HHsearch alignment for GI: 254780928 and conserved domain: COG0441

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.95  E-value=6.1e-26  Score=187.62  Aligned_cols=368  Identities=19%  Similarity=0.275  Sum_probs=236.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHH
Q ss_conf             37998765886689999999999999999859848016520228875202675543332216898699988999888838
Q gi|254780928|r   10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTA   89 (496)
Q Consensus        10 ~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~   89 (496)
T Consensus       207 ~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~-~~SGH~~~y~e~mf~~~~-~~~~~~lKpmNCp  284 (589)
T COG0441         207 EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELW-ELSGHWDNYKEDMFLTES-DDREYALKPMNCP  284 (589)
T ss_pred             CCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEECCCC-HHCCCHHHCCCCCEEECC-CCHHHEEEECCCH
T ss_conf             45885069878846699999999998987558527128736300001-011204551366066213-7723306410787


Q ss_pred             HHHHHHHHHHH-HCCCCHHHHHHHHHHCCCCCC--CC--CCCCCCCCCHHHHHCCCHHH-HH-HHHHHHHHHHHHCCCCC
Q ss_conf             99999995112-055411233101333025876--44--42111110001210000245-78-89999999997518887
Q gi|254780928|r   90 PLARYVAENFD-TIVFPCRTYRIGPVFRNEKHG--PG--RFRQFIQCDVDNVGSSAETA-DA-EMCMMMADTLEAVGIKR  162 (496)
Q Consensus        90 ~~aR~~~~~~~-~~~~p~k~yy~g~vfR~e~p~--~G--r~REf~Q~g~eiiG~~~~~~-Da-Eii~l~~~~l~~lgl~~  162 (496)
T Consensus       285 gh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdD~Hifc~~dQi~~E~~~~~~~i~~v~~~fg~~-  363 (589)
T COG0441         285 GHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFT-  363 (589)
T ss_pred             HHHHHHHCCCCCEECCCHHHHHCCEEECCCCCCHHHCCCCCCCEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf             6899985378611004404331442211567642222400113224562014046788999999999999999846975-


Q ss_pred             CCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             77113036605589999983256035643345553332200128967899862101650035553048999778998887
Q gi|254780928|r  163 NDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVS  242 (496)
Q Consensus       163 ~~~~I~in~~~il~~il~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (496)
T Consensus       364 -~y~~~ls~r~------k~ig~d~~W~~a--~--------------~~l~~al~~~~~~----~~~~~G--------~ga  408 (589)
T COG0441         364 -DYEVKLSTRP------KFIGSDEMWDKA--E--------------AALREALKEIGVE----YVEEPG--------EGA  408 (589)
T ss_pred             -EEEEEEECCC------CCCCCHHHHHHH--H--------------HHHHHHHHHHCCE----EEECCC--------CEE
T ss_conf             -3799996477------646873556778--8--------------9999888760860----364687--------357


Q ss_pred             HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             40478568899899860357325888999999999987508884430011010012212341248998546667767666
Q gi|254780928|r  243 FLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKP  322 (496)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRgLdYYTG~vFE~~~~~~~~~~~~~~  322 (496)
T Consensus       409 FyGPKid~~-------------v~Dalgr---------~~--q~~TIQlDf~lpe--------RF~l~Yv~-~d~~~~~P  455 (589)
T COG0441         409 FYGPKIDFQ-------------VKDALGR---------EW--QLGTIQLDFNLPE--------RFDLEYVD-EDGEKKRP  455 (589)
T ss_pred             EECCCCCEE-------------EEECCCC---------CE--ECCEEEEECCCHH--------HCEEEEEC-CCCCCCCC
T ss_conf             977664248-------------8735686---------10--0561787037724--------21479985-77875387


Q ss_pred             CCE-EEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHH-CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             310-110032323552111234567742133110168999997-368776655577148998269768999999999999
Q gi|254780928|r  323 VVF-GSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKS-LESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQML  400 (496)
Q Consensus       323 ~~~-~aI~~GGRYD~L~~~f~~~~~pavGfaigverl~~~l~~-~~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~L  400 (496)
T Consensus       456 vmiHr---------------------ai--~GSiERfi~iLiE~~~G~~P~--WLaPvQv~VipV~~~~~~ya~~v~~~L  510 (589)
T COG0441         456 VIIHR---------------------AI--LGSIERFIGILLEHYAGALPT--WLAPVQVRVIPVADEHLDYAKEVAEKL  510 (589)
T ss_pred             EEEEE---------------------CC--CHHHHHHHHHHHHHCCCCCCC--CCCCCEEEEEEECHHHHHHHHHHHHHH
T ss_conf             89992---------------------46--414899999999864698876--578517999993737778999999999


Q ss_pred             HHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHH
Q ss_conf             98798399971899998899999987799899998872874881899787888364331120144320233510307999
Q gi|254780928|r  401 RTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE  480 (496)
Q Consensus       401 r~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~  480 (496)
T Consensus       511 ~~~giRvdvD~~-~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~------------------~~~~l~e  571 (589)
T COG0441         511 RKAGIRVDIDDR-NEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQ------------------KSMTLEE  571 (589)
T ss_pred             HHCCCEEEECCC-CCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCC------------------CCCCHHH
T ss_conf             972970241256-660689999877628787999731432038717997267755------------------6346999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999864
Q gi|254780928|r  481 LVSTVKKILQEN  492 (496)
Q Consensus       481 l~~~~~~~l~~~  492 (496)
T Consensus       572 ~i~~ik~e~~~~  583 (589)
T COG0441         572 LVEELKKEIEGR  583 (589)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999876445