEEEEECCCCCEEEECC
Q ss_conf             71037998765886689999999999999999859848016520228875202675-54333221689869998899988
Q gi|254780928|r    7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPD-EDRPNKGVFSLQDDDGQWISLRY   85 (496)
Q Consensus         7 ~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~-~~~~~k~~y~f~D~~g~~l~LRp   85 (496)
T Consensus         2 ~~~~~~kG~rD~lp~e~~~~~~i~~~i~~~f~~~Gf~~I~TP~lE~~e~~~~~~g~~~d~i~k~~y~f~D~~g~~l~LRp   81 (424)
T CHL00201          2 AKLQPLRGTKDILPDEIEYWQFIHEKAATLLKLANYQEIRTPIFENTELFDRGIGEETDIVNKEMYRFFDRGNRSITLRP   81 (424)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHEEEECCCCCEEEECC
T ss_conf             89889999987899999999999999999999859925047540419886235787420566653254559998888678


Q ss_pred             CCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             883899999995112-0554112331013330258764442111110001210000245788999999999751888777
Q gi|254780928|r   86 DLTAPLARYVAENFD-TIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRND  164 (496)
Q Consensus        86 DlT~~~aR~~~~~~~-~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~lgl~~~~  164 (496)
T Consensus        82 D~T~piaR~~~~~~~~~~~~P~r~~y~g~vfR~e~pq~GR~REF~Q~gvEiiG~~~~~aDaEvi~l~~~~l~~lgl~--~  159 (424)
T CHL00201         82 EGTASIVRAFIENRMAYHMRPQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSSDPRADMEVIHLAMTLFNELPVH--R  159 (424)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCC--C
T ss_conf             77099999999747655799878998754780589878864210414620006898287899999999999865965--2


Q ss_pred             CEEECCCCHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             113036605589999-9832560356433455533322001289678998621016500355530489997789988874
Q gi|254780928|r  165 YHIGINNRKILDGIL-EKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSF  243 (496)
Q Consensus       165 ~~I~in~~~il~~il-~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (496)
T Consensus       160 ~~i~in~~g~~~~~~~~~~~l------~~~--l~~~~~~l~~~~~~~l---------------------~~~~~~~l~~~  210 (424)
T CHL00201        160 LVLDINSIGKMEDRALYRDKL------TEY--LSQYNQDLDEDSQNRL---------------------SSNPLRILDSK  210 (424)
T ss_pred             EEHHCCCCCCHHHHHHHHHHH------HHH--HHHHHHHHCHHHHHHH---------------------HHHHHHHHHHH
T ss_conf             010003325599888899999------999--9998754377877532---------------------11489998730


Q ss_pred             HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             04785688998998603573258889999999999875088844300110100122123412489985466677676663
Q gi|254780928|r  244 LSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPV  323 (496)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRgLdYYTG~vFE~~~~~~~~~~~~~~~  323 (496)
T Consensus       211 -~-~~~~~~l~~~~~l~~-~~~~~~~~~l~~l~~~l~~~~v~---~~~D~slvRGLdYYTG~VFE~~~~--------~~~  276 (424)
T CHL00201        211 -N-GATQEILDMAPLLSD-FLSLESEEHFADVCEYLANLNIP---YKINPKLVRGLDYYNDTAFEIKTL--------GSD  276 (424)
T ss_pred             -C-CHHHHHHHHCHHHHH-HHCHHHHHHHHHHHHHHHHCCCC---CCCCHHHHCCCCCCCCCEEEEEEC--------CCC
T ss_conf             -6-047999864432010-20488899999999999843876---452877715767645736999967--------888


Q ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf             10110032323552111234567742133110168999997368776655577148998269768999999999999987
Q gi|254780928|r  324 VFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTA  403 (496)
Q Consensus       324 ~~~aI~~GGRYD~L~~~f~~~~~pavGfaigverl~~~l~~~~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~Lr~~  403 (496)
T Consensus       277 ~~~si~gGGRYD~Lv~~fgg~~~PavGfaiGieRl~~~l~~~~~~~---~~~~~~~v~~~--~~~~~~~~~~ia~~LR~~  351 (424)
T CHL00201        277 AQDTVCGGGRYDSLVEQLGGPKTPAVGWAIGIERLLLIAKDNILLP---KPSIDFYIATK--GNVAIKIAFSIQRFLHNQ  351 (424)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCCC---CCCCCEEEEEC--CHHHHHHHHHHHHHHHHC
T ss_conf             6234237877077899729999985778843999999997337777---77885899977--849999999999999988


Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHHHHH
Q ss_conf             98399971899998899999987799899998872874881899787888364331120144320233510307999999
Q gi|254780928|r  404 GIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVS  483 (496)
Q Consensus       404 Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~  483 (496)
T Consensus       352 gi~~e~~~~-~~~l~kql~~A~k~~~~~~iiiG~~E~~~~~v~lK~l~sg~Q~~~~~---------------~~l~~~i~  415 (424)
T CHL00201        352 GLKSELDLS-SSNFSKQIKQAAKKRALACIILGDNEIARGAITIKWLDSQIQENSQY---------------LNFKDFIS  415 (424)
T ss_pred             CCEEEEEEC-CCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCCCCEEC---------------CCHHHHHH
T ss_conf             993999708-99999999999987999999985158868968998689988752302---------------47999999


Q ss_pred             HHHHHHH
Q ss_conf             9999998
Q gi|254780928|r  484 TVKKILQ  490 (496)
Q Consensus       484 ~~~~~l~  490 (496)
T Consensus       416 ~lkk~~~  422 (424)
T CHL00201        416 YLKKKIL  422 (424)
T ss_pred             HHHHHHH
T ss_conf             9999872