HHsearch alignment for GI: 254780928 and conserved domain: cd00772
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.73 E-value=6.8e-17 Score=128.88 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCC-CCCCEEEEECCCCCE----EEE
Q ss_conf 037998765886689999999999999999859848016520228875202675543-332216898699988----999
Q gi|254780928|r 9 AELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDR-PNKGVFSLQDDDGQW----ISL 83 (496)
Q Consensus 9 ~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~-~~k~~y~f~D~~g~~----l~L 83 (496)
T Consensus 18 ~~~~~G~~~~lP~G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ks-gr~~~~~~~e~~~~~~~~~~~~e~~~~L 96 (264)
T cd00772 18 QGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKE-AEHDEGFSKELAVFKDAGDEELEEDFAL 96 (264)
T ss_pred CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHC-CCHHHCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 489887588890599999999999999999829949812567998999976-9844437852379973487421235201
Q ss_pred CCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCHHHHH---HHHHHHHHHHH
Q ss_conf 8888389999999511-2055411233101333025-87644--4211111000121000024578---89999999997
Q gi|254780928|r 84 RYDLTAPLARYVAENF-DTIVFPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAETADA---EMCMMMADTLE 156 (496)
Q Consensus 84 RpDlT~~~aR~~~~~~-~~~~~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~~~Da---Eii~l~~~~l~ 156 (496)
T Consensus 97 ~PT~Ee~~~~~~~~~i~SyrdLPl~lyQ~~~~fR~E~r~r~GllR~REFlmkDahsf~~t~e~a~~~y~~~~~~Y~~if~ 176 (264)
T cd00772 97 RPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIAR 176 (264)
T ss_pred CCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 67786899999986407665579778765578605788554332320434110353259999999999999999999999
Q ss_pred HCC-CC
Q ss_conf 518-88
Q gi|254780928|r 157 AVG-IK 161 (496)
Q Consensus 157 ~lg-l~ 161 (496)
T Consensus 177 ~lg~lp 182 (264)
T cd00772 177 DLAAID 182 (264)
T ss_pred HHCCCC
T ss_conf 966985