HHsearch alignment for GI: 254780930 and conserved domain: TIGR03007
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; InterPro: IPR014345 Members of this entry belong to the family of polysaccharide chain length determinant proteins. They are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the epsH homologue that is the putative exosortase gene..
Probab=91.93 E-value=0.77 Score=23.25 Aligned_cols=218 Identities=12% Similarity=0.100 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 677788999999999999999987876554323-----456777653222355798999999856888876877639992
Q gi|254780930|r 167 ARHFKERISIAHQILDLYKKNIELSHLKFTQGA-----TSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPA 241 (452)
Q Consensus 167 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~-----~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~ 241 (452)
T Consensus 163 ~rFi~~Qik~Y~~kL~~aE~~L~~FK~~~~~~lp~~~~~y~~~l~~~~~~L~~~~l~~~e~~~~Rd~l~rQL~---g~~P 239 (510)
T TIGR03007 163 QRFIDEQIKEYEKKLEAAENRLKAFKQENGGILPDQEGDYYSELSEAQEELEAARLELNEAKAQRDALKRQLA---GEEP 239 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCC
T ss_conf 9999999999999999999999987687345377973789999999999999999999988876788751458---8661
Q ss_pred HHHCCCCC-CCCCCCCCCHHHHH---CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13000123-45544331001221---048---878997302345565558999964301011222210011222211223
Q gi|254780930|r 242 TEFLHYMQ-KQSNNFQPNLYIPI---NIG---IPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHD 314 (452)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~---~~~---~~~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~ 314 (452)
T Consensus 240 v~~~~~g~~~~~s~~~~~~~~Ri~~L~~~Ld~L~l~YTd~HPdv~~~k~~Ia~L~~~~~~e~~~~~~Q-----~~~~~~~ 314 (510)
T TIGR03007 240 VLLAGSGEKSASSVANSELDSRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEELESYRKQ-----NGEGGGS 314 (510)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCC
T ss_conf 56236888665312356256899999999998633630115589999999999999988999889873-----0345555
Q ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44544541044311223451012456656779999999999999999999999999999999999999999999999999
Q gi|254780930|r 315 NSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHK 394 (452)
Q Consensus 315 ~~~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~ 394 (452)
T Consensus 315 ~~~~~~-----------nPvyQ--ql~~~l~~~eA~~asl~~r~~~~-~~~~~~l~~~~~~iP~veaEl~~L~rdy~~~k 380 (510)
T TIGR03007 315 EKGSIY-----------NPVYQ--QLQIELAEAEAEIASLEARVAEL-TARIERLESLLRTIPEVEAELTQLNRDYEVNK 380 (510)
T ss_pred CCCCCC-----------CCHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 566789-----------83137--78999999999999999999999-99999999997532799999999998875558
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999871
Q gi|254780930|r 395 KSMSLSMINYRQ 406 (452)
Q Consensus 395 ~~~~~~~~~y~~ 406 (452)
T Consensus 381 ~~Ye~Ll~R~e~ 392 (510)
T TIGR03007 381 SNYEQLLARRES 392 (510)
T ss_pred HHHHHHHHHHHH
T ss_conf 889999988985