HHsearch alignment for GI: 254780928 and conserved domain: COG1190
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=98.24 E-value=2e-05 Score=54.41 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999985984801652022887520267554333221689869998899988883899999995112055
Q gi|254780928|r 24 RIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIV 103 (496)
Q Consensus 24 ~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~~aR~~~~~~~~~~ 103 (496)
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~-----GGA~ArPF---~ThhNald~dlyLRIApELyLKRliVGG~---- 248 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPMLQPIP-----GGAAARPF---ITHHNALDMDLYLRIAPELYLKRLIVGGF---- 248 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCCCCC-----CCCCCCCC---EEEECCCCCCEEEEECCHHHHHHHHHCCC----
T ss_conf 9999999999999987797584160003557-----87322650---12202367756876241899998875372----
Q ss_pred CCHHHHHHHHHHCCCCCCCCCC-----CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHH-HCCCCCCCCEEECCC----CH
Q ss_conf 4112331013330258764442-----1111100012100002457889999999997-518887771130366----05
Q gi|254780928|r 104 FPCRTYRIGPVFRNEKHGPGRF-----RQFIQCDVDNVGSSAETADAEMCMMMADTLE-AVGIKRNDYHIGINN----RK 173 (496)
Q Consensus 104 ~p~k~yy~g~vfR~e~p~~Gr~-----REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~-~lgl~~~~~~I~in~----~~ 173 (496)
T Consensus 249 --erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~--D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~ 324 (502)
T COG1190 249 --ERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYE--DLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRIT 324 (502)
T ss_pred --HHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCEEEEE
T ss_conf --142230552003787666484235689999985799--9999999999999999549737878997675489722566
Q ss_pred HHHHHHHHHCC
Q ss_conf 58999998325
Q gi|254780928|r 174 ILDGILEKIGL 184 (496)
Q Consensus 174 il~~il~~lgi 184 (496)
T Consensus 325 m~dal~e~~g~ 335 (502)
T COG1190 325 MVDALKEYLGV 335 (502)
T ss_pred HHHHHHHHHCC
T ss_conf 48999987186