HHsearch alignment for GI: 254780928 and conserved domain: cd00771
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.71 E-value=1.4e-16 Score=126.74 Aligned_cols=158 Identities=20% Similarity=0.290 Sum_probs=128.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHH
Q ss_conf 79987658866899999999999999998598480165202288752026755433322168986999889998888389
Q gi|254780928|r 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAP 90 (496)
Q Consensus 11 ~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~ 90 (496)
T Consensus 18 ~g~G~~~w~P~G~~i~~~L~~~ir~~~~~~Gy~eV~tP~i~~~~Lw-~~SGH~~~y~e~mf~~-~~~~~~~~LkPmnCp~ 95 (298)
T cd00771 18 AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELW-ETSGHWDHYRENMFPF-EEEDEEYGLKPMNCPG 95 (298)
T ss_pred CCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH-HHCCCCCCCCCCEEEE-EECCCCEEEECCCCHH
T ss_conf 6676578838889999999999999999869989988612665567-5477631136856888-8625416885068688
Q ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHCCCCCC--CC--CCCCCCCCCHHHHHCCCHHH-HH-HHHHHHHHHHHHCCCCCC
Q ss_conf 999999511-2055411233101333025876--44--42111110001210000245-78-899999999975188877
Q gi|254780928|r 91 LARYVAENF-DTIVFPCRTYRIGPVFRNEKHG--PG--RFRQFIQCDVDNVGSSAETA-DA-EMCMMMADTLEAVGIKRN 163 (496)
Q Consensus 91 ~aR~~~~~~-~~~~~p~k~yy~g~vfR~e~p~--~G--r~REf~Q~g~eiiG~~~~~~-Da-Eii~l~~~~l~~lgl~~~ 163 (496)
T Consensus 96 h~~i~~~~~~SYrdLPlR~~E~g~~~R~E~sG~L~GL~RvR~FtqdDaHiFc~~eQ~~~E~~~~~~~~~~vy~~fG~~-- 173 (298)
T cd00771 96 HCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFF-- 173 (298)
T ss_pred HHHHHHCCCCCHHHCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 999986355673434676520750554767767557445556745763244168899999999999999999982887--
Q ss_pred CCEEECCCC
Q ss_conf 711303660
Q gi|254780928|r 164 DYHIGINNR 172 (496)
Q Consensus 164 ~~~I~in~~ 172 (496)
T Consensus 174 ~~~~~ls~r 182 (298)
T cd00771 174 DYKVELSTR 182 (298)
T ss_pred CCEEEEECC
T ss_conf 324899647