Query gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs 237 out of 6667
Neff 9.6
Searched_HMMs 13730
Date Wed Jun 1 11:16:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780930.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wp1a_ f.5.1.1 (A:) Outer mem 100.0 0 0 454.7 46.2 430 18-451 1-451 (456)
2 d1ek9a_ f.5.1.1 (A:) Integral 100.0 0 0 353.5 42.1 384 61-448 3-406 (428)
3 d1ek9a_ f.5.1.1 (A:) Integral 99.8 7.9E-18 5.8E-22 131.3 21.3 183 60-242 208-409 (428)
4 d1wp1a_ f.5.1.1 (A:) Outer mem 99.8 5.3E-16 3.9E-20 119.4 23.7 117 332-448 124-240 (456)
5 d1vf7a_ f.46.1.1 (A:) Multidru 57.1 3.8 0.00028 15.7 7.0 39 190-228 71-109 (237)
6 d1sffa_ c.67.1.4 (A:) 4-aminob 9.2 32 0.0023 9.7 0.1 8 444-452 267-274 (425)
7 d2i53a2 a.74.1.1 (A:158-267) C 8.8 34 0.0025 9.5 4.0 48 7-70 48-96 (110)
8 d1pbyc_ a.137.9.1 (C:) Quinohe 7.8 40 0.0029 9.1 0.2 19 117-135 8-26 (79)
9 d2ftxb1 d.300.1.2 (B:155-213) 7.5 42 0.003 8.9 1.3 9 439-447 7-15 (59)
10 d1jmxg_ a.137.9.1 (G:) Quinohe 7.1 41 0.003 9.0 -0.2 19 117-135 6-24 (77)
No 1
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00 E-value=0 Score=454.75 Aligned_cols=430 Identities=22% Similarity=0.384 Sum_probs=374.9
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02689999999564750102467-----7666676862343660998799999999970899899999999999999987
Q gi|254780930|r 18 CTVGPEYTKPHMPLLPTQFSIGN-----SKNLINIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSV 92 (452)
Q Consensus 18 C~~~p~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a 92 (452)
|++.|++.+|..|+.+....... ..+..++...+||..|+||||+++|++|++|||+|++++.+++++++++..+
T Consensus 1 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~d~tL~~~i~~Al~nnp~l~~a~~~~~~a~~~~~~a 80 (456)
T d1wp1a_ 1 CSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQ 80 (456)
T ss_dssp CCCCCCCCCCCCCSCSSCCCSTTCCCCCCSCSSCGGGSCHHHHBCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999979998765666655455677656765652599865988899999999970999999999999999999997
Q ss_pred HHHHCCCHHHCCCCCCCCCCCC---------CC---CCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5420530111011245665554---------44---443211101100123457-7888877765556799999999999
Q gi|254780930|r 93 RADLFPSSYASISHRFIPNLKT---------NS---TGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISK 159 (452)
Q Consensus 93 ~a~~~P~~~~~~~~~~~~~~~~---------~~---~~~~~~s~~ldl~G~~~~-~~~a~~~~~~~~~~~~~~~~~l~~~ 159 (452)
++.++|++++++++.+...... .. .......|.+++||++.. ++.+....+.++..+..++.+++.+
T Consensus 81 ~a~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 160 (456)
T d1wp1a_ 81 RADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVAS 160 (456)
T ss_dssp HHTTSCCCBCCCBCCCCBCCTTTSSSSSCCBCCCEEEECBEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42408805786223320366655678887766432112220112334335677788888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99876666777889999999999999999878765543234567776532223557989999998568888768776399
Q gi|254780930|r 160 LIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGY 239 (452)
Q Consensus 160 v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~ 239 (452)
|.++||+++.+++.+++.++.++.+++.++.++.+++.|.++..|+.+++.++...+..+..++.++..++..|..++|.
T Consensus 161 v~~aY~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~ 240 (456)
T d1wp1a_ 161 VATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGS 240 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998777899999999999999999888637852010004788999999889999999999999999998289
Q ss_pred CHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCC---C
Q ss_conf 9213000123455443310012210488789973023455655589999643010112222100112222112234---4
Q gi|254780930|r 240 PATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDN---S 316 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~---~ 316 (452)
++............ ....+.+..+...++.+||||++++..+++++..++.+++.++|+|++++++++...+ .
T Consensus 241 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~pdl~~~~~~~~~a~~~~~~a~~~~~P~l~l~~~~~~~~~~~~~~ 316 (456)
T d1wp1a_ 241 GIPANLPQGLGLDQ----TLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGL 316 (456)
T ss_dssp CCCSSCCCCCCTTS----CCBCCCCCCCTTHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCEEEESSGGGT
T ss_pred CCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 97532100124211----36877854679999985100267899999889999999975301321000034454456644
Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54454104431122345101245665677999999999999999999999999999999999999999999999999999
Q gi|254780930|r 317 FPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKS 396 (452)
Q Consensus 317 ~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~ 396 (452)
+......|.+|++++||||+||+++++++.++++.+++..+++++.+++..+|++++.++..+.+++...++.++.+++.
T Consensus 317 ~~~~~~~~~~g~~~~~pl~~g~~~~~~~~~a~~~~~~a~~~~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~~~~a~~~ 396 (456)
T d1wp1a_ 317 FDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEY 396 (456)
T ss_dssp TSTTCEECCEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45665432213011232000000111256899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999871883289999999999999999999999999999999998499999
Q gi|254780930|r 397 MSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYN 451 (452)
Q Consensus 397 ~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg~~ 451 (452)
++..+.+|+.|.++++||+++++++++++.+++++++++..+.++|++|+||||+
T Consensus 397 ~~~~~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~alGg~~~ 451 (456)
T d1wp1a_ 397 YQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWN 451 (456)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999987996199999999999999999999999999999999998379998
No 2
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=353.46 Aligned_cols=384 Identities=14% Similarity=0.168 Sum_probs=339.6
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCC-------CCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9999999997089989999999999999998754205301110112456655-------544444321110110012345
Q gi|254780930|r 61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNL-------KTNSTGQLDSDWKIDLFGQRR 133 (452)
Q Consensus 61 L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~-------~~~~~~~~~~s~~ldl~G~~~ 133 (452)
|.++++.|++|||+|+.++.+++.+++.+..+++.++|++++++++++.... ...+..+++++|+|..||+..
T Consensus 3 L~~~~~~Al~nnp~l~~a~~~~~~a~~~~~~a~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~q~l~~~~~~~ 82 (428)
T d1ek9a_ 3 LMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWR 82 (428)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEEEEEEEECSSSTTCEEEEEEEEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCHHHH
T ss_conf 89999999971999999999999999999997356488378998665435767777777674258999999975661579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77888877765556799999999999998766667778899999999999999998787655432345677765322235
Q gi|254780930|r 134 HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIK 213 (452)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~ 213 (452)
.++.+....+.++..+..++.+++.+|..+||+++.+++.+++.++.++..++.++.++.+++.|.++..|+.+++.++.
T Consensus 83 ~~~~a~~~~~~a~~~~~~~~~~l~~~v~~ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~ 162 (428)
T d1ek9a_ 83 ALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYD 162 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999998799999999999999999998899998878777667888888888888887652000001245666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57989999998568888768776399921300012345544331001221048878997302345565558999964301
Q gi|254780930|r 214 SIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIG 293 (452)
Q Consensus 214 ~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~~~~~a~~~i~ 293 (452)
..+.++..++..+..++..|..++|.+++..............+.... .+...++.+|||++.++..++.+...++
T Consensus 163 ~~~~~l~~a~~~~~~~~~~L~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 238 (428)
T d1ek9a_ 163 TVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVN----ALLKEAEKRNLSLLQARLSQDLAREQIR 238 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSEEEEECTTTCCCCCCCCHH----HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 777765554368999998877774167300012443111356520134----5667766411455347778999999999
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCC-------------CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01122221001122221122344-------------54454104431122345101245665677999999999999999
Q gi|254780930|r 294 IAKSDLYPSLSLNGSIALTHDNS-------------FPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE 360 (452)
Q Consensus 294 ~a~a~~~P~i~l~~~~~~~~~~~-------------~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~~~~~a~~~~~~ 360 (452)
.+++.++|++++++++++...+. .......|++|++++||||+||+..++++.++...+++..+++.
T Consensus 239 ~~~~~~~P~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~plf~g~~~~~~~~~a~~~~~~~~~~~~~ 318 (428)
T d1ek9a_ 239 QAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLES 318 (428)
T ss_dssp HHHGGGSCEEEEEEEEEEECCEEESTTSSSSCCSTTSCCCCEEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99971299520020002123224676555543223566555543899999874027776777766678999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999998718832899999999999999999999999999999
Q gi|254780930|r 361 TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYV 440 (452)
Q Consensus 361 ~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~~a~~~~~~a~~ 440 (452)
..+++..+|.+++..+....+++..+++.+..+++.++.++.+|+.|.++++||+++++++++++.++++++++++.+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~y~~G~~s~~dll~a~~~~~~a~~~~~~a~~~~~~a~~ 398 (428)
T d1ek9a_ 319 AHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQL 398 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88789999999999999999999999999999999999999999779972999999999999999999999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99998499
Q gi|254780930|r 441 DLYIAIGS 448 (452)
Q Consensus 441 ~L~~AlGG 448 (452)
+|++++|-
T Consensus 399 ~L~~~~G~ 406 (428)
T d1ek9a_ 399 NIKSALGT 406 (428)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHCC
T ss_conf 99998589
No 3
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=99.81 E-value=7.9e-18 Score=131.31 Aligned_cols=183 Identities=17% Similarity=0.195 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC------------------CCCCCCCCCC
Q ss_conf 7999999999708998999999999999999875420530111011245665------------------5544444321
Q gi|254780930|r 60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPN------------------LKTNSTGQLD 121 (452)
Q Consensus 60 ~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~------------------~~~~~~~~~~ 121 (452)
.+++++..++.++|+++.+..+++.++..+..+++.++|++++.+++++... .......+++
T Consensus 208 ~~~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 287 (428)
T d1ek9a_ 208 PVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLS 287 (428)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEEEEEECCEEESTTSSSSCCSTTSCCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 13456677664114553477789999999999997129952002000212322467655554322356655554389999
Q ss_pred CCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110110012345-7788887776555679999999999999876666777889999999999999999878765543234
Q gi|254780930|r 122 SDWKIDLFGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGAT 200 (452)
Q Consensus 122 ~s~~ldl~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~ 200 (452)
++|++..+|+.+ .++.++...+.++.+++..+.++..++..+|.++....+.+...++.++..++.++..+.+|+.|.+
T Consensus 288 ~~~plf~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~y~~G~~ 367 (428)
T d1ek9a_ 288 FSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTR 367 (428)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98740277767777666789999999999888878999999999999999999999999999999999999999977997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 567776532223557989999998568888768776399921
Q gi|254780930|r 201 SKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPAT 242 (452)
Q Consensus 201 ~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~ 242 (452)
+..|++.++..+.+++..+..++.++..+...|...+|.-..
T Consensus 368 s~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~G~L~~ 409 (428)
T d1ek9a_ 368 TIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNE 409 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 299999999999999999999999999999999998589998
No 4
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.77 E-value=5.3e-16 Score=119.37 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 45101245665677999999999999999999999999999999999999999999999999999999999987188328
Q gi|254780930|r 332 LPIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSL 411 (452)
Q Consensus 332 ~Pif~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~ 411 (452)
|++|.+|++...++.++...+.+...++.+..+...+|..+|.++..+.+.+...++.++.+++.++.++.+|+.|.++.
T Consensus 124 ~~l~~~g~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~ 203 (456)
T d1wp1a_ 124 WELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASA 203 (456)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 23343356777888888888888999999999999999999999999877789999999999999999988863785201
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999999998499
Q gi|254780930|r 412 LDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448 (452)
Q Consensus 412 ~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGG 448 (452)
.|++.++..+.+++..+..++.++..+...|..-+|.
T Consensus 204 ~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~ 240 (456)
T d1wp1a_ 204 LDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGS 240 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0004788999999889999999999999999998289
No 5
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=57.06 E-value=3.8 Score=15.74 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787655432345677765322235579899999985688
Q gi|254780930|r 190 LSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRM 228 (452)
Q Consensus 190 ~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~ 228 (452)
..+..+..|..++.++..++..+..++..+..++..+..
T Consensus 71 r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~l~~ 109 (237)
T d1vf7a_ 71 RYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRY 109 (237)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 454444305432200122222001268899997532202
No 6
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Probab=9.21 E-value=32 Score=9.71 Aligned_cols=8 Identities=38% Similarity=0.966 Sum_probs=0.0
Q ss_pred HHHCCCCCC
Q ss_conf 984999998
Q gi|254780930|r 444 IAIGSGYNP 452 (452)
Q Consensus 444 ~AlGGg~~~ 452 (452)
|+||||| |
T Consensus 267 K~l~gG~-P 274 (425)
T d1sffa_ 267 KSIAGGF-P 274 (425)
T ss_dssp GGGGTSS-C
T ss_pred CCCCCCC-C
T ss_conf 0157876-5
No 7
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.75 E-value=34 Score=9.52 Aligned_cols=48 Identities=27% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC-CHHHHHHHHHHHH
Q ss_conf 999999999750268999999956475010246776666768623436609-9879999999997
Q gi|254780930|r 7 IFSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFN-DTSLNKLVKIALQ 70 (452)
Q Consensus 7 ~~~l~~~~l~gC~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~-d~~L~~~i~~Al~ 70 (452)
++.+.++.|++...+-+. +..........||+.|. |-+++++.+...+
T Consensus 48 ~IA~a~I~lA~~~~~~~i----------------p~~~~~~~~~~W~~~f~~dvt~e~i~~i~~~ 96 (110)
T d2i53a2 48 IIAVAVMYLAGRLCKFEI----------------QEWTSKPMYRRWWEQFVQDVPVDVLEDICHQ 96 (110)
T ss_dssp HHHHHHHHHHHHHHTCCG----------------GGGBSSCCSSCGGGGTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC----------------CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999999948998----------------8865676545499998824999999999999
No 8
>d1pbyc_ a.137.9.1 (C:) Quinohemoprotein amine dehydrogenase C chain {Paracoccus denitrificans [TaxId: 266]}
Probab=7.83 E-value=40 Score=9.10 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 4432111011001234577
Q gi|254780930|r 117 TGQLDSDWKIDLFGQRRHI 135 (452)
Q Consensus 117 ~~~~~~s~~ldl~G~~~~~ 135 (452)
+..++..||+|-||...++
T Consensus 8 t~t~dPGWEvD~fGGva~L 26 (79)
T d1pbyc_ 8 TTSFDPGWEVDAFGAVSNL 26 (79)
T ss_dssp CCCCSSBSSSBTTSSSTTS
T ss_pred ECCCCCCCEECCCCCHHHC
T ss_conf 2134898145377667651
No 9
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.51 E-value=42 Score=8.95 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=0.0
Q ss_pred HHHHHHHHC
Q ss_conf 999999849
Q gi|254780930|r 439 YVDLYIAIG 447 (452)
Q Consensus 439 ~~~L~~AlG 447 (452)
.++|||+||
T Consensus 7 kLklYRSLG 15 (59)
T d2ftxb1 7 KLKLYRSLG 15 (59)
T ss_dssp HHHHHHHTT
T ss_pred EEEEHHHCC
T ss_conf 422224346
No 10
>d1jmxg_ a.137.9.1 (G:) Quinohemoprotein amine dehydrogenase C chain {Pseudomonas putida [TaxId: 303]}
Probab=7.12 E-value=41 Score=9.00 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 4432111011001234577
Q gi|254780930|r 117 TGQLDSDWKIDLFGQRRHI 135 (452)
Q Consensus 117 ~~~~~~s~~ldl~G~~~~~ 135 (452)
+..++..||+|-||...++
T Consensus 6 t~t~dPGWEvD~fGGva~L 24 (77)
T d1jmxg_ 6 TATTDPGWEVDAFGGVSSL 24 (77)
T ss_dssp CCCCSSCSSSCTTSSSSSS
T ss_pred CCCCCCCCEECCCCCHHHC
T ss_conf 0444898145377667651
Done!