HHsearch alignment for GI: 254780928 and conserved domain: PRK03772
>PRK03772 threonyl-tRNA synthetase; Validated.
Probab=100.00 E-value=2.8e-32 Score=228.75 Aligned_cols=363 Identities=16% Similarity=0.213 Sum_probs=235.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHH
Q ss_conf 99876588668999999999999999985984801652022887520267554333221689869998899988883899
Q gi|254780928|r 12 PRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPL 91 (496)
Q Consensus 12 P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~~ 91 (496)
T Consensus 260 ~pG~~fwlP~G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw-~~SGH~~~Y~e~Mf~~-~~e~~ey~lKPMNCP~H 337 (642)
T PRK03772 260 APGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLW-EKTGHWDNYADAMFTT-SSENREYAIKPMNCPGH 337 (642)
T ss_pred CCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCCHHHH-HHCCHHHHHHCCCCCC-CCCHHHHCCCCCCCHHH
T ss_conf 887636658588999999999999999869859855432137788-7344476641034223-42014430467787348
Q ss_pred HHHHHHH-HHHCCCCHHHHHHHHHHCCCCCCC--C--CCCCCCCCCHHHHHCCCHHH-HH-HHHHHHHHHHHHCCCCCCC
Q ss_conf 9999951-120554112331013330258764--4--42111110001210000245-78-8999999999751888777
Q gi|254780928|r 92 ARYVAEN-FDTIVFPCRTYRIGPVFRNEKHGP--G--RFRQFIQCDVDNVGSSAETA-DA-EMCMMMADTLEAVGIKRND 164 (496)
Q Consensus 92 aR~~~~~-~~~~~~p~k~yy~g~vfR~e~p~~--G--r~REf~Q~g~eiiG~~~~~~-Da-Eii~l~~~~l~~lgl~~~~ 164 (496)
T Consensus 338 ~~iy~~~~rSYRdLPlR~aEfg~~~R~E~SG~L~GL~RVR~FtqdDaHIFC~~dQi~~Ei~~~l~~~~~vy~~fGf~--~ 415 (642)
T PRK03772 338 VQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNSCIKMVYDMYSTFGFE--K 415 (642)
T ss_pred HHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCC--E
T ss_conf 89986166434436545554113431666655347456889987884355378999999999999999999973986--3
Q ss_pred CEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 11303660558999998325603564334555333220012896789986210165003555304899977899888740
Q gi|254780928|r 165 YHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFL 244 (496)
Q Consensus 165 ~~I~in~~~il~~il~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (496)
T Consensus 416 ~~~~LStrpe-----k~~G~~e~--------------------W~~AE~~L~~aL~~~g~~y~~~~Geg--------AFY 462 (642)
T PRK03772 416 IVVKLSTRPE-----KRIGSDEM--------------------WDRAEADLAVALEENNIPFEYQPGEG--------AFY 462 (642)
T ss_pred EEEEECCCCH-----HCCCCHHH--------------------HHHHHHHHHHHHHHCCCCEEECCCCC--------CCC
T ss_conf 8999626822-----02588889--------------------99999999999997399704556763--------444
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC--CCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 478568899899860357325888999999999987508884430011010012--212341248998546667767666
Q gi|254780928|r 245 SIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRG--LEYYTGCVYEAILGFPVMNEKQKP 322 (496)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~Dl~lvRg--LdYYTG~vFE~~~~~~~~~~~~~~ 322 (496)
T Consensus 463 ---GPKID----------~~v~Dalg---------R~wq~--~TiQlDF~lP~RF~l~Y-~~----------~dg~~~~P 507 (642)
T PRK03772 463 ---GPKIE----------FTLYDCLD---------RAWQC--GTVQLDFSLPGRLSASY-VG----------EDNERKVP 507 (642)
T ss_pred ---CCCCC----------EEEECCCC---------CEEEE--CCCEEECCCHHHCCCEE-EC----------CCCCCCCC
T ss_conf ---55302----------59970789---------76880--23243001354428888-87----------89985785
Q ss_pred CCE-EEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHC-CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 310-1100323235521112345677421331101689999973-68776655577148998269768999999999999
Q gi|254780928|r 323 VVF-GSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSL-ESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQML 400 (496)
Q Consensus 323 ~~~-~aI~~GGRYD~L~~~f~~~~~pavGfaigverl~~~l~~~-~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~L 400 (496)
T Consensus 508 VmIHRAi--------------------lG---S~ERfiaiLiEh~~G~~P~WLaP~Qv~VipI--s~~~~~YA~~v~~~L 562 (642)
T PRK03772 508 VMIHRAI--------------------LG---SMERFIGILTEEYAGFFPTWLAPVQVVVMNI--TDSQSDYVQEVTKKL 562 (642)
T ss_pred EEEEECC--------------------CC---CHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHH
T ss_conf 8999246--------------------47---7899999999980799985647604799954--815899999999999
Q ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHH
Q ss_conf 98798399971899998899999987799899998872874881899787888364331120144320233510307999
Q gi|254780928|r 401 RTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE 480 (496)
Q Consensus 401 r~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~ 480 (496)
T Consensus 563 ~~~giRv~vD~~-~e~l~~KIR~a~~~kiPy~lVvGdkE~~~~~VsvR~r~~~~------------------~~~~~l~~ 623 (642)
T PRK03772 563 QNAGIRVKADLR-NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKD------------------LGSMDVND 623 (642)
T ss_pred HHCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEEEEHHHHHCCEEEEEECCCCC------------------CCEEEHHH
T ss_conf 978978999789-98187999998761799899980246525958999778973------------------57167999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780928|r 481 LVSTVKKILQ 490 (496)
Q Consensus 481 l~~~~~~~l~ 490 (496)
T Consensus 624 fi~~l~~ei~ 633 (642)
T PRK03772 624 FIEKLQQEIR 633 (642)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998