HHsearch alignment for GI: 254780928 and conserved domain: COG0441
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.95 E-value=6.1e-26 Score=187.62 Aligned_cols=368 Identities=19% Similarity=0.275 Sum_probs=236.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHH
Q ss_conf 37998765886689999999999999999859848016520228875202675543332216898699988999888838
Q gi|254780928|r 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTA 89 (496)
Q Consensus 10 ~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~ 89 (496)
T Consensus 207 ~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~-~~SGH~~~y~e~mf~~~~-~~~~~~lKpmNCp 284 (589)
T COG0441 207 EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELW-ELSGHWDNYKEDMFLTES-DDREYALKPMNCP 284 (589)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEECCCC-HHCCCHHHCCCCCEEECC-CCHHHEEEECCCH
T ss_conf 45885069878846699999999998987558527128736300001-011204551366066213-7723306410787
Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHHHCCCCCC--CC--CCCCCCCCCHHHHHCCCHHH-HH-HHHHHHHHHHHHCCCCC
Q ss_conf 99999995112-055411233101333025876--44--42111110001210000245-78-89999999997518887
Q gi|254780928|r 90 PLARYVAENFD-TIVFPCRTYRIGPVFRNEKHG--PG--RFRQFIQCDVDNVGSSAETA-DA-EMCMMMADTLEAVGIKR 162 (496)
Q Consensus 90 ~~aR~~~~~~~-~~~~p~k~yy~g~vfR~e~p~--~G--r~REf~Q~g~eiiG~~~~~~-Da-Eii~l~~~~l~~lgl~~ 162 (496)
T Consensus 285 gh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdD~Hifc~~dQi~~E~~~~~~~i~~v~~~fg~~- 363 (589)
T COG0441 285 GHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFT- 363 (589)
T ss_pred HHHHHHHCCCCCEECCCHHHHHCCEEECCCCCCHHHCCCCCCCEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 6899985378611004404331442211567642222400113224562014046788999999999999999846975-
Q ss_pred CCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 77113036605589999983256035643345553332200128967899862101650035553048999778998887
Q gi|254780928|r 163 NDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVS 242 (496)
Q Consensus 163 ~~~~I~in~~~il~~il~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (496)
T Consensus 364 -~y~~~ls~r~------k~ig~d~~W~~a--~--------------~~l~~al~~~~~~----~~~~~G--------~ga 408 (589)
T COG0441 364 -DYEVKLSTRP------KFIGSDEMWDKA--E--------------AALREALKEIGVE----YVEEPG--------EGA 408 (589)
T ss_pred -EEEEEEECCC------CCCCCHHHHHHH--H--------------HHHHHHHHHHCCE----EEECCC--------CEE
T ss_conf -3799996477------646873556778--8--------------9999888760860----364687--------357
Q ss_pred HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 40478568899899860357325888999999999987508884430011010012212341248998546667767666
Q gi|254780928|r 243 FLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKP 322 (496)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRgLdYYTG~vFE~~~~~~~~~~~~~~ 322 (496)
T Consensus 409 FyGPKid~~-------------v~Dalgr---------~~--q~~TIQlDf~lpe--------RF~l~Yv~-~d~~~~~P 455 (589)
T COG0441 409 FYGPKIDFQ-------------VKDALGR---------EW--QLGTIQLDFNLPE--------RFDLEYVD-EDGEKKRP 455 (589)
T ss_pred EECCCCCEE-------------EEECCCC---------CE--ECCEEEEECCCHH--------HCEEEEEC-CCCCCCCC
T ss_conf 977664248-------------8735686---------10--0561787037724--------21479985-77875387
Q ss_pred CCE-EEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHH-CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 310-110032323552111234567742133110168999997-368776655577148998269768999999999999
Q gi|254780928|r 323 VVF-GSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKS-LESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQML 400 (496)
Q Consensus 323 ~~~-~aI~~GGRYD~L~~~f~~~~~pavGfaigverl~~~l~~-~~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~L 400 (496)
T Consensus 456 vmiHr---------------------ai--~GSiERfi~iLiE~~~G~~P~--WLaPvQv~VipV~~~~~~ya~~v~~~L 510 (589)
T COG0441 456 VIIHR---------------------AI--LGSIERFIGILLEHYAGALPT--WLAPVQVRVIPVADEHLDYAKEVAEKL 510 (589)
T ss_pred EEEEE---------------------CC--CHHHHHHHHHHHHHCCCCCCC--CCCCCEEEEEEECHHHHHHHHHHHHHH
T ss_conf 89992---------------------46--414899999999864698876--578517999993737778999999999
Q ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHH
Q ss_conf 98798399971899998899999987799899998872874881899787888364331120144320233510307999
Q gi|254780928|r 401 RTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE 480 (496)
Q Consensus 401 r~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~ 480 (496)
T Consensus 511 ~~~giRvdvD~~-~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~------------------~~~~l~e 571 (589)
T COG0441 511 RKAGIRVDIDDR-NEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQ------------------KSMTLEE 571 (589)
T ss_pred HHCCCEEEECCC-CCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCC------------------CCCCHHH
T ss_conf 972970241256-660689999877628787999731432038717997267755------------------6346999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999864
Q gi|254780928|r 481 LVSTVKKILQEN 492 (496)
Q Consensus 481 l~~~~~~~l~~~ 492 (496)
T Consensus 572 ~i~~ik~e~~~~ 583 (589)
T COG0441 572 LVEELKKEIEGR 583 (589)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999876445