HHsearch alignment for GI: 254780928 and conserved domain: cd00769
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=97.44 E-value=0.00038 Score=46.11 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECC-CCCEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999985984801652022887520267554333221689869-9988999888838999999951120554
Q gi|254780928|r 26 RNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDD-DGQWISLRYDLTAPLARYVAENFDTIVF 104 (496)
Q Consensus 26 ~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~-~g~~l~LRpDlT~~~aR~~~~~~~~~~~ 104 (496)
T Consensus 2 ~~~l~~~ir~~L~~~Gf~Ev~t~s~~~~~~~~~~~~~----~~~~i~l~NPls~e~~~lR~sLlp~LL~~~~~N~~r~~~ 77 (198)
T cd00769 2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGG----LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNK 77 (198)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCC----CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6799999999999789714130676898999872488----787389708865668898887799999999865056777
Q ss_pred CHHHHHHHHHHCCCC
Q ss_conf 112331013330258
Q gi|254780928|r 105 PCRTYRIGPVFRNEK 119 (496)
Q Consensus 105 p~k~yy~g~vfR~e~ 119 (496)
T Consensus 78 ~~~lFEiG~vy~~~~ 92 (198)
T cd00769 78 PLRLFEIGRVFLKDE 92 (198)
T ss_pred CCEEEEEEEEEECCC
T ss_conf 732899763896688