RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(496 letters)
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 284 bits (728), Expect = 3e-77
Identities = 147/508 (28%), Positives = 221/508 (43%), Gaps = 66/508 (12%)
Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60
M K K+ P GF + E R+ +LD+IR +YE+YGF PIETP +E + L
Sbjct: 4 MAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG 63
Query: 61 PDEDRPNKGVFSLQ------------DDDGQWISLRYDLTAPLARYVAENFDTIVFPCRT 108
D G+ + D + +L++D T PLA Y+A + + + FP
Sbjct: 64 NQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFAR 123
Query: 109 YRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSA--ETADAEMCMMMADTLEAVGIKRNDYH 166
Y++ VFR E+ GRFRQF QCD+D VG DA+M ++ + EAV I D+
Sbjct: 124 YQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIG--DFV 181
Query: 167 IGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDF 226
I INNRK+L G + + + + + ID L+K G VKL L
Sbjct: 182 IRINNRKVLTGFFQSLNISETQIKSC----ISIIDNLEKIGEAKVKLEL----------- 226
Query: 227 TKGANLTSEQIDIMVSFLSI-----DLEKSMHELYELVKGTIAGEKGFNELVVISELVRK 281
+ + EQ ++ F+ I D+ + L + + + G +EL + VR
Sbjct: 227 -EKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRN 285
Query: 282 SGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRF 341
G R I I RGL YYTG VYE L GS+ GGRY+ LV F
Sbjct: 286 LGVPDKRFCIDLAIARGLNYYTGTVYETTLI--------GHEALGSICSGGRYEELVGTF 337
Query: 342 KGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLR 401
G+ +P G SIG++RLI L V++ M + + Y +Q LR
Sbjct: 338 IGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNM--QDELMPTYLKVSQQLR 395
Query: 402 TAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIK 461
AG+ + G Q + AD++ +I G E + +KDL G+
Sbjct: 396 QAGLNVITNFE-KRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGE------- 447
Query: 462 NNESWREARVAQITIPISELVSTVKKIL 489
Q+ + +++L +K+ L
Sbjct: 448 -----------QVEVALADLAEEIKRRL 464
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: HIS; 1.80A
{Trypanosoma cruzi} PDB: 3hrk_A* 3hrj_A* 3hri_A
Length = 456
Score = 278 bits (711), Expect = 2e-75
Identities = 107/481 (22%), Positives = 195/481 (40%), Gaps = 48/481 (9%)
Query: 3 KKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPD 62
+K + E +G D P + +R R + D + +GF+ + P+LE + + +
Sbjct: 23 QKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGE 82
Query: 63 EDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGP 122
E + +F+ G ++LR ++T LAR + +++ P + Y I +R E
Sbjct: 83 E--ITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITR 140
Query: 123 GRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKI 182
GR R+ Q ++D VG + +A+ E+ + ++G+ D I +N+RK+L ++E+
Sbjct: 141 GRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQA 200
Query: 183 GLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVS 242
G+ D V +DK++K + V+ L + + L+ + ID +
Sbjct: 201 GVTSDKFAP----VCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQ 256
Query: 243 FLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYY 302
+ + E + G + + +++VRGL YY
Sbjct: 257 RVGEEHEAVKELRQFFEQVEAYG-------------------YGDWVLFDASVVRGLAYY 297
Query: 303 TGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKG-QNVPATGFSIGISRLIVA 361
TG V+E + F ++ GGGRYD L++ + +P GF G ++
Sbjct: 298 TGIVFEGF---------DREGKFRALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVEL 348
Query: 362 LKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQL 421
L+ + + V+I D + LR AG A++ L K
Sbjct: 349 LQEKRLLPDIPHVVDDVVIPF---DESMRPHALAVLRRLRDAGRSADIILD-KKKVVQAF 404
Query: 422 KYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISEL 481
YADR A++ E RG +Q+K L +G +E E +P+ L
Sbjct: 405 NYADRVGAVRAVLVAPEEWERGEVQVKMLREGTG--KEEGGAE-------RGFAVPLDRL 455
Query: 482 V 482
V
Sbjct: 456 V 456
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 239 bits (611), Expect = 9e-64
Identities = 94/436 (21%), Positives = 171/436 (39%), Gaps = 46/436 (10%)
Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60
M K E P G D + + + I D + +G+D IETP LEY +++G
Sbjct: 4 MSKPFMF--EKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS 61
Query: 61 PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH 120
D+ +F L D G + LR D+TAP+AR VA + +P R V+R +++
Sbjct: 62 AILDQQ---LFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQN 118
Query: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180
G+ +F Q V+ +G +AD E+ +M L+ G +++ + I + ++ +L
Sbjct: 119 EGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAG--LSEFKVAIGHVGYVNALLM 176
Query: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240
+ + R R + + + G + L D +
Sbjct: 177 DVVGNEQRADRLR----RFLYEKNYVGYREHVKSLNLSTID---------------KSRL 217
Query: 241 VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE 300
++ LS+ ++ E + T G+ E+ + E++ G S +K T+V +
Sbjct: 218 MNLLSLRGGRAAIEEARGLIQTEKGKTALAEMTKLYEVLESYGA-SEYVKFDLTLVLHMS 276
Query: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360
YYTG V+E + + GGRYD L+S+F + ATGF + I L+
Sbjct: 277 YYTGVVFEGY----------GNRLGVPLCSGGRYDELLSKF-HRPAQATGFGVRIDLLVE 325
Query: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ 420
AL S + + I + + + + R G + +
Sbjct: 326 ALNGEIISNGHEQ----TCILFSN---ERRFEAIELARKKRANGEAVVLQDLAGVTD-VD 377
Query: 421 LKYADRRNCPLAIIQG 436
++ ++ I
Sbjct: 378 AMSSNYQDVIYCIGTA 393
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 235 bits (600), Expect = 2e-62
Identities = 95/481 (19%), Positives = 179/481 (37%), Gaps = 66/481 (13%)
Query: 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDE-DRPNK 68
++PRG D ++ + I + + + Y + I TP+ E +D + + D D K
Sbjct: 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQK 62
Query: 69 GVFSLQDDDGQWISLRYDLTAPLARYVAEN--FDTIVFPCRTYRIGPVFRNEKHGPGRFR 126
+++ +D + I+LR + TA + R E+ P + Y GP+FR E+ GR+R
Sbjct: 63 EMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYR 122
Query: 127 QFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHG 186
QF Q V+ +G+ + DAE+ M+ ++ G+K I + +
Sbjct: 123 QFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKH 182
Query: 187 DDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLSI 246
+ + D + +++L + D + K A ++ ++
Sbjct: 183 FEPVIHEFC----SDCQSRLHTDPMRILDCKV--DRDKEAIKTAPRITDFLNEESKAYYE 236
Query: 247 DLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCV 306
++ + +L +VRGL+YYT
Sbjct: 237 QVKAYLDDLG------------------------------IPYTEDPNLVRGLDYYTHTA 266
Query: 307 YEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSLE 366
+E +M+ ++ GGGRY+GL+ G + GF++ I RL++AL+
Sbjct: 267 FEL-----MMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEG 321
Query: 367 SSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADR 426
+ + + + + LR GI+A+ + Q+K ADR
Sbjct: 322 ---IELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDY-LQRKIKGQMKQADR 377
Query: 427 RNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVK 486
I+ G E + +K++ G+ TI + LV K
Sbjct: 378 LGAKFTIVIGDQELENNKIDVKNMTTGE------------------SETIELDALVEYFK 419
Query: 487 K 487
K
Sbjct: 420 K 420
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 191 bits (486), Expect = 2e-49
Identities = 101/485 (20%), Positives = 185/485 (38%), Gaps = 67/485 (13%)
Query: 7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL-PDEDR 65
+ A RG D KE+R+ RI+ + R + E G + TP+ E + K + D
Sbjct: 1 MTARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDI 60
Query: 66 PNKGVFSLQDDDGQWISLRYDLTAPLARYVAENF-DTIVFPCRTYRIGPVFRNEKHGPGR 124
K +F+ QD G+ ++LR + TA + R E+ P R + GP+FR E+ GR
Sbjct: 61 VRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGR 120
Query: 125 FRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGL 184
+RQF Q + + +GS DAE +++ + L+ +G++R +
Sbjct: 121 YRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAY-- 178
Query: 185 HGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFL 244
++ + D ++ +++L + D + G + +
Sbjct: 179 --LREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAH 236
Query: 245 SIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTG 304
++E+ + L ++ +VRGL+YY
Sbjct: 237 LKEVERHLERLSV------------------------------PYELEPALVRGLDYYVR 266
Query: 305 CVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKS 364
+E ++ ++GGGGRYDGL G VP GF+ G+ R+ +AL++
Sbjct: 267 TAFEVHH--------EEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEA 318
Query: 365 LESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYA 424
K + +++++ + LR +RAE L + L+ A
Sbjct: 319 EGFGLPEEKGPDLY---LIPLTEEAVAEAFYLAEALR-PRLRAEYALA-PRKPAKGLEEA 373
Query: 425 DRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVST 484
+R A G E G + +K LA G+ Q+ + E+
Sbjct: 374 LKRGAAFAGFLGEDELRAGEVTLKRLATGE------------------QVRLSREEVPGY 415
Query: 485 VKKIL 489
+ + L
Sbjct: 416 LLQAL 420
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 189 bits (480), Expect = 1e-48
Identities = 101/486 (20%), Positives = 178/486 (36%), Gaps = 78/486 (16%)
Query: 12 PRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDE-DRPNKGV 70
RG D E I RI +++N+ +YG+ I P++E + + + + D K +
Sbjct: 7 IRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEM 66
Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQ 130
++ +D +G ++LR + TA R E+ R + IGP+FR+E+ GR+RQF Q
Sbjct: 67 YTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQ 126
Query: 131 CDVDNVGSSAETADAEMCMMMADT-----LEAVGIKRNDYHIGINNRKILDGILEKIGLH 185
+ G DAE+ M+ A + + + R L
Sbjct: 127 LGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQ 186
Query: 186 GDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLS 245
+KL+E + L
Sbjct: 187 HKEKLDEDCKRRMYTNPLRV---------------------------------------- 206
Query: 246 IDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGC 305
+D + + + + L + ++ +VRGL+YY
Sbjct: 207 LDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRT 266
Query: 306 VYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSL 365
V+E V N G+V GGRYDGLV + G+ PA GF++G+ RL++ ++++
Sbjct: 267 VFE-----WVTNSLGS---QGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAV 318
Query: 366 ESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLR--TAGIRAEMFLGSSKNFGNQLKY 423
K V I + +D+ S + LR G++ NF Q
Sbjct: 319 N---PEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNH-GGGNFKKQFAR 374
Query: 424 ADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVS 483
AD+ +A++ G E + G +KDL G+ Q + + +
Sbjct: 375 ADKWGARVAVVLGESEVANGTAVVKDLRSGE------------------QTAVAQDSVAA 416
Query: 484 TVKKIL 489
++ +L
Sbjct: 417 HLRTLL 422
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 174 bits (442), Expect = 3e-44
Identities = 109/482 (22%), Positives = 187/482 (38%), Gaps = 61/482 (12%)
Query: 6 KLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDR 65
+L+ E RGF D +++ + I + E +GF I+ P LEY D +
Sbjct: 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRI--KSGEE 60
Query: 66 PNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRF 125
+ +S D G+ ++L + T R V D P R Y V+R E+ GR+
Sbjct: 61 LLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQ-RPLRWYSFPKVWRYEEPQAGRY 119
Query: 126 RQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLH 185
R+ Q + D GS + ADAE+ + + L+ +G+ ++ Y I IN+RKI++ I+ +
Sbjct: 120 REHYQFNADIFGSDSPEADAEVIALASSILDRLGL-QDIYEIRINSRKIMEEIIGGMTSS 178
Query: 186 GDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLS 245
+ + L S I +
Sbjct: 179 DPFSVFSIIDRY-----------------------HKISREEFVDQLRSAGIGEDGVSMI 215
Query: 246 IDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGC 305
DL + E+ + T + + + +L+ G + + +IVRGL YYTG
Sbjct: 216 ADLCSGTRGIDEMARITGKSSEEIARMAAVEDLLASYGVKNV--RYDFSIVRGLSYYTGI 273
Query: 306 VYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSL 365
V+E + F ++ GGGRYD L S G++VPA GF +G + + + LK
Sbjct: 274 VFE---------AYDRSGQFRAILGGGRYDNLASLMSGESVPAVGFGMGDAVISLLLKRE 324
Query: 366 ESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYAD 425
N + + S Y++ LR G+ + + + QLKYA
Sbjct: 325 ----NVQIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM-ERGLSAQLKYAS 379
Query: 426 RRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTV 485
A+I G + RG++ I+++ G Q + + +V +
Sbjct: 380 AIGADFAVIFGERDLERGVVTIRNMYTGS------------------QENVGLDSVVEHL 421
Query: 486 KK 487
Sbjct: 422 IS 423
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, allosteric, evolution;
2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 167 bits (422), Expect = 7e-42
Identities = 75/372 (20%), Positives = 136/372 (36%), Gaps = 43/372 (11%)
Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60
G+ K+ LP A+ +++ +I +R ++ + + P EY+
Sbjct: 14 EGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALE 73
Query: 61 PD-EDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK 119
+ + + +F +GQ I+LRYD T PL R ++ D+ R G +FR EK
Sbjct: 74 SNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDS--TSARYSYFGKIFRKEK 131
Query: 120 HGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGIL 179
GR + Q ++ G SA+ ++ E+ + +E + N I + K
Sbjct: 132 RHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQ--LGLNKTVFEIGSAKF----- 184
Query: 180 EKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDI 239
+RL L L K L G +F+K ++I I
Sbjct: 185 -----------FQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFI 233
Query: 240 MVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGL 299
++ + + L+ ++ +L I I +V +
Sbjct: 234 TNELSRLENLVTNTKDDVLISSFDQLKEFSEKL-----------SMIKPIIIDLGMVPKM 282
Query: 300 EYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLI 359
+YYT +++A + GGRYD L+S F + A GF + ++
Sbjct: 283 DYYTDLMFKAYS----------SAANQPILSGGRYDQLLSNF-QEEAFAIGFCCHMDTIL 331
Query: 360 VALKSLESSTNN 371
AL+ E +N
Sbjct: 332 KALERQELEEDN 343
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 147 bits (371), Expect = 6e-36
Identities = 43/324 (13%), Positives = 96/324 (29%), Gaps = 64/324 (19%)
Query: 32 SIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPL 91
S + GF P P LE ++ F D G S+R D T +
Sbjct: 11 SFYSKATKKGFSPFFVPALEKAEEP----------AGNFF--LDRKGNLFSIREDFTKTV 58
Query: 92 ARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMM 151
+ + + V+R Q ++ V ++ E+ ++
Sbjct: 59 LNHRKRYSPD--SQIKVWYADFVYRYS---GSDLVAEYQLGLEKVPRNSLDDSLEVLEII 113
Query: 152 ADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGV 211
++ + I + + + +L++I +K VL ID + ++
Sbjct: 114 VESASE--FFEGPVIVEIGHTGVYEDLLKEIPKDLHEK------VLNLIDTKNLAEIE-- 163
Query: 212 KLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLSIDLEKSMHELYELVKGTIAGEKGFNE 271
+ + +++ ++ + +L +
Sbjct: 164 -------------FLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPL------SVRED 204
Query: 272 LVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGG 331
L+ S + + + + ++I T+ R +E Y G ++ + V G
Sbjct: 205 LLSASSFL-QEKFPTVSVEIDLTLARTIEEYCGLIFTIYD-----TSSSRL-----VAAG 253
Query: 332 GRYDGLVSRFKGQNVPATGFSIGI 355
G Y + G SI +
Sbjct: 254 GEYTVNGEK-------GVGGSIFL 270
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, Pro(Cys)RS, translation,
ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc
50803}
Length = 518
Score = 87.8 bits (217), Expect = 5e-18
Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 19/189 (10%)
Query: 7 LRAEL------PRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60
AEL +G + N I+ Y G I P + L K
Sbjct: 33 DAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKES 92
Query: 61 PDEDRPNKGVFSLQ----DDDGQWISLRYDLTAPLARYVAEN-FDTIVFPCRTYRIGPVF 115
F ++ + ++LR + ++ P + ++ +F
Sbjct: 93 DHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIF 152
Query: 116 RNEKHGP---GRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNR 172
R+E R R+ + ++AE A +++ + +
Sbjct: 153 RHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDEL-----CFKGQ 207
Query: 173 KILDGILEK 181
K+ ++
Sbjct: 208 KLRRVCWDR 216
Score = 62.8 bits (152), Expect = 2e-10
Identities = 32/258 (12%), Positives = 77/258 (29%), Gaps = 19/258 (7%)
Query: 247 DLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCV 306
D + + ++++ + E F + + + G T +
Sbjct: 182 DAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGI 241
Query: 307 YE--------AILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRL 358
+ + + + G R G + I+ +
Sbjct: 242 HNLGQRFSSTFDILYANKANESVHPYLTCAGISTRVLACALSIHGDS-GGLVLPPLIAPI 300
Query: 359 IVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFG 418
V + + N +E ++ ++ ++ + G+R + SK+ G
Sbjct: 301 HVVIIPIGCGKKNNQESDQQVLGKVN---------EIADTLKSKLGLRVSIDDDFSKSMG 351
Query: 419 NQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPI 478
++L Y + + PL I G + + G + GK+ R I E + +
Sbjct: 352 DKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSS-HTTENHE 410
Query: 479 SELVSTVKKILQENKEEI 496
+ + +K L K +
Sbjct: 411 LVVKNVIKDELDAYKARL 428
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 82.8 bits (204), Expect = 2e-16
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%)
Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEY------SDSLGKFLPDED 64
G+ I + +R+ + Y + ++ P + + +
Sbjct: 26 HNDGW--------TIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA-- 75
Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK----H 120
+F+ ++ ++ + + + P R G RNE H
Sbjct: 76 -----MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLH 130
Query: 121 GPGRFRQFIQCDVDNVGSS--AETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGI 178
G R R F Q D + ++ D G + + ++ R
Sbjct: 131 GLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFE--KIVVKLSTRPEKRIG 188
Query: 179 LEKIGLHGDDKLNERL 194
+++ + L L
Sbjct: 189 SDEMWDRAEADLAVAL 204
Score = 63.2 bits (153), Expect = 1e-10
Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 22/205 (10%)
Query: 290 KISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPAT 349
I G + G E L + Q V R +
Sbjct: 208 NIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV 267
Query: 350 GFS---IGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIR 406
+G + + + E + + PV + M+ TQ L AGIR
Sbjct: 268 MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIR 327
Query: 407 AEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESW 466
+ L ++ G +++ R P ++ G E G + ++
Sbjct: 328 VKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKD------------ 374
Query: 467 REARVAQITIPISELVSTVKKILQE 491
++ ++E++ +++ ++
Sbjct: 375 ------LGSMDVNEVIEKLQQEIRS 393
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine,
ATP analogue, non-natural amino acid, unnatural amino
acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina
mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A*
2q7g_A* 2q7h_A* 2zim_A*
Length = 291
Score = 81.7 bits (201), Expect = 3e-16
Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82
++ I + + GF I++P+L + + + D D + +
Sbjct: 77 ENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTE---LSKQIFRVDKNFC 133
Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142
LR L L Y+ + + P + + IGP +R E G +F + +GS
Sbjct: 134 LRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTR 193
Query: 143 ADAEMCMMMADTLEAVGIK----RNDYHIGINNRKILDGILEKIG 183
+ E ++ D L +GI + + + ++ G LE
Sbjct: 194 ENLE--SIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSS 236
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 72.9 bits (178), Expect = 2e-13
Identities = 32/156 (20%), Positives = 48/156 (30%), Gaps = 3/156 (1%)
Query: 7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRP 66
+ K + + + GF + TP + +L K ED P
Sbjct: 54 MSQGKRHLEQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHP 113
Query: 67 NKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFR 126
D LR L L E P R + IG +R E G
Sbjct: 114 LFSQVFWLDGK---KCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLN 170
Query: 127 QFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKR 162
+F ++ +G+ E + M LEA GI+
Sbjct: 171 EFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIRE 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 70.0 bits (171), Expect = 1e-12
Identities = 70/452 (15%), Positives = 136/452 (30%), Gaps = 184/452 (40%)
Query: 30 LDSIRNIYENYGFDPIETPLLEYSDS-LGKFLPDEDRPNKGVFSLQDDDGQWISLR---- 84
+ +R++Y+ Y + L+++S L + + K VF+ + +W+
Sbjct: 170 FEELRDLYQTYH--VLVGDLIKFSAETLSELIRTTLDAEK-VFTQGLNILEWLENPSNTP 226
Query: 85 ---YDLTAP----------LARY-VAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQ 130
Y L+ P LA Y V + +G PG R +++
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVT---------AKL--LG------FT-PGELRSYLK 268
Query: 131 CDVDNVGSSAE-----TADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGL- 184
G++ TA A + D+ E + ++ RK + +L IG+
Sbjct: 269 ------GATGHSQGLVTAVA---IAETDSWE-------SFF--VSVRKAIT-VLFFIGVR 309
Query: 185 --------------------HGD---------------------DKLNERL-----IVLR 198
+ + +K N L + +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 199 AIDKLDKF---G----LQGVKLLLGEGRTDNSGD-----FTKGANLTSEQIDIMVSFLSI 246
++ G L G+ L L + + + D F++ ++ FL +
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE------RKLKFSNRFLPV 423
Query: 247 D-------LEKSMHELYELVKGTIAGEKGFNELVVI--SEL------------VRKSGYN 285
L + +L+ + V ++ +R +
Sbjct: 424 ASPFHSHLLVPA----SDLINKDLVKNN-----VSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 286 SNRIKISSTIVRGLEYYTGCV-YEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQ 344
IS IV + V +E F + + FG GG L R
Sbjct: 475 -----ISERIVDCI--IRLPVKWETTTQFKATH----ILDFGP-GGASGLGVLTHR---- 518
Query: 345 NVPATGFSIGISRLIVALKSLESSTNNIKEMG 376
N TG R+IVA +L+ + ++ + G
Sbjct: 519 NKDGTGV-----RVIVA-GTLDINPDD--DYG 542
Score = 60.3 bits (146), Expect = 8e-10
Identities = 95/510 (18%), Positives = 150/510 (29%), Gaps = 206/510 (40%)
Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAPLARYVA-----ENFDTIVFPCRTYRIGPVFRNEK 119
RP +L G SL + L P A + E F+ I P T G +E
Sbjct: 7 RP----LTLSH--G---SLEHVLLVPTASFFIASQLQEQFNKI-LPEPTE--GFAADDEP 54
Query: 120 HGP----GRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKIL 175
P G+F ++ + + L ++ L
Sbjct: 55 TTPAELVGKFLGYV----------SSLVEPSKVGQFDQVLNLC---LTEFE-----NCYL 96
Query: 176 DGILEKI-----GLHGDDK--LNERLIVLRA--------IDKLDK--------------- 205
+G I L ++ L + +++ DK
Sbjct: 97 EG--NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 206 -----FGLQGVKLLLGEGRTDNSGD-FTKGANLTSEQIDIMVSFLSIDLEKSMHE-LYEL 258
FG QG N+ D F + +L + DL K E L EL
Sbjct: 155 QLVAIFGGQG-----------NTDDYFEELRDL----YQTYHVLVG-DLIKFSAETLSEL 198
Query: 259 VKGTIAGEK----GFNELVVISELVRKSGYNSNRIK-------ISSTI---VRGL----E 300
++ T+ EK G N ++ L N +S I + G+
Sbjct: 199 IRTTLDAEKVFTQGLN---ILEWL-------ENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360
Y +LGF P G L S KG ATG S G+ +
Sbjct: 249 YVVTA---KLLGF-------TP---------GE---LRSYLKG----ATGHSQGL---VT 279
Query: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGS-SKNFGN 419
A V I +DS + + +R A I F+G
Sbjct: 280 A----------------VAIAE----TDSWESF--FVS-VRKA-ITVLFFIGVRC----- 310
Query: 420 QLKYADRRNCPLAIIQGTGERSRG----MLQIKDLAKGKELSREI-KNNESWREARVAQI 474
Y + P +I++ + E + G ML I +L + +++ + K N + Q+
Sbjct: 311 YEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGK--QV 366
Query: 475 TI--------------PIS--ELVSTVKKI 488
I P S L T++K
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Score = 35.3 bits (81), Expect = 0.034
Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 61/177 (34%)
Query: 337 LVSRFKGQNVPATGF--------SIGISRLI--VALKSLESS---TNNIKEMGPVLITTM 383
LV +F G+ +G + + L E+ N+I L +
Sbjct: 60 LVGKF-------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH----ALAAKL 108
Query: 384 DHDSD-SLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ---LKYADRRNCPLAII---QG 436
++D +L K + ++++ I A + + + + N L I QG
Sbjct: 109 LQENDTTLVKTK---ELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 437 TGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIP--ISELVSTVKKILQE 491
+ + EL R++ T + +L+ + L E
Sbjct: 165 NTD---DYFE--------EL-RDLYQ------------TYHVLVGDLIKFSAETLSE 197
Score = 31.5 bits (71), Expect = 0.52
Identities = 53/254 (20%), Positives = 89/254 (35%), Gaps = 91/254 (35%)
Query: 244 LSIDL---EKSMHELYELVKGTIAGEKGFNEL-VVISELVRKS----GYNSNRIKISSTI 295
+ +DL K+ +++ GF+ L +VI+ V + G RI+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR----- 1685
Query: 296 VRGLEYYTGCVYEAILG--------FPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVP 347
E Y+ ++E I+ F +NE F S GL+S
Sbjct: 1686 ----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS------EKGLLS-------- 1727
Query: 348 ATGFSIGISRLIVALKSLESST-NNIKEMG--PVLITTMDHD----------SD-----S 389
AT F+ AL +E + ++K G P T H +D S
Sbjct: 1728 ATQFTQP------ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 390 LSKYQMYTQM-LRTAGIRAEMFLGSSKNFG---------------NQLKYADRRNCPLAI 433
L + Y M ++ A R E LG S N+G L+Y +
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDE--LGRS-NYGMIAINPGRVAASFSQEALQY---------V 1829
Query: 434 IQGTGERSRGMLQI 447
++ G+R+ +++I
Sbjct: 1830 VERVGKRTGWLVEI 1843
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline
+ tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A
{Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
PDB: 1h4q_A* 1h4t_A 1h4s_A
Length = 477
Score = 50.8 bits (121), Expect = 8e-07
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGV 70
P G+ I I + +++ G PL L K + + +
Sbjct: 40 RPYGY--------AIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPEL 91
Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAENFDTIV-----FPCRTYRIGPVFRNEK--HGPG 123
+ G+ + + + + + P + G V R E
Sbjct: 92 AVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFL 151
Query: 124 RFRQFIQCDVDNVGSSAETADAEMCMMM 151
R +F+ + ++ E A+ E+ M+
Sbjct: 152 RTSEFLWQEGHTAHATREEAEEEVRRML 179
Score = 38.5 bits (89), Expect = 0.003
Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 28/168 (16%)
Query: 333 RYDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVL---------ITTM 383
+D Q S G+S + + + + P L I
Sbjct: 239 AFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKD 298
Query: 384 DHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRG 443
+ L Q Q L G+R + G + + + P + G + G
Sbjct: 299 ESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGG 358
Query: 444 MLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQE 491
+ GKE T+P++ L + L
Sbjct: 359 QAVLASRLGGKE-------------------TLPLAALPEALPGKLDA 387
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA,
aminoacylation, translational regulation, protein/RNA,
ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 50.0 bits (119), Expect = 1e-06
Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 9/157 (5%)
Query: 24 RIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISL 83
I + +R+ + Y + ++ P + L + D +F+ ++ ++
Sbjct: 272 TIFRELEVFVRSKLKEYQYQEVKGPFM-MDRVLWEKTGHWDNYKDAMFTTSSENREYCIK 330
Query: 84 RYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK----HGPGRFRQFIQCDVDNVGSS 139
+ + + P R G RNE HG R R F Q D +
Sbjct: 331 PMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE 390
Query: 140 AETAD--AEMCMMMADTLEAVGIKRNDYHIGINNRKI 174
+ D ++ D G + + ++ R
Sbjct: 391 EQIRDEVNGCIRLVYDMYSTFGFE--KIVVKLSTRPE 425
Score = 36.2 bits (83), Expect = 0.016
Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 398 QMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELS 457
Q L AGIR + L ++ G +++ R P ++ G E G + ++
Sbjct: 560 QKLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKD--- 615
Query: 458 REIKNNESWREARVAQITIPISELVSTVKKILQE 491
++ ++E++ +++ ++
Sbjct: 616 ---------------LGSMDVNEVIEKLQQEIRS 634
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 48.3 bits (114), Expect = 4e-06
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 16/156 (10%)
Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGV 70
LP GF +IR + IRN+ + G D P+L D L K V
Sbjct: 34 LPYGF--------KIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEV 85
Query: 71 FSL----QDDDGQWISLRYDLTAPLARYVAEN-FDTIVFPCRTYRIGPVFRNEKHGPG-- 123
+ + + ++LR P+ + P + Y+I FR E
Sbjct: 86 YWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPL 145
Query: 124 -RFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAV 158
R R+ + + S + +
Sbjct: 146 IRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKF 181
Score = 32.1 bits (72), Expect = 0.29
Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 20/122 (16%)
Query: 375 MGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAII 434
+ V + + + K + + L+ R + G + + + PL I
Sbjct: 285 VVIVPLIFKGKEDIVMEKAKEIYEKLK-GKFRVHIDD-RDIRPGRKFNDWEIKGVPLRIE 342
Query: 435 QGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKE 494
G + + + + + + ++L+ V+K L E
Sbjct: 343 VGPKDIENKKITLFRRDTME------------------KFQVDETQLMEVVEKTLNNIME 384
Query: 495 EI 496
I
Sbjct: 385 NI 386
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 47.8 bits (113), Expect = 6e-06
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 7/165 (4%)
Query: 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKG 69
+ G IR I I + + G+D + TP+L D +
Sbjct: 258 LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDM 317
Query: 70 VFSLQDDDGQWISLRYDLTAPLAR-YVAENFDTIVFPCRTYRIGPVFRNEK----HGPGR 124
+Q D+ + + LR Y + P R +G + R E G R
Sbjct: 318 FPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQR 377
Query: 125 FRQFIQCDVDNVGSSAETAD--AEMCMMMADTLEAVGIKRNDYHI 167
R D + + + M+ D + G + + +
Sbjct: 378 VRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRL 422
Score = 35.4 bits (81), Expect = 0.028
Identities = 23/170 (13%), Positives = 48/170 (28%), Gaps = 39/170 (22%)
Query: 334 YDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVL----------ITTM 383
Y G V G + R + L +E I +
Sbjct: 503 YIGQDGEHHRPVVIHRGVVSTMERFVAFL---------TEETKGAFPTWLAPKQVQIIPV 553
Query: 384 DHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRG 443
+ D Q+ L++ G+R + ++ G +++ A + P I+ G E
Sbjct: 554 NVDLHYDYARQLQ-DELKSQGVRVSIDD-RNEKMGYKIREAQMQKIPYQIVVGDKEVENN 611
Query: 444 MLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENK 493
+ ++ Q T+ E + + ++ K
Sbjct: 612 QVNVRQYGSQD------------------QETVEKDEFIWNLVDEIRLKK 643
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 47.4 bits (112), Expect = 7e-06
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 21/149 (14%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDD-GQWI 81
+ R I+ IR + + G +ETP + + L P + F G +
Sbjct: 36 LLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHL----VPFETRFVGPGHSQGMNL 91
Query: 82 SLRYDLTAP---LARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGS 138
L T+P + R + +++ FRNE+ G +F +
Sbjct: 92 WLM---TSPEYHMKRLLVAGCG------PVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHY 142
Query: 139 SAETADAEMCMMMADTLEAVGIKRNDYHI 167
+ + D L+ V +
Sbjct: 143 DMY----RLMNEVDDLLQQVLDCPAAESL 167
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative; 1.65A {Pyrococcus
furiosus} SCOP: d.104.1.1
Length = 294
Score = 47.4 bits (112), Expect = 8e-06
Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 12/139 (8%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82
+ I+ +IL+ + + + GF + ++ S PD + + G +
Sbjct: 15 LDIQTKILEYMTDFFVKEGFKWLLPVII--SPITDPLWPDPAGEGMEPAEV-EIYGVKMR 71
Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFR---QFIQCDVDNVGSS 139
L + + +A + + + P R E R +F Q D + +
Sbjct: 72 LTHSMILHKQLAIAMGLK------KIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK 125
Query: 140 AETADAEMCMMMADTLEAV 158
E + ++
Sbjct: 126 MEDIMRLIERLVYGLFRKA 144
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris}
PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 47.1 bits (111), Expect = 1e-05
Identities = 70/482 (14%), Positives = 132/482 (27%), Gaps = 94/482 (19%)
Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGV 70
LP G R+ +I +R G + P L+ +D L + D +
Sbjct: 63 LPLGH--------RVLKKIEQIVREEQNRAGAIELLMPTLQLAD-LWRESGRYDAYGPEM 113
Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAEN-FDTIVFPCRTYRIGPVFRNEKHGPGRF---R 126
+ D + + + P Y I FR+E+ R
Sbjct: 114 LRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGR 173
Query: 127 QFIQCDVDNVGSSAETADAE---MCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIG 183
+F+ D + A M + T +G+K + I
Sbjct: 174 EFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLK--AIPMRAETGPI--------- 222
Query: 184 LHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSF 243
G D +E +++ + + L + + D GD T
Sbjct: 223 --GGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPI-------------- 266
Query: 244 LSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYT 303
K +Y A + +E V ++ + R I G +Y
Sbjct: 267 -----IKQWTSVY-------AATEDVHEPARYESEVPEANRLNTR-----GIEVGQIFYF 309
Query: 304 GCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALK 363
G Y + V G Y VSR G + A GI
Sbjct: 310 GTKYSDSMKANVTGPDGTDAPIHG----GSYGVGVSRLLGAIIEACHDDNGIIW------ 359
Query: 364 SLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKY 423
+ ++ D+ + + + L G+ + + G +
Sbjct: 360 -----PEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDD-TDQRAGAKFAT 413
Query: 424 ADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVS 483
AD P I G + G +++K + G + + ++++V+
Sbjct: 414 ADLIGIPWQIHVGPRGLAEGKVELKRRSDGA------------------RENLALADVVA 455
Query: 484 TV 485
+
Sbjct: 456 RL 457
>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein
biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP:
b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A
1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 45.8 bits (108), Expect = 2e-05
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82
+R++IL +IR GF +ETP+++ RP + D D
Sbjct: 183 FVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGA-----SARPFITHHNALDLDMY--- 234
Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142
LR L R V F+ + + I FRNE +F ++
Sbjct: 235 LRIAPELYLKRLVVGGFERV------FEINRNFRNEGISVRHNPEFTMMEL-------YM 281
Query: 143 ADAEMCMMMADT 154
A A+ ++ T
Sbjct: 282 AYADYHDLIELT 293
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M
5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1
d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Length = 585
Score = 45.2 bits (106), Expect = 4e-05
Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 20/237 (8%)
Query: 21 KEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQW 80
+ ++ R +I +R +++GF IETP+L + G R + G++
Sbjct: 136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEG------ARDYLVPSRV--HKGKF 187
Query: 81 ISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSA 140
+L + FD R Y+I FR+E R +F Q DV+ +A
Sbjct: 188 YALPQSPQLFKQLLMMSGFD------RYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTA 241
Query: 141 ETADAEMC-MMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRA 199
M ++ LE G+ D+ + +K L +L + +L++
Sbjct: 242 PQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKS 301
Query: 200 IDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLSIDLEKSMHELY 256
++ G + GA+LT +QID +F+ I K + +
Sbjct: 302 VEFAVFAG-----PANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIK 353
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase,
editing, translation; HET: P5A; 2.3A {Enterococcus
faecalis} PDB: 2j3m_A*
Length = 572
Score = 43.8 bits (102), Expect = 1e-04
Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 26/256 (10%)
Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETP------LLEYSDSLGKFLPDED 64
LP R+ ++ +R +E + P L + S + P+
Sbjct: 43 LPLAN--------RVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPN-- 92
Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAPLARYV-AENFDTIVFPCRTYRIGPVFRNEK---H 120
++ L+D + + L + E P Y+I +R+EK
Sbjct: 93 -----LYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRS 147
Query: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180
G R R+FI D + + + D ++ I + + G +
Sbjct: 148 GLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGK-D 206
Query: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240
++ E I L + + D K A I +
Sbjct: 207 SKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEV 266
Query: 241 VSFLSIDLEKSMHELY 256
+F ++ ++ + +
Sbjct: 267 ANFFEVEPQRIIKSVL 282
Score = 37.6 bits (86), Expect = 0.007
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 20/117 (17%)
Query: 378 VLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGT 437
++ D Q M+ AG + ++ G + AD CP+ I G
Sbjct: 474 HVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDD-RNERAGVKFADADLIGCPIRITVGK 532
Query: 438 GERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKE 494
K + E+ + + E + + EL ST+ ++ E
Sbjct: 533 ----------KAVDGVVEV-KIKRTGE--------MLEVRKEELESTLSILMNTTSE 570
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 43.5 bits (102), Expect = 1e-04
Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 24/135 (17%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82
RI+ + + R F + TP L + S G VF + G+
Sbjct: 178 FRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEG---------GSSVFEVTYFKGKA-Y 227
Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFR-QFIQCDVDNVGSSAE 141
L + + +F+ R Y IGPVFR E R +F D+ E
Sbjct: 228 LAQSPQFNKQQLIVADFE------RVYEIGPVFRAENSNTHRHMTEFTGLDM-------E 274
Query: 142 TADAEMCMMMADTLE 156
A E + DTL
Sbjct: 275 MAFEEHYHEVLDTLS 289
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 42.5 bits (99), Expect = 2e-04
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 20/139 (14%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLG---KFLPDEDRPNKGVFSLQDDDGQ 79
+R+R+R++ +I + + GF +ETP L S G +P P G
Sbjct: 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEP-----------GL 192
Query: 80 WISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSS 139
+ +L + D R ++I FR+E R F Q D++
Sbjct: 193 FYALPQSPQLFKQMLMVAGLD------RYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 246
Query: 140 AETADAEMCMMMADTLEAV 158
E +MA
Sbjct: 247 VEDVLELNERLMAHVFREA 265
>3e9h_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm; HET: KAA; 2.10A {Bacillus stearothermophilus}
PDB: 3e9i_A*
Length = 493
Score = 41.3 bits (96), Expect = 6e-04
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 20/139 (14%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNKGVFSLQDDDGQ 79
R+ I+ S+R +++G+ +ETP++ + F+ + + ++ +
Sbjct: 174 FITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELH 233
Query: 80 WISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSS 139
L R + + + Y IG VFRNE +F ++ +
Sbjct: 234 -----------LKRLIVGGLE------KVYEIGRVFRNEGISTRHNPEFTMLELYEAYAD 276
Query: 140 AETADAEMCMMMADTLEAV 158
++A V
Sbjct: 277 FRDIMKLTENLIAHIATEV 295
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase; HET: 5CA; 2.55A
{Methanothermobacterthermautotrophicus} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 40.8 bits (95), Expect = 6e-04
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 24/153 (15%)
Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLL-------EYSDSLGKFLPDE 63
+P GF IR L +R I + + + PLL + + + F +
Sbjct: 67 MPHGF--------MIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEV 117
Query: 64 DRPNKGVFSLQDDDGQWISLRYDLTAPLARYVA-ENFDTIVFPCRTYRIGPVFRNEKHGP 122
G + ++LR + A P R Y++ FR E
Sbjct: 118 YWVTHGG---LSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHT 174
Query: 123 G----RFRQFIQCDVDNVGSSAETADAEMCMMM 151
+ + ++A A+ ++ +
Sbjct: 175 RPLIRVREITTFKEAHTIHATASEAEEQVERAV 207
>3g1z_A Putative lysyl-tRNA synthetase; drug target, nucleotide,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: AMP; 1.95A {Salmonella
typhimurium}
Length = 326
Score = 39.8 bits (92), Expect = 0.001
Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 9/154 (5%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82
+ R I+ IR + + G +ETP + + G +
Sbjct: 17 LLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTD---IHLFPFETRFVGPGHSQGINLY 73
Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142
L + R +A +++ FRNE+ G +F +
Sbjct: 74 LMTSPEYHMKRLLAAGCG------PVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYR 127
Query: 143 ADAEMCMMMADTLEAVGIKRNDYHIGINNRKILD 176
E+ ++ L+ + Y +D
Sbjct: 128 LMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEID 161
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 38.7 bits (89), Expect = 0.003
Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 35/218 (16%)
Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETP------LLEYSDSLGKFLPDED 64
G IR + + + + G+ +ETP L + S + + +
Sbjct: 45 SLGGG--------PIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNN-- 94
Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAP----LARYVAENFDTIVFPCRTYRIGPVFRNEKH 120
++ D +G +++ VA++ + P + + G V R E
Sbjct: 95 -----MYLF-DIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPS 148
Query: 121 GPGRF----RQFIQCDVDNVGSSAETADA-----EMCMMMADTLEAVGIKRNDYHIGINN 171
G R F Q D + D E ++ + L +G+ + + ++
Sbjct: 149 GSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSM 208
Query: 172 RKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQ 209
E +G + + E + A +K+G+
Sbjct: 209 SDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGID 246
Score = 31.0 bits (69), Expect = 0.58
Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 13/119 (10%)
Query: 380 ITTMDHDSDSLSKY-QMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCP-LAIIQGT 437
+ T + + L G R + S + +++ + P + + G
Sbjct: 346 VKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGA 405
Query: 438 GERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKEEI 496
E +L ++ + ES + R+A ++ V + + +E + +
Sbjct: 406 KEVREKVLDVRVF-----------DLESMKRRRLAIAYGDAADAVENLAAVAEELESPV 453
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
Length = 346
Score = 38.4 bits (89), Expect = 0.003
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 105 PCRTYRIGPVFRNEK-HGPGRFRQFIQCDVDNVGSSAETADA--EMCMMMADTLEAVGIK 161
R FR E R + F + +G+ + +D + +G+
Sbjct: 168 GLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLT 227
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 37.7 bits (87), Expect = 0.006
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 18/138 (13%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYS--DSLGKFLPDEDRPNKGVFSLQDDDGQW 80
R+ I+ S+R +++G+ +ETP++ + + ++
Sbjct: 174 FITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELH 233
Query: 81 ISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSA 140
L R + + + Y IG VFRNE +F ++ +
Sbjct: 234 ----------LKRLIVGGLE------KVYEIGRVFRNEGISTRHNPEFTMLELYEAYADF 277
Query: 141 ETADAEMCMMMADTLEAV 158
++A V
Sbjct: 278 RDIMKLTENLIAHIATEV 295
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 37.5 bits (86), Expect = 0.007
Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 24/186 (12%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82
RI++ R + F I TP L S G E + L +
Sbjct: 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLY-- 301
Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK-HGPGRFRQFIQCDVDNVGSSAE 141
+ +F + + +GPVFR E + +F D++
Sbjct: 302 --------KQMAIMGDFR------KVFEVGPVFRAENSNTRRHLTEFEGLDIEM------ 341
Query: 142 TADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAID 201
E D +E + D ++ + + RL AI+
Sbjct: 342 -EIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRLTYKEAIE 400
Query: 202 KLDKFG 207
L G
Sbjct: 401 MLRASG 406
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.0 bits (79), Expect = 0.035
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 361 ALKSLESSTNNIK----EMGPVL-I-TTMD 384
ALK L++S +K + P L I TM+
Sbjct: 21 ALKKLQAS---LKLYADDSAPALAIKATME 47
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 33.8 bits (77), Expect = 0.088
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 13/133 (9%)
Query: 7 LRAELPR--GFADCPTKEIRIRNRILDSIRNIYENY--GFDPIETPLLE---YSDSLGKF 59
R ++ K + +S++ I Y G + +LE + +
Sbjct: 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEM 178
Query: 60 LPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNE- 118
F ++LR +T+ V++ + P + + I FR E
Sbjct: 179 GLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQ 238
Query: 119 ----KHGPGRFRQ 127
H +
Sbjct: 239 KEDKSHLMT-YHS 250
Score = 31.1 bits (70), Expect = 0.51
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNK-GVFSLQDDDGQWIS 82
N ++++R Y GF+ P++ F P E F L +
Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAVLDRCFYLAGLPRPDVG 124
Query: 83 LRYDLTAPLAR 93
L + + + +
Sbjct: 125 LSDEKISQIEK 135
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 32.3 bits (73), Expect = 0.28
Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 24/135 (17%)
Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDS-LGKFLPDEDRPNKGVFSLQDDDGQWI 81
+IR+ + ++R+ + GF I TP + + + G L + F Q
Sbjct: 137 FKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSP----- 191
Query: 82 SLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAE 141
+A D R Y I P+FR E+H R E
Sbjct: 192 ------QLYKQIMMASGLD------RVYEIAPIFRAEEHNTTRHLNEAWSIDS------E 233
Query: 142 TADAEMCMMMADTLE 156
A E + LE
Sbjct: 234 MAFIEDEEEVMSFLE 248
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 31.9 bits (71), Expect = 0.38
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 427 RNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVK 486
A+ T E ML D+ G++ + +EA + + E +
Sbjct: 232 WERVQAVCGQTKENRSSMLV--DVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLYGSI 289
Query: 487 KILQENKEEI 496
K L+ N ++
Sbjct: 290 KALERNTNKV 299
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.4 bits (70), Expect = 0.42
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 450 LAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKEE 495
+A+ L++E ++ WRE + + + EL + K + QE +E+
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKR----LQELDAASKVMEQEWREK 115
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 30.9 bits (69), Expect = 0.65
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 135 NVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGIN--NRKILDGILEKIGLHGDDKLNE 192
+S + A++ + D L + K D+ ++ IL G +GL +
Sbjct: 290 LAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGAESAMGLTPEH---- 345
Query: 193 RLIVLRAIDKLDKFG 207
+ + D+ G
Sbjct: 346 ---MRASYDRYINHG 357
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 685
Score = 30.3 bits (68), Expect = 0.95
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNK-GVFSLQD---DDGQ 79
N ++++R Y GF+ P++ F P E F L D
Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAVLDRCFYLAGLPRPDVG 124
Query: 80 WISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPV 114
+ L V+E+ +++ Y+ G +
Sbjct: 125 LSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTL 159
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 29.5 bits (65), Expect = 1.8
Identities = 17/144 (11%), Positives = 34/144 (23%), Gaps = 12/144 (8%)
Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQ 130
F++ + + SL ++ C K G
Sbjct: 27 FTVLTNSLEEKSLADMKGKVT--IISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISA 84
Query: 131 CDVDNVGSSAETADAEMCMMMAD-----TLEAVGIKRNDYHIGINNRKILD--GILEKIG 183
+ ++D EA G+ + + + +LD G +
Sbjct: 85 DLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE 144
Query: 184 LHGDDKLNERLI--VLRAIDKLDK 205
+ N + A L K
Sbjct: 145 Y-VSEATNHPNYEKPIEAAKALVK 167
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 29.6 bits (66), Expect = 1.8
Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 10/129 (7%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLE----YSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82
R ++ I +++ G++ ++ +E ++L R + F + D+
Sbjct: 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTH 115
Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142
+ + + P + G V+R + QF Q + V + +
Sbjct: 116 TSPVQARTMEKRNGQG------PVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKM 169
Query: 143 ADAEMCMMM 151
+D + + +
Sbjct: 170 SDLKGTLEL 178
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 665
Score = 29.5 bits (66), Expect = 1.9
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNK-GVFSLQDDDGQWIS 82
N ++++R Y GF+ P++ F P E F L +
Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAVLDRCFYLAGLPRPDVG 124
Query: 83 L---RYDLTAPLARYVAENFDTIVFPCRTYRIGPV 114
L + L V+E+ +++ Y+ G +
Sbjct: 125 LSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTL 159
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP:
d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A*
3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Length = 350
Score = 29.3 bits (65), Expect = 2.2
Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 19/140 (13%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLEY-SDSLGKFLPDEDRP---NKGVFSLQDDDGQW-- 80
+ + I+ G+ +E P +E + E P F L + +
Sbjct: 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEG 163
Query: 81 ---------ISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQC 131
+ LR + RY+ + P R G VFR E+ F Q
Sbjct: 164 PLGEEVEGRLLLRTHTSPMQVRYMVAHTP----PFRIVVPGRVFRFEQTDATHEAVFHQL 219
Query: 132 DVDNVGSSAETADAEMCMMM 151
+ VG A + +
Sbjct: 220 EGLVVGEGIAMAHLKGAIYE 239
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 29.2 bits (64), Expect = 2.2
Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 378 VLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGT 437
+I + + + + L G+ ++ + N G + D P A+
Sbjct: 402 AVIPLVKNRPEITEYAKRLKARLLALGLGRVLYE-DTGNIGKAYRRHDEVGTPFAVTVD- 459
Query: 438 GERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490
+ Q KD + + +++ ++ QI + + EL +++ L+
Sbjct: 460 ---YDTIGQSKDGTTRLKDTVTVRDRDTME-----QIRLHVDELEGFLRERLR 504
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, structural genomics; HET: NDP
BCN; 2.15A {Ralstonia eutropha JMP134}
Length = 318
Score = 29.1 bits (64), Expect = 2.3
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 431 LAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490
I + +S Q DLA+GK + N R I +P + ++ + ++++
Sbjct: 255 RRIAETMPRQSSSTAQ--DLARGKRSEIDHLNGLIVRRGDALGIPVPANRVLHALVRLIE 312
Query: 491 ENKE 494
+ ++
Sbjct: 313 DKQQ 316
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, PSI-2; 2.30A
{Staphylococcus aureus subsp}
Length = 294
Score = 29.2 bits (64), Expect = 2.4
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 444 MLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENK 493
M D+ + L E +R AR + P + + + + Q+N+
Sbjct: 240 MYY--DIVHQQPLEVEAIQGFIYRRAREHNLDTPYLDTIYSFLRAYQQNE 287
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 648
Score = 28.8 bits (64), Expect = 2.6
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPN 67
N ++++R Y GF+ P++ F P E
Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAV 108
>2c46_A MRNA capping enzyme; guanylyltransferase, phosphatase, transferase,
alternative splicing, hydrolase, mRNA processing,
multifunctional enzyme; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 28.7 bits (64), Expect = 2.6
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 22/104 (21%)
Query: 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPN-K 68
++P + +CP + + R L P++T L + +E+R +
Sbjct: 27 KIPPRWLNCPRRGQPVAGRFL-------------PLKTML---GPRYDSQVAEENRFHPS 70
Query: 69 GVFSLQDDDGQWISLRYDLTAPLARYVAENF-----DTIVFPCR 107
+ + + L DLT Y + I C+
Sbjct: 71 MLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCK 114
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET:
DNA; 3.10A {Homo sapiens}
Length = 459
Score = 28.9 bits (64), Expect = 3.0
Identities = 5/72 (6%), Positives = 16/72 (22%), Gaps = 8/72 (11%)
Query: 104 FPCRTYRIGPVFRNE------KHGPGRFRQFIQCD--VDNVGSSAETADAEMCMMMADTL 155
P +IG F ++G + + ++
Sbjct: 172 LPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWW 231
Query: 156 EAVGIKRNDYHI 167
+ +++
Sbjct: 232 RKFAMSPSNFSS 243
Score = 27.4 bits (60), Expect = 8.5
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 473 QITIPISELVSTVKKILQENK 493
+ + IS+L + K + K
Sbjct: 431 KEMMHISKLKDFLIKYISSAK 451
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A*
Length = 415
Score = 28.5 bits (63), Expect = 3.3
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 17/116 (14%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDD------DGQW 80
I + ++ + TPL D+L + + + D D +
Sbjct: 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDS-LLIPADHPSRKKGDNYY 109
Query: 81 IS----LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCD 132
++ LR +A + D +G V+R ++ + F Q +
Sbjct: 110 LNRTHMLRAHTSAHQWDLLHAGLD------AFLVVGDVYRRDQIDSQHYPIFHQLE 159
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four
helix bundle, DNA binding protein; 1.95A {Mus musculus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Length = 454
Score = 28.5 bits (63), Expect = 3.8
Identities = 14/119 (11%), Positives = 30/119 (25%), Gaps = 21/119 (17%)
Query: 378 VLITTMDHDSDSLSKY-QMYTQMLRTAGIRAEMFLG--SSKNFGNQLKYADRRNCPLAII 434
V + + L + Q L GI + D + +++
Sbjct: 341 VALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVL 400
Query: 435 QGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENK 493
G++Q++ + + IS+L + K L
Sbjct: 401 VTETTLENGLIQLRSRDTTM------------------KEMMHISKLRDFLVKYLASAS 441
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics,
protein structure initiative; 2.50A {Geobacter
metallireducens gs-15}
Length = 312
Score = 28.4 bits (62), Expect = 4.3
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 431 LAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490
L GE M D +G+ L I +P E+++T+ +
Sbjct: 246 LEFTDAMGEYKPSMEI--DREEGRPLEIAAIFRTPLAYGAREGIAMPRVEMLATLLEQAT 303
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose
isomerization, hydride shift; 1.60A {Escherichia coli}
SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Length = 426
Score = 28.2 bits (63), Expect = 4.8
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 1 MGKKTKLRAEL----PRGFADCPTKEIRIRNRILDSIRNIY-----ENYGFDPIETPLLE 51
G++ + + P G D + R R+L ++ + + D +E+ L
Sbjct: 179 FGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFG 238
>3drn_A Peroxiredoxin, bacterioferritin comigratory protein homolog;
oxidoreductase; HET: CIT; 2.15A {Sulfolobus
solfataricus}
Length = 161
Score = 28.1 bits (61), Expect = 5.0
Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 26/166 (15%)
Query: 56 LGKFLPDEDRPNKGVFSLQDDDGQWISLR-YDLTAPLARYVAENFDTIVFPCRTYRIGPV 114
+G P F D+G+ ISL Y + Y DT
Sbjct: 4 VGDKAPL--------FEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDN 55
Query: 115 FRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKI 174
+ K D+++ E ++ + + I
Sbjct: 56 WDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITF 115
Query: 175 L---DGILEKI-------GLHGDDKLNERLIVLRAIDKLDKFGLQG 210
+ GI+ I H ++ L+A+ ++ + +
Sbjct: 116 VIDKKGIIRHIYNSQMNPANHVNE-------ALKALKQIKEEEISL 154
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.8 bits (61), Expect = 5.3
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 432 AIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQE 491
I G+ R + E S N+ E + I LV + +
Sbjct: 185 TIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDK-DEKALPNGEAWIPNLVKAITDVATN 243
Query: 492 NKEEI 496
++ I
Sbjct: 244 QRKAI 248
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit,
structural genomics, PSI-2, protein structure
initiative; HET: TAM; 2.44A {Porphyromonas gingivalis}
Length = 213
Score = 27.8 bits (61), Expect = 5.3
Identities = 10/99 (10%), Positives = 21/99 (21%), Gaps = 2/99 (2%)
Query: 26 RNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRY 85
R + + GF+ I L + + + +R
Sbjct: 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNC--MRQ 63
Query: 86 DLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGR 124
L ++ N + G +R
Sbjct: 64 TLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTD 102
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 28.0 bits (62), Expect = 5.3
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 27 NRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPN 67
++ +R Y GF+ + P++ + K E
Sbjct: 60 METIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAV 100
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D*
1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D*
2ein_D* 2occ_D* 2zxw_D*
Length = 147
Score = 27.8 bits (62), Expect = 5.4
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 423 YADRRNCPLAIIQGTGERSRGMLQIKDLAKG--KELSREIK 461
Y DRR+ PL + S +K+ K LS + K
Sbjct: 16 YVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEK 56
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 27.6 bits (60), Expect = 7.4
Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 18/158 (11%)
Query: 57 GKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFR 116
G +PD SL ++D ISL+ +T V + P T +
Sbjct: 10 GDPIPD--------LSLLNEDNDSISLK-KITENNRVVVFFVYPRASTPGSTRQASGFRD 60
Query: 117 NEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMA-----DTLEAVGIKRNDYHIGINN 171
N + F + + + + + +G K+ I +
Sbjct: 61 NYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRS 120
Query: 172 RKIL-DGILEKIGLHGDDKLN-ERLI--VLRAIDKLDK 205
I DG L+ + +++ VL +K +
Sbjct: 121 HFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKE 158
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.138 0.393
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,249,832
Number of extensions: 203869
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 83
Length of query: 496
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 400
Effective length of database: 3,365,806
Effective search space: 1346322400
Effective search space used: 1346322400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.1 bits)