HHsearch alignment for GI: 254780928 and conserved domain: COG0442
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.89 E-value=3.4e-22 Score=163.29 Aligned_cols=409 Identities=18% Similarity=0.193 Sum_probs=222.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECC
Q ss_conf 87103799876588668999999999999999985984801652022887520267554333221689869998899988
Q gi|254780928|r 6 KLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRY 85 (496)
Q Consensus 6 ~~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRp 85 (496)
T Consensus 30 g~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p-~eLwkEs~r~~~f~~El~~v~drg~~~l~L~P 108 (500)
T COG0442 30 GMIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIP-AELWKESGRWEGFGPELFRVKDRGDRPLALRP 108 (500)
T ss_pred CCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECHHCCH-HHHHHHHCHHHCCCHHHEEEECCCCCEEEECC
T ss_conf 86020257169977658999999999999999860850883110587-89998748563036444899716996343578
Q ss_pred CC---HHHHHH-HHHHHHHHCCCCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCHHHHH---HHHHHHHHHH
Q ss_conf 88---389999-9995112055411233101333025-87644--4211111000121000024578---8999999999
Q gi|254780928|r 86 DL---TAPLAR-YVAENFDTIVFPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAETADA---EMCMMMADTL 155 (496)
Q Consensus 86 Dl---T~~~aR-~~~~~~~~~~~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~~~Da---Eii~l~~~~l 155 (496)
T Consensus 109 TsEe~it~~~~~~i~SY---kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if 185 (500)
T COG0442 109 TSEEVITDMFRKWIRSY---KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIF 185 (500)
T ss_pred CCHHHHHHHHHHHHHHH---HHCCCCEEEEEEEEECCCCCCCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 86899999999986556---518812101345884334688773000203301112102898999999999999999999
Q ss_pred HHCCCCCCCCEEECCCCHHHH--------HHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCCHHHHH-HHHHHCCCCHHHH
Q ss_conf 751888777113036605589--------9999832560356433455533322001-28967899-8621016500355
Q gi|254780928|r 156 EAVGIKRNDYHIGINNRKILD--------GILEKIGLHGDDKLNERLIVLRAIDKLD-KFGLQGVK-LLLGEGRTDNSGD 225 (496)
Q Consensus 156 ~~lgl~~~~~~I~in~~~il~--------~il~~lgi~~~~~~~~~~~~~~~idkl~-k~~~~~~~-~~l~~~~~~~~~~ 225 (496)
T Consensus 186 ~~i~l~---~~~~~ad~g~~Gg~~S~eF~~l~pd~---ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~-------v 252 (500)
T COG0442 186 LRLPLI---FGPVPADEGFIGGSYSHEFEALMPDG---GEDQIATSHHYGANFEKAFIDIKFEDEEEGELEY-------V 252 (500)
T ss_pred HHCCCE---EEEECCCCCCCCCCCCEEEEEECCCC---CCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCEE-------E
T ss_conf 858953---88625667788876536999985689---8547998062666687744677755666554147-------5
Q ss_pred HHCCCCCCHHHHHHHHHHHCCC-----CHHHHHHH-----HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-HH
Q ss_conf 5304899977899888740478-----56889989-----9860357325888999999999987508884430011-01
Q gi|254780928|r 226 FTKGANLTSEQIDIMVSFLSID-----LEKSMHEL-----YELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKIS-ST 294 (496)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l-----~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~D-l~ 294 (496)
T Consensus 253 ~t~s~~~s~r~~~~~i-~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~---~~~~~D~~~ 328 (500)
T COG0442 253 HTTSYGISTRIIGAAI-LIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLG---IRVEGDDRS 328 (500)
T ss_pred CCCCEEEEEEEEEEEE-EEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC---EEEECCCCC
T ss_conf 1462688740015899-971488776487500453489975133674101334304544456654302---588424568
Q ss_pred -HCCCCCCC------CCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCC-CCCCC---CCC--CCCCEEEECCHHHHHH
Q ss_conf -00122123------41248998546667767666310110032323552-11123---456--7742133110168999
Q gi|254780928|r 295 -IVRGLEYY------TGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGL-VSRFK---GQN--VPATGFSIGISRLIVA 361 (496)
Q Consensus 295 -lvRgLdYY------TG~vFE~~~~~~~~~~~~~~~~~~aI~~GGRYD~L-~~~f~---~~~--~pavGfaigverl~~~ 361 (496)
T Consensus 329 ~~~~G~kl~~~e~ieVghif~l---------------------G~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a 387 (500)
T COG0442 329 PDGPGFKLNIWEGIEVGHIFEL---------------------GTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAA 387 (500)
T ss_pred CCCCCCEEEEEECCCCCEEEEE---------------------CCHHHHHCEEEEEECCCCCCCEEEECHHHHHHHHHHH
T ss_conf 9999721102102445779998---------------------7412541804999248871441787000003459999
Q ss_pred HHHCCC--CCCCCC---CCCEEEEEEECC-CHHHHHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 997368--776655---577148998269-7689999999999999879-839997189999889999998779989999
Q gi|254780928|r 362 LKSLES--STNNIK---EMGPVLITTMDH-DSDSLSKYQMYTQMLRTAG-IRAEMFLGSSKNFGNQLKYADRRNCPLAII 434 (496)
Q Consensus 362 l~~~~~--~~~~~~---~~~~v~V~~~~~-~~~~~~~~~~ia~~Lr~~G-i~~e~~~~~~~sl~~~~~~A~~~g~~~vii 434 (496)
T Consensus 388 ~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr-~er~g~k~~~a~liGiP~~~~ 466 (500)
T COG0442 388 LLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDR-DERPGVKFADADLIGIPLRIV 466 (500)
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-CCCCCCCCCCCEEECCCCEEE
T ss_conf 9997362226716001475000799748635999987565899877578621445422-014675014874710440331
Q ss_pred ECHHHHHCCCEEEEECCCCCEEEE
Q ss_conf 887287488189978788836433
Q gi|254780928|r 435 QGTGERSRGMLQIKDLAKGKELSR 458 (496)
Q Consensus 435 ig~~e~~~~~v~vK~l~~g~q~~~ 458 (496)
T Consensus 467 ~g~~-~~~g~~e~k~r~~ge~~~~ 489 (500)
T COG0442 467 VGKR-LAEGEVEVKCRKCGEKEAV 489 (500)
T ss_pred ECCC-CCCCCEEEEECCCCCHHHC
T ss_conf 0334-4688236886477861015