HHsearch alignment for GI: 254780928 and conserved domain: cd00778
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.67 E-value=9e-16 Score=121.57 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=113.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCC----CCEEEECC
Q ss_conf 37998765886689999999999999999859848016520228875202675543332216898699----98899988
Q gi|254780928|r 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDD----GQWISLRY 85 (496)
Q Consensus 10 ~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~----g~~l~LRp 85 (496)
T Consensus 19 ~pv~G~~~~lP~G~~i~~~l~~~~r~~~~~~G~~ev~~P~l~~~~~~~k~sgh~~~y~~emf~v~~~g~~~~d~~y~LkP 98 (261)
T cd00778 19 GPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRP 98 (261)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 79983088863289999999999999999869969988332788999974281430576533552168520135603478
Q ss_pred CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCHHHHHH---HHHHHHHHHHHC
Q ss_conf 88389999999511-2055411233101333025-87644--42111110001210000245788---999999999751
Q gi|254780928|r 86 DLTAPLARYVAENF-DTIVFPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAETADAE---MCMMMADTLEAV 158 (496)
Q Consensus 86 DlT~~~aR~~~~~~-~~~~~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~~~DaE---ii~l~~~~l~~l 158 (496)
T Consensus 99 mne~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~s~~~gL~RvReF~~dDahs~~~t~eq~~~e~~~~~~~y~~i~~~l 178 (261)
T cd00778 99 TSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDL 178 (261)
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88699999997350540227825553042243778888765325425234233655899999999999999999999984