HHSEARCH alignment of GI: 254780930 and SCOP domain: d1ek9a_

Alignment
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=353.46  Aligned_cols=384  Identities=14%  Similarity=0.168  Sum_probs=339.6

Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCC-------CCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9999999997089989999999999999998754205301110112456655-------544444321110110012345
Q gi|254780930|r   61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNL-------KTNSTGQLDSDWKIDLFGQRR  133 (452)
Q Consensus        61 L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~-------~~~~~~~~~~s~~ldl~G~~~  133 (452)
                      |.++++.|++|||+|+.++.+++.+++.+..+++.++|++++++++++....       ...+..+++++|+|..||+..
T Consensus         3 L~~~~~~Al~nnp~l~~a~~~~~~a~~~~~~a~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~q~l~~~~~~~   82 (428)
T d1ek9a_           3 LMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWR   82 (428)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEEEEEEEECSSSTTCEEEEEEEEEEEEEEEECHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCHHHH
T ss_conf             89999999971999999999999999999997356488378998665435767777777674258999999975661579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77888877765556799999999999998766667778899999999999999998787655432345677765322235
Q gi|254780930|r  134 HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIK  213 (452)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~  213 (452)
                      .++.+....+.++..+..++.+++.+|..+||+++.+++.+++.++.++..++.++.++.+++.|.++..|+.+++.++.
T Consensus        83 ~~~~a~~~~~~a~~~~~~~~~~l~~~v~~ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~  162 (428)
T d1ek9a_          83 ALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYD  162 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99999999998799999999999999999998899998878777667888888888888887652000001245666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             57989999998568888768776399921300012345544331001221048878997302345565558999964301
Q gi|254780930|r  214 SIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIG  293 (452)
Q Consensus       214 ~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~~~~~a~~~i~  293 (452)
                      ..+.++..++..+..++..|..++|.+++..............+....    .+...++.+|||++.++..++.+...++
T Consensus       163 ~~~~~l~~a~~~~~~~~~~L~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~p~~~~~~~~~~~~~~~~~  238 (428)
T d1ek9a_         163 TVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVN----ALLKEAEKRNLSLLQARLSQDLAREQIR  238 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCSEEEEECTTTCCCCCCCCHH----HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             777765554368999998877774167300012443111356520134----5667766411455347778999999999


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCC-------------CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01122221001122221122344-------------54454104431122345101245665677999999999999999
Q gi|254780930|r  294 IAKSDLYPSLSLNGSIALTHDNS-------------FPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE  360 (452)
Q Consensus       294 ~a~a~~~P~i~l~~~~~~~~~~~-------------~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~~~~~a~~~~~~  360 (452)
                      .+++.++|++++++++++...+.             .......|++|++++||||+||+..++++.++...+++..+++.
T Consensus       239 ~~~~~~~P~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~plf~g~~~~~~~~~a~~~~~~~~~~~~~  318 (428)
T d1ek9a_         239 QAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLES  318 (428)
T ss_dssp             HHHGGGSCEEEEEEEEEEECCEEESTTSSSSCCSTTSCCCCEEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99971299520020002123224676555543223566555543899999874027776777766678999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999998718832899999999999999999999999999999
Q gi|254780930|r  361 TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYV  440 (452)
Q Consensus       361 ~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~~a~~~~~~a~~  440 (452)
                      ..+++..+|.+++..+....+++..+++.+..+++.++.++.+|+.|.++++||+++++++++++.++++++++++.+.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~y~~G~~s~~dll~a~~~~~~a~~~~~~a~~~~~~a~~  398 (428)
T d1ek9a_         319 AHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQL  398 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88789999999999999999999999999999999999999999779972999999999999999999999999999999


Q ss_pred             HHHHHHCC
Q ss_conf             99998499
Q gi|254780930|r  441 DLYIAIGS  448 (452)
Q Consensus       441 ~L~~AlGG  448 (452)
                      +|++++|-
T Consensus       399 ~L~~~~G~  406 (428)
T d1ek9a_         399 NIKSALGT  406 (428)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHCC
T ss_conf             99998589


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Outer membrane efflux proteins (OEP)
superfamily: Outer membrane efflux proteins (OEP)
family: Outer membrane efflux proteins (OEP)
domain: Integral outer membrane protein TolC, efflux pump component
species: Escherichia coli [TaxId: 562]