HHsearch results for GI: 254780930 and protein with PDBid: 1yc9_A
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=446.09 Aligned_cols=408 Identities=20% Similarity=0.328 Sum_probs=364.8
Q ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC----------
Q ss_conf 6666768623436609987999999999708998999999999999999875420530111011245665----------
Q gi|254780930|r 42 KNLINIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPN---------- 111 (452)
Q Consensus 42 ~~~~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~---------- 111 (452)
....+++..+||+.|+||||+++|+.|++|||+|++++.+++++++.+..+++.++|++++++++.....
T Consensus 16 ~~~~~~~~~~w~~~~~d~tL~~~I~~Al~nnp~l~~a~~~~~~a~~~~~~a~~~~~P~l~~~~~~~~~~~~~~~~~~~~~ 95 (442)
T 1yc9_A 16 QAEMDWPSANWWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSERYQSATPP 95 (442)
T ss_dssp -----CCCTTGGGGGCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEEEEEEECCSSSSCSSCC
T ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 12479983678876799889999999996499999999999999999999637458805677422114566555677888
Q ss_pred --CCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --5544444321110110012345-7788887776555679999999999999876666777889999999999999999
Q gi|254780930|r 112 --LKTNSTGQLDSDWKIDLFGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNI 188 (452)
Q Consensus 112 --~~~~~~~~~~~s~~ldl~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~ 188 (452)
....+..+++++|++++||++. .++.+....+.++..++.++.+++.+|..+|++++.+++.+++.++.++..++.+
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~a~~~~~~a~~~~~~~~~~l~~~v~~~y~~~~~~~~~~~~~~~~l~~~~~~~ 175 (442)
T 1yc9_A 96 DGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTV 175 (442)
T ss_dssp CSEEEEEEEEEEEEEECCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77664321246789986103311299999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCH
Q ss_conf 87876554323456777653222355798999999856888876877639992130001234554433100122104887
Q gi|254780930|r 189 ELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIP 268 (452)
Q Consensus 189 ~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
+.++.+++.|.++..|+.+++.++..++..+..++.++..++..|..++|.+|.....+......... ..+.+...+
T Consensus 176 ~~~~~~~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 252 (442)
T 1yc9_A 176 ELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQGPDRAASIEEPHITLTS---RYGLPSEAG 252 (442)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCCCCCCCCCC---CC-------
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCHHHH
T ss_conf 99999996575117689999987511269999999999999999999847687521246654212345---667806667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC---CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 899730234556555899996430101122221001122221122---34454454104431122345101245665677
Q gi|254780930|r 269 ADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTH---DNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIR 345 (452)
Q Consensus 269 ~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~---~~~~~~~~~~~~~g~~l~~Pif~gg~~~a~i~ 345 (452)
..++.+||||+.++..+++++.+++.+++.++|+|++.+++++.. ++.+...+..|++|++++||||+||+++++++
T Consensus 253 ~~~l~~~p~l~~~~~~~~~a~~~~~~~~~~~~P~l~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ls~plf~~~~~~~~~~ 332 (442)
T 1yc9_A 253 VGLLGHRADITAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFTGGRLEGQLT 332 (442)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEESGGGTTSTTCEEEEEEEEEECCCCCTTHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 77885396999999999999999999875208873045521300034544345652012114323576332364100599
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999998718832899999999999999
Q gi|254780930|r 346 RAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVE 425 (452)
Q Consensus 346 ~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~ 425 (452)
.+++..+++..++++..+++..+|++++..+....+++..+++.+..+++.++.++.+|+.|.++++||+++++++++++
T Consensus 333 ~a~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~s~~dvl~a~~~l~~a~ 412 (442)
T 1yc9_A 333 SAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVLVAEESLLNNQ 412 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999879961999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999999984999998
Q gi|254780930|r 426 VDLSIAKRQLAKSYVDLYIAIGSGYNP 452 (452)
Q Consensus 426 ~~~~~a~~~~~~a~~~L~~AlGGg~~~ 452 (452)
.+++++++++..+.++|++||||||.|
T Consensus 413 ~~~~~~~~~~~~a~~~L~~AlGgg~~~ 439 (442)
T 1yc9_A 413 RALVNLQSRAFSLDLALIHALGGGFET 439 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999981799898