HHsearch alignment of GI: 254780930 and MMDB domain: 1yc9_A_1-69_115-283

>1yc9_A (A:1-69,A:115-283) VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=99.97  E-value=2.1e-28  Score=202.94  Aligned_cols=219  Identities=19%  Similarity=0.339  Sum_probs=193.8

Q ss_pred             CCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             67686234366099879999999997089989999999999999998754205301110112456655544444321110
Q gi|254780930|r   45 INIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDW  124 (452)
Q Consensus        45 ~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~  124 (452)
                      ..++..+||+.|+||.|+.+|+.|+.+||+|.+|..+++.|++....+++                              
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   68 (238)
T 1yc9_A           19 MDWPSANWWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGA------------------------------   68 (238)
T ss_dssp             --CCCTTGGGGGCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHG------------------------------
T ss_pred             CCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC------------------------------
T ss_conf             79981679876698889999999996399999999999999999999647------------------------------


Q ss_pred             CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             110012345-7788887776555679999999999999876666777889999999999999999878765543234567
Q gi|254780930|r  125 KIDLFGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKL  203 (452)
Q Consensus       125 ~ldl~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~  203 (452)
                         .||+++ .++.+....+.++.+++.++.++..+|.++|++++..++.+++.++.++..++.++.++.+++.|.++..
T Consensus        69 ---~~Gk~~a~~~~A~~~~~~a~~~~~~~~~~l~~~v~~aY~~ll~~q~~l~i~~~~l~~~~~~~~~~~~r~~~G~~s~~  145 (238)
T 1yc9_A           69 ---IWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLG  145 (238)
T ss_dssp             ---GTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---47777788999999999999999999999999999999999999888999999999999999999988642101233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             77653222355798999999856888876877639992130001234554433100122104887899730234556555
Q gi|254780930|r  204 SLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEK  283 (452)
Q Consensus       204 d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~  283 (452)
                      |+.+++.++..++..+..++.++..++..|..++|.++.............+.+   .+....++..++.+||||+.++.
T Consensus       146 Dl~~aq~~l~~a~~~l~~ae~~~~~a~~~L~~LlG~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~al~~rPdl~~a~~  222 (238)
T 1yc9_A          146 SVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQGPDRAASIEEPHITLTSR---YGLPSEAGVGLLGHRADITAARW  222 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCCCCCCCCCCC---C-------CGGGTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHCCHHHHHHH
T ss_conf             556554444346668999999999999889998477874112345543222344---46806667778862100224677


Q ss_pred             HHHHHHHHHCCHHHHH
Q ss_conf             8999964301011222
Q gi|254780930|r  284 KLADSVAKIGIAKSDL  299 (452)
Q Consensus       284 ~~~~a~~~i~~a~a~~  299 (452)
                      ++++++.+++.++++|
T Consensus       223 ~i~aa~~~i~~aka~y  238 (238)
T 1yc9_A          223 RAEAAAQQVGIAQAQF  238 (238)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             8999998676777631