HHsearch alignment for GI: 254780928 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=98.62 E-value=5.2e-08 Score=71.20 Aligned_cols=138 Identities=20% Similarity=0.411 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCC-CCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999859848016520228875202675-5433322168986999889998888389999999511205541
Q gi|254780928|r 27 NRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPD-EDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFP 105 (496)
Q Consensus 27 ~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~-~~~~~k~~y~f~D~~g~~l~LRpDlT~~~aR~~~~~~~~~~~p 105 (496)
T Consensus 243 Gkler~it~ffvdrGfleiksPiliP~ey~ermGi~ndtelskqifrv----dkn~ClrPmlaP~lynylrkldr~lP~P 318 (453)
T TIGR02367 243 GKLEREITKFFVDRGFLEIKSPILIPLEYVERMGIDNDTELSKQIFRV----DKNLCLRPMLAPTLYNYLRKLDRILPDP 318 (453)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 467666766653124023236310105688650776402566666644----1001012100056899999987537896
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHH
Q ss_conf 123310133302587644421111100012100002457889999999997518887771130366055
Q gi|254780928|r 106 CRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKI 174 (496)
Q Consensus 106 ~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~lgl~~~~~~I~in~~~i 174 (496)
T Consensus 319 ik~fe~GPCyrkesdGkehleeftm~nfCqmGsGCtren--le~~i~~fl~~l~i---df~i-vGdsCm 381 (453)
T TIGR02367 319 IKVFEVGPCYRKESDGKEHLEEFTMLNFCQMGSGCTREN--LEALIKEFLDYLEI---DFKI-VGDSCM 381 (453)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHCC---CEEE-ECCEEE
T ss_conf 479860675243565335666666555431478732677--99999998876154---2478-524246