HHsearch alignment for GI: 254780928 and conserved domain: COG0442

>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.89  E-value=3.4e-22  Score=163.29  Aligned_cols=409  Identities=18%  Similarity=0.193  Sum_probs=222.7

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECC
Q ss_conf             87103799876588668999999999999999985984801652022887520267554333221689869998899988
Q gi|254780928|r    6 KLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRY   85 (496)
Q Consensus         6 ~~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRp   85 (496)
T Consensus        30 g~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p-~eLwkEs~r~~~f~~El~~v~drg~~~l~L~P  108 (500)
T COG0442          30 GMIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIP-AELWKESGRWEGFGPELFRVKDRGDRPLALRP  108 (500)
T ss_pred             CCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECHHCCH-HHHHHHHCHHHCCCHHHEEEECCCCCEEEECC
T ss_conf             86020257169977658999999999999999860850883110587-89998748563036444899716996343578


Q ss_pred             CC---HHHHHH-HHHHHHHHCCCCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCHHHHH---HHHHHHHHHH
Q ss_conf             88---389999-9995112055411233101333025-87644--4211111000121000024578---8999999999
Q gi|254780928|r   86 DL---TAPLAR-YVAENFDTIVFPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAETADA---EMCMMMADTL  155 (496)
Q Consensus        86 Dl---T~~~aR-~~~~~~~~~~~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~~~Da---Eii~l~~~~l  155 (496)
T Consensus       109 TsEe~it~~~~~~i~SY---kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if  185 (500)
T COG0442         109 TSEEVITDMFRKWIRSY---KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIF  185 (500)
T ss_pred             CCHHHHHHHHHHHHHHH---HHCCCCEEEEEEEEECCCCCCCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             86899999999986556---518812101345884334688773000203301112102898999999999999999999


Q ss_pred             HHCCCCCCCCEEECCCCHHHH--------HHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCCHHHHH-HHHHHCCCCHHHH
Q ss_conf             751888777113036605589--------9999832560356433455533322001-28967899-8621016500355
Q gi|254780928|r  156 EAVGIKRNDYHIGINNRKILD--------GILEKIGLHGDDKLNERLIVLRAIDKLD-KFGLQGVK-LLLGEGRTDNSGD  225 (496)
Q Consensus       156 ~~lgl~~~~~~I~in~~~il~--------~il~~lgi~~~~~~~~~~~~~~~idkl~-k~~~~~~~-~~l~~~~~~~~~~  225 (496)
T Consensus       186 ~~i~l~---~~~~~ad~g~~Gg~~S~eF~~l~pd~---ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~-------v  252 (500)
T COG0442         186 LRLPLI---FGPVPADEGFIGGSYSHEFEALMPDG---GEDQIATSHHYGANFEKAFIDIKFEDEEEGELEY-------V  252 (500)
T ss_pred             HHCCCE---EEEECCCCCCCCCCCCEEEEEECCCC---CCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCEE-------E
T ss_conf             858953---88625667788876536999985689---8547998062666687744677755666554147-------5


Q ss_pred             HHCCCCCCHHHHHHHHHHHCCC-----CHHHHHHH-----HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-HH
Q ss_conf             5304899977899888740478-----56889989-----9860357325888999999999987508884430011-01
Q gi|254780928|r  226 FTKGANLTSEQIDIMVSFLSID-----LEKSMHEL-----YELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKIS-ST  294 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l-----~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~D-l~  294 (496)
T Consensus       253 ~t~s~~~s~r~~~~~i-~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~---~~~~~D~~~  328 (500)
T COG0442         253 HTTSYGISTRIIGAAI-LIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLG---IRVEGDDRS  328 (500)
T ss_pred             CCCCEEEEEEEEEEEE-EEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC---EEEECCCCC
T ss_conf             1462688740015899-971488776487500453489975133674101334304544456654302---588424568


Q ss_pred             -HCCCCCCC------CCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCC-CCCCC---CCC--CCCCEEEECCHHHHHH
Q ss_conf             -00122123------41248998546667767666310110032323552-11123---456--7742133110168999
Q gi|254780928|r  295 -IVRGLEYY------TGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGL-VSRFK---GQN--VPATGFSIGISRLIVA  361 (496)
Q Consensus       295 -lvRgLdYY------TG~vFE~~~~~~~~~~~~~~~~~~aI~~GGRYD~L-~~~f~---~~~--~pavGfaigverl~~~  361 (496)
T Consensus       329 ~~~~G~kl~~~e~ieVghif~l---------------------G~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a  387 (500)
T COG0442         329 PDGPGFKLNIWEGIEVGHIFEL---------------------GTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAA  387 (500)
T ss_pred             CCCCCCEEEEEECCCCCEEEEE---------------------CCHHHHHCEEEEEECCCCCCCEEEECHHHHHHHHHHH
T ss_conf             9999721102102445779998---------------------7412541804999248871441787000003459999


Q ss_pred             HHHCCC--CCCCCC---CCCEEEEEEECC-CHHHHHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             997368--776655---577148998269-7689999999999999879-839997189999889999998779989999
Q gi|254780928|r  362 LKSLES--STNNIK---EMGPVLITTMDH-DSDSLSKYQMYTQMLRTAG-IRAEMFLGSSKNFGNQLKYADRRNCPLAII  434 (496)
Q Consensus       362 l~~~~~--~~~~~~---~~~~v~V~~~~~-~~~~~~~~~~ia~~Lr~~G-i~~e~~~~~~~sl~~~~~~A~~~g~~~vii  434 (496)
T Consensus       388 ~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr-~er~g~k~~~a~liGiP~~~~  466 (500)
T COG0442         388 LLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDR-DERPGVKFADADLIGIPLRIV  466 (500)
T ss_pred             HHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-CCCCCCCCCCCEEECCCCEEE
T ss_conf             9997362226716001475000799748635999987565899877578621445422-014675014874710440331


Q ss_pred             ECHHHHHCCCEEEEECCCCCEEEE
Q ss_conf             887287488189978788836433
Q gi|254780928|r  435 QGTGERSRGMLQIKDLAKGKELSR  458 (496)
Q Consensus       435 ig~~e~~~~~v~vK~l~~g~q~~~  458 (496)
T Consensus       467 ~g~~-~~~g~~e~k~r~~ge~~~~  489 (500)
T COG0442         467 VGKR-LAEGEVEVKCRKCGEKEAV  489 (500)
T ss_pred             ECCC-CCCCCEEEEECCCCCHHHC
T ss_conf             0334-4688236886477861015