Query gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs 237 out of 6667
Neff 9.6
Searched_HMMs 33803
Date Wed Jun 1 21:03:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780930.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1yc9_A VCEC, multidrug resist 100.0 2.1E-28 6.4E-33 202.9 24.6 219 45-299 19-238 (238)
2 >3d5k_A OPRM, outer membrane p 99.9 1.1E-23 3.3E-28 172.1 23.2 210 56-299 1-211 (211)
3 >1yc9_A VCEC, multidrug resist 99.7 9E-16 2.7E-20 120.4 18.1 117 336-452 1-117 (120)
4 >3d5k_A OPRM, outer membrane p 99.7 1.4E-14 4E-19 112.7 17.7 114 336-449 1-114 (114)
5 >1ek9_A Outer membrane protein 99.6 2.1E-14 6.2E-19 111.5 16.5 178 61-277 3-181 (181)
6 >1ek9_A Outer membrane protein 99.6 1.2E-13 3.6E-18 106.5 17.7 111 337-447 42-152 (153)
7 >1yc9_A VCEC, multidrug resist 99.3 1.2E-09 3.7E-14 80.3 20.1 144 268-449 39-182 (238)
8 >3d5k_A OPRM, outer membrane p 99.3 1.6E-09 4.6E-14 79.7 20.4 148 270-452 12-159 (211)
9 >1ek9_A Outer membrane protein 99.2 1.2E-08 3.5E-13 73.9 19.8 146 61-239 7-153 (153)
10 >1yc9_A VCEC, multidrug resist 99.2 2.5E-09 7.4E-14 78.3 14.3 115 129-243 2-117 (120)
11 >3d5k_A OPRM, outer membrane p 99.1 2.6E-09 7.7E-14 78.2 14.1 111 129-239 2-113 (114)
12 >1ek9_A Outer membrane protein 99.0 1.7E-07 5.1E-12 66.3 17.9 116 336-451 33-148 (181)
13 >1yc9_A VCEC, multidrug resist 97.2 0.0001 3E-09 48.2 1.5 39 297-335 43-84 (84)
14 >3d5k_A OPRM, outer membrane p 96.8 0.00038 1.1E-08 44.4 1.2 36 300-335 43-81 (81)
15 >1ek9_A Outer membrane protein 84.3 0.34 1E-05 25.2 0.9 47 290-336 35-94 (94)
16 >2f1m_A Acriflavine resistance 77.8 3.5 0.0001 18.5 8.7 74 168-241 43-116 (146)
17 >2vx5_A Cellvibrio japonicus m 57.5 3.4 0.0001 18.6 0.7 13 1-13 1-13 (396)
18 >2w7y_A FCSSBP, probable sugar 56.0 4.8 0.00014 17.6 1.2 18 60-77 58-75 (185)
19 >3fpp_A Macrolide-specific eff 52.1 11 0.00033 15.2 11.3 71 167-237 49-119 (161)
20 >3k6v_A Solute-binding protein 49.4 2.2 6.4E-05 19.9 -1.4 47 60-106 56-102 (185)
21 >3c9h_A ABC transporter, subst 48.3 2.3 6.9E-05 19.7 -1.4 62 1-79 1-65 (355)
22 >3bxw_B Chitinase domain-conta 36.9 13 0.00039 14.8 1.0 24 1-24 1-25 (128)
23 >3dw0_A Class A carbapenemase 36.6 8.9 0.00026 15.9 0.1 19 1-19 1-19 (294)
24 >2f2f_C CDT C, cytolethal dist 26.2 27 0.00081 12.7 1.2 19 5-23 3-21 (186)
25 >2w5v_A Alkaline phosphatase; 25.0 19 0.00057 13.7 0.2 20 1-20 1-20 (342)
26 >3e4r_A Nitrate transport prot 22.9 27 0.0008 12.7 0.6 19 1-19 1-20 (181)
No 1
>>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:1-69,A:115-283)
Probab=99.97 E-value=2.1e-28 Score=202.94 Aligned_cols=219 Identities=19% Similarity=0.339 Sum_probs=193.8
Q ss_pred CCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67686234366099879999999997089989999999999999998754205301110112456655544444321110
Q gi|254780930|r 45 INIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDW 124 (452)
Q Consensus 45 ~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~ 124 (452)
..++..+||+.|+||.|+.+|+.|+.+||+|.+|..+++.|++....+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 68 (238)
T 1yc9_A 19 MDWPSANWWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGA------------------------------ 68 (238)
T ss_dssp --CCCTTGGGGGCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHG------------------------------
T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC------------------------------
T ss_conf 79981679876698889999999996399999999999999999999647------------------------------
Q ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110012345-7788887776555679999999999999876666777889999999999999999878765543234567
Q gi|254780930|r 125 KIDLFGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKL 203 (452)
Q Consensus 125 ~ldl~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~ 203 (452)
.||+++ .++.+....+.++.+++.++.++..+|.++|++++..++.+++.++.++..++.++.++.+++.|.++..
T Consensus 69 ---~~Gk~~a~~~~A~~~~~~a~~~~~~~~~~l~~~v~~aY~~ll~~q~~l~i~~~~l~~~~~~~~~~~~r~~~G~~s~~ 145 (238)
T 1yc9_A 69 ---IWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLG 145 (238)
T ss_dssp ---GTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---47777788999999999999999999999999999999999999888999999999999999999988642101233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 77653222355798999999856888876877639992130001234554433100122104887899730234556555
Q gi|254780930|r 204 SLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEK 283 (452)
Q Consensus 204 d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~ 283 (452)
|+.+++.++..++..+..++.++..++..|..++|.++.............+.+ .+....++..++.+||||+.++.
T Consensus 146 Dl~~aq~~l~~a~~~l~~ae~~~~~a~~~L~~LlG~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~al~~rPdl~~a~~ 222 (238)
T 1yc9_A 146 SVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQGPDRAASIEEPHITLTSR---YGLPSEAGVGLLGHRADITAARW 222 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCCCCCCCCCCC---C-------CGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHCCHHHHHHH
T ss_conf 556554444346668999999999999889998477874112345543222344---46806667778862100224677
Q ss_pred HHHHHHHHHCCHHHHH
Q ss_conf 8999964301011222
Q gi|254780930|r 284 KLADSVAKIGIAKSDL 299 (452)
Q Consensus 284 ~~~~a~~~i~~a~a~~ 299 (452)
++++++.+++.++++|
T Consensus 223 ~i~aa~~~i~~aka~y 238 (238)
T 1yc9_A 223 RAEAAAQQVGIAQAQF 238 (238)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999998676777631
No 2
>>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:44-85,A:128-296)
Probab=99.93 E-value=1.1e-23 Score=172.12 Aligned_cols=210 Identities=22% Similarity=0.372 Sum_probs=186.6
Q ss_pred HCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-H
Q ss_conf 099879999999997089989999999999999998754205301110112456655544444321110110012345-7
Q gi|254780930|r 56 FNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-H 134 (452)
Q Consensus 56 ~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~~ldl~G~~~-~ 134 (452)
|.||+|.++|-.|++||.|++.+...+++.++++...++.+ .+||+++ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~Gk~~~~ 50 (211)
T 3d5k_A 1 FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADL------------------------------FLFGRLRSL 50 (211)
T ss_dssp BCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTT------------------------------STTSHHHHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC------------------------------CHHHHHHHH
T ss_conf 59888999999999709999999999999999999974330------------------------------845667776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78888777655567999999999999987666677788999999999999999987876554323456777653222355
Q gi|254780930|r 135 IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKS 214 (452)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~ 214 (452)
++.+....+.++.++..++.+++.+|.++||+++.+++.+++.++.++..++.++.++.+++.|.++..|+.+++.++.+
T Consensus 51 ~~~A~~~~~~a~~~~~~~~~~l~~eV~~aY~~ll~aq~~l~~~~~~l~~~~~~l~~~~~r~~~G~~s~~D~~~aq~~l~~ 130 (211)
T 3d5k_A 51 RDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEG 130 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 66788889998999999999999999999999999888899999999999999887520102885200001478899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79899999985688887687763999213000123455443310012210488789973023455655589999643010
Q gi|254780930|r 215 IESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGI 294 (452)
Q Consensus 215 ~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~~~~~a~~~i~~ 294 (452)
.+.++..++.++..++..|..++|.|++............ ...+....+...++.+||||+.++.+++.+..+++.
T Consensus 131 ~~~~l~~a~~~~~~a~~~L~~LlG~~~~~~~~~~~~~~~~----~~~~~~~~~~~~al~~rPdl~~a~~~i~~a~~~v~~ 206 (211)
T 3d5k_A 131 ARATLAQYTRLVAQDQNALVLLLGSGIPANLPQGLGLDQT----LLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGA 206 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCCCCCTTSC----CBCCCCCCCGGGHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 8889999999899999999998389986321000122234----687784467999998520001259999999999999
Q ss_pred HHHHH
Q ss_conf 11222
Q gi|254780930|r 295 AKSDL 299 (452)
Q Consensus 295 a~a~~ 299 (452)
+|++|
T Consensus 207 aka~y 211 (211)
T 3d5k_A 207 ARAAF 211 (211)
T ss_dssp HHTTS
T ss_pred HHHHH
T ss_conf 99764
No 3
>>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:323-442)
Probab=99.73 E-value=9e-16 Score=120.43 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 12456656779999999999999999999999999999999999999999999999999999999999871883289999
Q gi|254780930|r 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415 (452)
Q Consensus 336 ~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll 415 (452)
+||+++++++.++...+.+..+++++..++..+|.++|.++..+.+++...++.++.+++.++..+.+|+.|.++.+|++
T Consensus 1 sGG~~~~~v~~a~~~~~~a~~~~~~~~~~i~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~~~~d~l 80 (120)
T 1yc9_A 1 TGGRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVL 80 (120)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 14751015999999999999999999999999999999999999999999999999999999999999987996199999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999999999999999984999998
Q gi|254780930|r 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 (452)
Q Consensus 416 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg~~~ 452 (452)
+++..+.+++.+++++++++..+.+.|.+++||||++
T Consensus 81 ~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~Gg~~~~ 117 (120)
T 1yc9_A 81 VAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999999999999999982799898
No 4
>>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:336-449)
Probab=99.67 E-value=1.4e-14 Score=112.75 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 12456656779999999999999999999999999999999999999999999999999999999999871883289999
Q gi|254780930|r 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415 (452)
Q Consensus 336 ~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll 415 (452)
+||+++++++.+++..+++..+++.+.+++..+|.+++..+..+.+++..+++.++.+++.++.++.+|+.|.++.+||+
T Consensus 1 ngg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~s~~dll 80 (114)
T 3d5k_A 1 TAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLL 80 (114)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 00002225788999999999999999999999999999999999999999999999999999999999986986099999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999999999984999
Q gi|254780930|r 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSG 449 (452)
Q Consensus 416 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg 449 (452)
++++++.+++.+++++++++..+.+.|.+++|||
T Consensus 81 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~Ggg 114 (114)
T 3d5k_A 81 DAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGG 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999999999971799
No 5
>>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:1-34,A:78-202,A:407-428)
Probab=99.65 E-value=2.1e-14 Score=111.50 Aligned_cols=178 Identities=10% Similarity=0.087 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHH
Q ss_conf 9999999997089989999999999999998754205301110112456655544444321110110012345-778888
Q gi|254780930|r 61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-HIESSL 139 (452)
Q Consensus 61 L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~~ldl~G~~~-~~~~a~ 139 (452)
|.+.-+.+--.||+++.+..+-..+-..+.. .|+++ .++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~krr~~i~~A~ 45 (181)
T 1ek9_A 3 LXQVYQQARLSNPELRKSAADRDAAFEKINE-------------------------------------AXSKWRALTLQE 45 (181)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-------------------------------------HCCHHHHHHHHH
T ss_conf 8999999997299999999999999999999-------------------------------------770589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77765556799999999999998766667778899999999999999998787655432345677765322235579899
Q gi|254780930|r 140 ANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDI 219 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l 219 (452)
...++++++++.++.+++.+|+.+||+++.+++.+++.+++++..++.++.++.+++.|.++..|+.+++.++..++..+
T Consensus 46 ~~~~~a~~~~~~~~~~l~~~v~~aY~~l~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~G~~s~~dl~~a~a~~~~~~~~l 125 (181)
T 1ek9_A 46 KAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANE 125 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999998758886879999987899999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999856888876877639992130001234554433100122104887899730234
Q gi|254780930|r 220 PTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPD 277 (452)
Q Consensus 220 ~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPd 277 (452)
..++.++..+...|..++|.++.............+ ....+....++..++.+||+
T Consensus 126 ~~a~~~~~~a~~~L~~llg~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~Al~nRPE 181 (181)
T 1ek9_A 126 LTARNNLDNAVEQLRQITGNYYPELAALNVENFKLN--EQDLLALNNALSKPVSTNPE 181 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSEEEEECTTTCCCC--HHHHHHHHHTEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999999872898410123574212399--88999999864699899988
No 6
>>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:203-243,A:295-406)
Probab=99.62 E-value=1.2e-13 Score=106.53 Aligned_cols=111 Identities=16% Similarity=0.272 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 24566567799999999999999999999999999999999999999999999999999999999998718832899999
Q gi|254780930|r 337 KGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILD 416 (452)
Q Consensus 337 gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~ 416 (452)
||+++++++.+++.++.+..+++.+.+.+..+|.++|..+....+++..+++.+..+++.++.++.+|+.|.++.+||++
T Consensus 42 GG~~~a~v~~Aka~~~~a~~~~~~~~~~i~~eV~~A~~~l~~a~~~l~~~~~~i~~A~~~~~~~~~rY~~G~~t~~Dll~ 121 (153)
T 1ek9_A 42 GGXVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAXEAGYSVGTRTIVDVLD 121 (153)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 14477899999999999999999999999999999999999999999999999999999999999999869960999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999849
Q gi|254780930|r 417 IERATAKVEVDLSIAKRQLAKSYVDLYIAIG 447 (452)
Q Consensus 417 a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlG 447 (452)
++..+++++.+++++++++..+.+.|++++|
T Consensus 122 Aq~~l~~Aq~~l~~A~~~~~~a~~~L~~a~G 152 (153)
T 1ek9_A 122 ATTTLYNAKQELANARYNYLINQLNIKSALG 152 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999999868
No 7
>>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:1-69,A:115-283)
Probab=99.33 E-value=1.2e-09 Score=80.33 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 78997302345565558999964301011222210011222211223445445410443112234510124566567799
Q gi|254780930|r 268 PADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRA 347 (452)
Q Consensus 268 ~~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~~~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a 347 (452)
-.++|.+.|++..++.+++.+......+.+. ||++++.++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~Gk~~a~~~~A 80 (238)
T 1yc9_A 39 IEEALQHSPSLCMAMARLKGAQGFARQAGAI--------------------------------------WGKNRAAVVAA 80 (238)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHGG--------------------------------------TSHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC--------------------------------------HHHHHHHHHHH
T ss_conf 9999963999999999999999999996474--------------------------------------77777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999871883289999999999999999
Q gi|254780930|r 348 ESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVD 427 (452)
Q Consensus 348 ~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~ 427 (452)
+...+.+..+++.+..++..+|..+|.++....+.+...+..+...++.++..+.+|+.|.++..|++.++..+.+++..
T Consensus 81 ~~~~~~a~~~~~~~~~~l~~~v~~aY~~ll~~q~~l~i~~~~l~~~~~~~~~~~~r~~~G~~s~~Dl~~aq~~l~~a~~~ 160 (238)
T 1yc9_A 81 TSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAE 160 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999888999999999999999999988642101233556554444346668
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999984999
Q gi|254780930|r 428 LSIAKRQLAKSYVDLYIAIGSG 449 (452)
Q Consensus 428 ~~~a~~~~~~a~~~L~~AlGGg 449 (452)
+..++.++..+...|...+|-.
T Consensus 161 l~~ae~~~~~a~~~L~~LlG~~ 182 (238)
T 1yc9_A 161 LLGIQESIQLQKNALAALVGQG 182 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999998899984778
No 8
>>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:44-85,A:128-296)
Probab=99.32 E-value=1.6e-09 Score=79.67 Aligned_cols=148 Identities=19% Similarity=0.223 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99730234556555899996430101122221001122221122344544541044311223451012456656779999
Q gi|254780930|r 270 DLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAES 349 (452)
Q Consensus 270 ~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~~~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~ 349 (452)
-+++++-|++.+-..+++-.+++++.++ .+|+||++.+.++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~Gk~~~~~~~A~~ 56 (211)
T 3d5k_A 12 VALENNRDLRVAALNVEAFRAQYRIQRA-----------------------------------DLFLFGRLRSLRDQALE 56 (211)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHH-----------------------------------TTSTTSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHH-----------------------------------CCCHHHHHHHHHHHHHH
T ss_conf 9997099999999999999999999743-----------------------------------30845667776667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999987188328999999999999999999
Q gi|254780930|r 350 SAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDLS 429 (452)
Q Consensus 350 ~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~ 429 (452)
..+.+..+++.+..++..+|.++|.++....+.+...++.+...++.++.++.+|+.|.++..|+..++..+.+.+..+.
T Consensus 57 ~~~~a~~~~~~~~~~l~~eV~~aY~~ll~aq~~l~~~~~~l~~~~~~l~~~~~r~~~G~~s~~D~~~aq~~l~~~~~~l~ 136 (211)
T 3d5k_A 57 QYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLA 136 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89998999999999999999999999999888899999999999999887520102885200001478899999888999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999984999998
Q gi|254780930|r 430 IAKRQLAKSYVDLYIAIGSGYNP 452 (452)
Q Consensus 430 ~a~~~~~~a~~~L~~AlGGg~~~ 452 (452)
.++.++..+...|...+|...++
T Consensus 137 ~a~~~~~~a~~~L~~LlG~~~~~ 159 (211)
T 3d5k_A 137 QYTRLVAQDQNALVLLLGSGIPA 159 (211)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998999999999983899863
No 9
>>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:203-243,A:295-406)
Probab=99.20 E-value=1.2e-08 Score=73.92 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHH
Q ss_conf 9999999997089989999999999999998754205301110112456655544444321110110012345-778888
Q gi|254780930|r 61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-HIESSL 139 (452)
Q Consensus 61 L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~~ldl~G~~~-~~~~a~ 139 (452)
.+.++..|-+.|.++..++..-..++.++..+.. -+|+++ .++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~GG~~~a~v~~Ak 53 (153)
T 1ek9_A 7 VNALLKEAEKRNLSLLQARLSQDLAREQIRQAQD---------------------------------GGGXVNSQVKQAQ 53 (153)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHG---------------------------------GTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHH
T ss_conf 2379999986699999999999999999999877---------------------------------0144778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77765556799999999999998766667778899999999999999998787655432345677765322235579899
Q gi|254780930|r 140 ANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDI 219 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l 219 (452)
..++.++..++.++..+..+|..+|.++....+.+.+.++.++.+++.+++.+.+|+.|.++..|++.++..+.+++..+
T Consensus 54 a~~~~a~~~~~~~~~~i~~eV~~A~~~l~~a~~~l~~~~~~i~~A~~~~~~~~~rY~~G~~t~~Dll~Aq~~l~~Aq~~l 133 (153)
T 1ek9_A 54 YNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAXEAGYSVGTRTIVDVLDATTTLYNAKQEL 133 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999869960999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998568888768776399
Q gi|254780930|r 220 PTLEKSFRMNVHNISTLLGY 239 (452)
Q Consensus 220 ~~~~~~~~~a~~~L~~l~G~ 239 (452)
..++.++..+...|..++|.
T Consensus 134 ~~A~~~~~~a~~~L~~a~GT 153 (153)
T 1ek9_A 134 ANARYNYLINQLNIKSALGT 153 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999998689
No 10
>>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:323-442)
Probab=99.15 E-value=2.5e-09 Score=78.31 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=108.3
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12345-77888877765556799999999999998766667778899999999999999998787655432345677765
Q gi|254780930|r 129 FGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVK 207 (452)
Q Consensus 129 ~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~ 207 (452)
+|+.+ .++.+....+.++.+++.++.++..+|..+|.++..+.+.+.+.++.++..++.++.++.+|+.|.++..|++.
T Consensus 2 GG~~~~~v~~a~~~~~~a~~~~~~~~~~i~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~~~~d~l~ 81 (120)
T 1yc9_A 2 GGRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVLV 81 (120)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 47510159999999999999999999999999999999999999999999999999999999999999879961999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 322235579899999985688887687763999213
Q gi|254780930|r 208 LEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATE 243 (452)
Q Consensus 208 a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~ 243 (452)
++.++.+++..+.+++.++..+...|..++|.+.+.
T Consensus 82 a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~Gg~~~~ 117 (120)
T 1yc9_A 82 AEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999999999999982799898
No 11
>>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:336-449)
Probab=99.14 E-value=2.6e-09 Score=78.22 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=106.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12345-77888877765556799999999999998766667778899999999999999998787655432345677765
Q gi|254780930|r 129 FGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVK 207 (452)
Q Consensus 129 ~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~ 207 (452)
||+++ .++.++...+.++.+++.++.++..+|..+|+++..+.+.+.+.++.++..++.++.++.+|+.|.++..|++.
T Consensus 2 gg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~s~~dll~ 81 (114)
T 3d5k_A 2 AGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLLD 81 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 00022257889999999999999999999999999999999999999999999999999999999999869860999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 32223557989999998568888768776399
Q gi|254780930|r 208 LEAEIKSIESDIPTLEKSFRMNVHNISTLLGY 239 (452)
Q Consensus 208 a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~ 239 (452)
++..+.+++..+.+++.++..++..|..++|.
T Consensus 82 a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~Gg 113 (114)
T 3d5k_A 82 AQRSLFTAQQQLITDRLNQLTSEVNLYKALGG 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999997179
No 12
>>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:1-34,A:78-202,A:407-428)
Probab=98.98 E-value=1.7e-07 Score=66.31 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 12456656779999999999999999999999999999999999999999999999999999999999871883289999
Q gi|254780930|r 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415 (452)
Q Consensus 336 ~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll 415 (452)
..|+++..++.++...+.+..+++.+..++..+|..+|.++..+.+.+...++.+...++.++..+.+|+.|..+..|+.
T Consensus 33 ~~~krr~~i~~A~~~~~~a~~~~~~~~~~l~~~v~~aY~~l~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~G~~s~~dl~ 112 (181)
T 1ek9_A 33 EAXSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQ 112 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 97705899999999999999999999999999999999999999999999999999999999999999875888687999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999999999999998499999
Q gi|254780930|r 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYN 451 (452)
Q Consensus 416 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg~~ 451 (452)
.++..+..++.++..++.++..+...|...+|...+
T Consensus 113 ~a~a~~~~~~~~l~~a~~~~~~a~~~L~~llg~~~~ 148 (181)
T 1ek9_A 113 NARAQYDTVLANELTARNNLDNAVEQLRQITGNYYP 148 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 998789999999999999999999999987289841
No 13
>>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:70-114,A:284-322)
Probab=97.25 E-value=0.0001 Score=48.22 Aligned_cols=39 Identities=36% Similarity=0.708 Sum_probs=34.3
Q ss_pred HHHHHHCCCCCCCCCCC---CCCCCCCCCEEEEECCCCCCCC
Q ss_conf 22221001122221122---3445445410443112234510
Q gi|254780930|r 297 SDLYPSLSLNGSIALTH---DNSFPGYNTHWSFGPKLYLPIF 335 (452)
Q Consensus 297 a~~~P~i~l~~~~~~~~---~~~~~~~~~~~~~g~~l~~Pif 335 (452)
-++||+|+|+|++|+.+ .+++...+..|++|++++||||
T Consensus 43 ~~~YPsISLTGslGfeS~~ls~LFss~S~~WSIGPSLSlPIF 84 (84)
T 1yc9_A 43 FDFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLF 84 (84)
T ss_dssp CCTSCEEEEEEEEEEEEESGGGTTSTTCEEEEEEEEEECCCC
T ss_pred HHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 237134210110365554422224565321002431122211
No 14
>>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:86-127,A:297-335)
Probab=96.81 E-value=0.00038 Score=44.44 Aligned_cols=36 Identities=33% Similarity=0.689 Sum_probs=32.3
Q ss_pred HHHCCCCCCCCCCC---CCCCCCCCCEEEEECCCCCCCC
Q ss_conf 21001122221122---3445445410443112234510
Q gi|254780930|r 300 YPSLSLNGSIALTH---DNSFPGYNTHWSFGPKLYLPIF 335 (452)
Q Consensus 300 ~P~i~l~~~~~~~~---~~~~~~~~~~~~~g~~l~~Pif 335 (452)
||+|+|+|++|+.. .+++...+..|++|+++++|||
T Consensus 43 yP~isLtg~~G~~s~~~~~Lf~~~s~~Wsigp~it~PIF 81 (81)
T 3d5k_A 43 FPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIF 81 (81)
T ss_dssp SCEEEEEEEEEEEESSSTTSSSTTCEEEEEEEEEEEEEE
T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 026203230365544543112566554201000023200
No 15
>>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:35-77,A:244-294)
Probab=84.31 E-value=0.34 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHCCHHHHHHHHCCCCCCCCCCCCCCC-------------CCCCCEEEEECCCCCCCCH
Q ss_conf 4301011222210011222211223445-------------4454104431122345101
Q gi|254780930|r 290 AKIGIAKSDLYPSLSLNGSIALTHDNSF-------------PGYNTHWSFGPKLYLPIFD 336 (452)
Q Consensus 290 ~~i~~a~a~~~P~i~l~~~~~~~~~~~~-------------~~~~~~~~~g~~l~~Pif~ 336 (452)
.++....-+++|+|+|+++-+....... +.....-.+|+++++||+.
T Consensus 35 LqLTQTiFDhmPTl~LtASTgvsnt~y~Gs~~~~~~~~~~~ds~~GqN~VGLsfslPLYq 94 (94)
T 1ek9_A 35 LQLTQSIFDHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNXGQNKVGLSFSLPIYQ 94 (94)
T ss_dssp EEEEEEEECGSCEEEEEEEEEEECCEEESTTSSSSCCSTTSCCCCEEEEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCH
T ss_conf 999998526189878753114246554555556754445565555433788998641111
No 16
>>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} (A:21-166)
Probab=77.81 E-value=3.5 Score=18.51 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 77788999999999999999987876554323456777653222355798999999856888876877639992
Q gi|254780930|r 168 RHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPA 241 (452)
Q Consensus 168 ~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~ 241 (452)
..++..+..++..++..+..+...+..++.|..+..++..++..+...+.++..++..+..+...+....=..|
T Consensus 43 ~~~~a~l~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~i~AP 116 (146)
T 2f1m_A 43 DSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSP 116 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCS
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 55432012221113321102478887643364321003334222022310012333122344432100210200
No 17
>>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:)
Probab=57.55 E-value=3.4 Score=18.59 Aligned_cols=13 Identities=15% Similarity=-0.069 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9306999999999
Q gi|254780930|r 1 MNILRAIFSLFIV 13 (452)
Q Consensus 1 M~~~~~~~~l~~~ 13 (452)
|+++|.+++++++
T Consensus 1 M~~~k~~~~~~~~ 13 (396)
T 2vx5_A 1 MSEKPAESAAAVA 13 (396)
T ss_dssp -------------
T ss_pred CCCCHHHHHHHHH
T ss_conf 9966256677776
No 18
>>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349)
Probab=56.01 E-value=4.8 Score=17.64 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHCHHHHH
Q ss_conf 799999999970899899
Q gi|254780930|r 60 SLNKLVKIALQQNLTILQ 77 (452)
Q Consensus 60 ~L~~~i~~Al~~np~l~~ 77 (452)
.++++++.-.+.||+++.
T Consensus 58 ~~~~~i~~f~ke~p~IkV 75 (185)
T 2w7y_A 58 TXRDLYDKFAEEHKDSGV 75 (185)
T ss_dssp HHHHHHHHHHHHC--CCS
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 999999999998869379
No 19
>>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} (A:30-190)
Probab=52.15 E-value=11 Score=15.23 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 67778899999999999999998787655432345677765322235579899999985688887687763
Q gi|254780930|r 167 ARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLL 237 (452)
Q Consensus 167 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~ 237 (452)
+..++..+.-....+...+.........++.|..+..++..++..+...+..+..++.....+...+..+-
T Consensus 49 l~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (161)
T 3fpp_A 49 LMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAK 119 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHCCCCCCCCCCCHHCCCCCCCCCCCHHCCCCCCHHHHCCCCCHHHHCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 10000112222211000222221012011037541112100010000001121000000000122232110
No 20
>>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354)
Probab=49.41 E-value=2.2 Score=19.91 Aligned_cols=47 Identities=13% Similarity=-0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
Q ss_conf 79999999997089989999999999999998754205301110112
Q gi|254780930|r 60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISH 106 (452)
Q Consensus 60 ~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~ 106 (452)
.+++++..--+.||+++.-.......+..-....++-.|.+-...+.
T Consensus 56 ~~~~i~~~Fek~~p~IkV~~~~~~s~~~~~~i~a~g~~pDV~~~~~~ 102 (185)
T 3k6v_A 56 PFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 102 (185)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEECCH
T ss_conf 99999999999884918999968819999999967999878998999
No 21
>>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=48.34 E-value=2.3 Score=19.69 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHH
Q ss_conf 9306999999999---9975026899999995647501024677666676862343660998799999999970899899
Q gi|254780930|r 1 MNILRAIFSLFIV---LLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTSLNKLVKIALQQNLTILQ 77 (452)
Q Consensus 1 M~~~~~~~~l~~~---~l~gC~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~ 77 (452)
||.+..+++++++ +|+||+.+..... ......+.+|..-.+..++++++.--+.||+++.
T Consensus 1 Mkk~~~~~~~~~~~~~~la~c~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~F~~~~p~i~V 63 (355)
T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALSG-----------------KTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAV 63 (355)
T ss_dssp ---------------CEEEEEEEECCTTC---------------------CEEEEEECSCHHHHHHHHHHHHHHCTTCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------------CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 93699999999999999999874333356-----------------7779979999698878999999999987899279
Q ss_pred HH
Q ss_conf 99
Q gi|254780930|r 78 AT 79 (452)
Q Consensus 78 a~ 79 (452)
-.
T Consensus 64 ~~ 65 (355)
T 3c9h_A 64 HY 65 (355)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 22
>>3bxw_B Chitinase domain-containing protein 1; TIM barrel, alternative splicing, lysosome, polymorphism, secreted, hydrolase; 2.70A {Homo sapiens} (B:1-71,B:302-358)
Probab=36.91 E-value=13 Score=14.80 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHH-HHHHHHCCCCCC
Q ss_conf 930699999999-999750268999
Q gi|254780930|r 1 MNILRAIFSLFI-VLLAGCTVGPEY 24 (452)
Q Consensus 1 M~~~~~~~~l~~-~~l~gC~~~p~~ 24 (452)
|+++..++++.+ +-++.|++.|.-
T Consensus 1 m~~~~~~l~l~~~~~~~~~TLs~~d 25 (128)
T 3bxw_B 1 MRTLFNLLWLALACSPVHTTLSKSD 25 (128)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHHHHHHHHHCEECCCC
T ss_conf 9327889999999987412756554
No 23
>>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} (A:)
Probab=36.65 E-value=8.9 Score=15.90 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHHHHHC
Q ss_conf 9306999999999997502
Q gi|254780930|r 1 MNILRAIFSLFIVLLAGCT 19 (452)
Q Consensus 1 M~~~~~~~~l~~~~l~gC~ 19 (452)
||++|.+++++++++.+|+
T Consensus 1 M~~~~~~~~~~~~~~~~~~ 19 (294)
T 3dw0_A 1 MSLYRRLVLLSCLSWPLAG 19 (294)
T ss_dssp -------------------
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 9258999999999999874
No 24
>>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:)
Probab=26.21 E-value=27 Score=12.71 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999975026899
Q gi|254780930|r 5 RAIFSLFIVLLAGCTVGPE 23 (452)
Q Consensus 5 ~~~~~l~~~~l~gC~~~p~ 23 (452)
|.++.++.+++.||+..|.
T Consensus 3 K~~i~f~~~~i~~~ss~~~ 21 (186)
T 2f2f_C 3 KYLLSFLLSMILTLTSHAE 21 (186)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 1169999999986114665
No 25
>>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B (A:1-304,A:338-375)
Probab=25.03 E-value=19 Score=13.73 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 93069999999999975026
Q gi|254780930|r 1 MNILRAIFSLFIVLLAGCTV 20 (452)
Q Consensus 1 M~~~~~~~~l~~~~l~gC~~ 20 (452)
||+++.+++++++++.+|+.
T Consensus 1 M~~~~~~~~~~~~~~~~~~~ 20 (342)
T 2w5v_A 1 MKLKKIVFTLIALGLFSCKT 20 (342)
T ss_dssp --------------------
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 97079999999999999764
No 26
>>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:1-109,A:208-279)
Probab=22.85 E-value=27 Score=12.74 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHH-HHHHHHC
Q ss_conf 930699999999-9997502
Q gi|254780930|r 1 MNILRAIFSLFI-VLLAGCT 19 (452)
Q Consensus 1 M~~~~~~~~l~~-~~l~gC~ 19 (452)
||+++.++++++ +++++|.
T Consensus 1 Mk~~~~~~~~~~~~~~~~~~ 20 (181)
T 3e4r_A 1 MGSSHHHHHHSSGLVPRGSH 20 (181)
T ss_dssp --------------------
T ss_pred CCCCCCCCCCHHCCCCCCCC
T ss_conf 98654444310003446777
Done!