HHsearch alignment for GI: 254780930 and conserved domain: PRK11556
>PRK11556 multidrug efflux system subunit MdtA; Provisional.
Probab=95.34 E-value=0.15 Score=27.88 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999878765543234567776532223557989999998568888768776
Q gi|254780930|r 179 QILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTL 236 (452)
Q Consensus 179 ~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l 236 (452)
T Consensus 139 A~l~~A~~~~~R~~~L~~~~~iS~~~ld~~~a~~~~A~A~l~~a~a~l~~A~~~L~~t 196 (415)
T PRK11556 139 ATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEAAVASAQLQLDWS 196 (415)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999998765995699999899999999999999999999998752488