RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780929|ref|YP_003065342.1| hypothetical protein
CLIBASIA_04140 [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)



>d1regx_ d.58.27.1 (X:) Translational regulator protein regA
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 122

 Score = 27.8 bits (62), Expect = 1.9
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 309 LAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPD 356
           L +   L+R  +   K + + Q CH + K+   G   I  F      D
Sbjct: 13  LKVKETLTRMGIANNKDKVLYQSCHILQKK---GLYYIVHFKEMLRMD 57


>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase
           {Rhodococcus erythropolis [TaxId: 1833]}
          Length = 211

 Score = 27.2 bits (60), Expect = 2.7
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 166 GLMIMPFAWDGYWLASRGKVADSKVHPPKYLEYSHYYQQYLNRNTLV--KNFLSQ 218
            LM    A  G +     +    ++ P  Y+   +Y +  +   TL+  K  L+Q
Sbjct: 38  SLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPYYERYVIGVATLMVEKGILTQ 92


>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable
           domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
           10090]}
          Length = 120

 Score = 26.2 bits (57), Expect = 5.1
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 174 WDGYWLASRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSS 233
              +   S GK  +       +     Y Q++ ++ TL  +  S   Y        + S+
Sbjct: 33  LLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSA 92

Query: 234 ILYWAVGTLTYS 245
           + Y A     Y 
Sbjct: 93  VYYCAREDFRYH 104


>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 303

 Score = 25.4 bits (56), Expect = 9.2
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 218 QIPYKNFCMAPYHYSSI--LYWAV------GTLTYSVDNKTTTREYYKDPYYAT 263
            + + N    P+H  SI  LY +       G    +V      RE  +     T
Sbjct: 190 SLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGT 243


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,526,285
Number of extensions: 70103
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 11
Length of query: 408
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,213,086
Effective search space: 389400606
Effective search space used: 389400606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)