HHsearch alignment for GI: 254780928 and conserved domain: COG0172
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=98.54 E-value=8.2e-07 Score=63.41 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=105.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHH
Q ss_conf 99876588668999999999999999985984801652022887520267554333221689869998899988883899
Q gi|254780928|r 12 PRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPL 91 (496)
Q Consensus 12 P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~~ 91 (496)
T Consensus 163 Gsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtg-qlpkf~e~~y~v~~~---~~~LipTaEvpl 238 (429)
T COG0172 163 GSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTG-QLPKFEEDLYKVEDP---DLYLIPTAEVPL 238 (429)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCEEECHHHHHCCC-CCCCCCCCCEEECCC---CEEEEECCHHHH
T ss_conf 8743898077899999999999999987696586576060598862237-898880121584589---879970202156
Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHCCCCC-----CCCCCCCCCCCCHHHHHC---CCHHHHH-HHHHHHHHHHHHCCCC
Q ss_conf 9999951120-5541123310133302587-----644421111100012100---0024578-8999999999751888
Q gi|254780928|r 92 ARYVAENFDT-IVFPCRTYRIGPVFRNEKH-----GPGRFRQFIQCDVDNVGS---SAETADA-EMCMMMADTLEAVGIK 161 (496)
Q Consensus 92 aR~~~~~~~~-~~~p~k~yy~g~vfR~e~p-----~~Gr~REf~Q~g~eiiG~---~~~~~Da-Eii~l~~~~l~~lgl~ 161 (496)
T Consensus 239 ~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP 318 (429)
T COG0172 239 TNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP 318 (429)
T ss_pred HHHHCCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78651620152127802678772542145656643553014664355899997070116999999999999999970898
Q ss_pred C
Q ss_conf 7
Q gi|254780928|r 162 R 162 (496)
Q Consensus 162 ~ 162 (496)
T Consensus 319 y 319 (429)
T COG0172 319 Y 319 (429)
T ss_pred C
T ss_conf 3