HHsearch alignment for GI: 254780928 and conserved domain: COG0442
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=96.16 E-value=0.034 Score=33.46 Aligned_cols=90 Identities=17% Similarity=0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHH
Q ss_conf 99999999999998798399971899998899999987799899998872874881899787888364331120144320
Q gi|254780928|r 389 SLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWRE 468 (496)
Q Consensus 389 ~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~ 468 (496)
T Consensus 304 ~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~----------- 372 (500)
T COG0442 304 VVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPK----------- 372 (500)
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHCEEEEEECCCCCCCE-----------
T ss_conf 430454445665430258842456899997211021024457799987412541804999248871441-----------
Q ss_pred CCCCCEEECHHHHHHH-HHHHHHHHHH
Q ss_conf 2335103079999999-9999986420
Q gi|254780928|r 469 ARVAQITIPISELVST-VKKILQENKE 494 (496)
Q Consensus 469 ~~~~q~~v~~~~l~~~-~~~~l~~~~~ 494 (496)
T Consensus 373 -----~mg~ygigvsr~v~a~ieq~~d 394 (500)
T COG0442 373 -----TMGCYGIGVSRLVAALLEQIHD 394 (500)
T ss_pred -----EEECHHHHHHHHHHHHHHHHCC
T ss_conf -----7870000034599999997362