RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer
membrane efflux protein) [Candidatus Liberibacter asiaticus str.
psy62]
(452 letters)
>gnl|CDD|162557 TIGR01845, outer_NodT, efflux transporter, outer membrane factor
(OMF) lipoprotein, NodT family. Members of this model
comprise a subfamily of the Outer Membrane Factor (TCDB
1.B.17) porins. OMF proteins operate in conjunction with
a primary transporter of the RND, MFS, ABC, or PET
systems, and a MFP (membrane fusion protein) to tranport
substrates across membranes. The complex thus formed
allows transport (export) of various solutes (heavy
metal cations; drugs, oligosaccharides, proteins, etc.)
across the two envelopes of the Gram-negative bacterial
cell envelope in a single energy-coupled step. Current
data suggest that the OMF (and not the MFP) is largely
responsible for the formation of both the trans-outer
membrane and trans-periplasmic channels. The roles
played by the MFP have yet to be determined.
Length = 454
Score = 312 bits (802), Expect = 9e-86
Identities = 139/457 (30%), Positives = 238/457 (52%), Gaps = 25/457 (5%)
Query: 15 LAGCTVGPEYTKPHMPL----LPTQFSIGNSKNLINIDT--LKWWESFNDTSLNKLVKIA 68
L+GC VGP+Y +P PL L + + G L + WW +F D LN L++ A
Sbjct: 1 LSGCAVGPDYARPETPLAAGYLESDPTFGGQGRLSAGVWPAVDWWTAFGDPQLNALIEEA 60
Query: 69 LQQNLTILQATERINAAKENILSVRADLFPSSYASISH------------RFIPNLKTNS 116
L N + A R+ AA+ N+ + RAD FPS S S +L S
Sbjct: 61 LADNPDLQVAEARLRAARANLRAARADFFPSLGLSASATRQKSSEDASGTTSGGSLSNTS 120
Query: 117 TGQLDSDWKIDLFG-QRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERIS 175
T LD +++DLFG RR +ES+LA L++A A A+L + + + +Y+ + ++
Sbjct: 121 TLTLDVSYELDLFGKVRRAVESALAQLEAAEADSQAARLTLSASIANAYVQLAALRAQLD 180
Query: 176 IAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNIST 235
+ H L +K +EL+ ++ G + + + EA + S E+++P+L+ + ++
Sbjct: 181 VYHAALASRRKTLELTQKRYAAGVAAASDVRQAEAAVASAEAELPSLDVQIAQARNALAA 240
Query: 236 LLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIA 295
LLG + L + + Q +P+ +P+DL+R RPDIR E++LA + A+IG+A
Sbjct: 241 LLGKGPSRGLA-IARPLLLDQLPPDLPL--SLPSDLLRRRPDIRAAERRLAAANAQIGVA 297
Query: 296 KSDLYPSLSLNGSI---ALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQ 352
K+ +PS++L+ SI A F G + WS GP L LPIFD G +++ + A+++
Sbjct: 298 KAAFFPSITLSASIGLSASQLSRLFDGGSRFWSIGPALALPIFDGGSLRAALDSAKATYD 357
Query: 353 EQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLL 412
+++TVL A +EV +AL ++ + + + AVE ++++SL+ YR G S L
Sbjct: 358 AAVAQYRQTVLTAFQEVADALVALQALARRLDAQRQAVEQAQEALSLAQTRYRAGLDSYL 417
Query: 413 DILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSG 449
+L+ +R+ + L+ + + V LY A+G G
Sbjct: 418 TVLEAQRSLLTAQRSLATLQARRLSDSVALYKALGGG 454
>gnl|CDD|182103 PRK09837, PRK09837, copper/silver efflux system outer membrane
protein CusC; Provisional.
Length = 461
Score = 125 bits (316), Expect = 2e-29
Identities = 117/458 (25%), Positives = 218/458 (47%), Gaps = 29/458 (6%)
Query: 12 IVLLAGC-TVGPEYTKPHMPLLPTQFSIGNSKNLINIDTL----KWWESFNDTSLNKLVK 66
+ L GC ++ P+Y +P MP+ P QFS+ + L+N W F D + L+
Sbjct: 12 ALALTGCVSLAPDYQRPAMPV-PQQFSLSQNG-LVNAADNYQNTGWRTFFVDNQVKTLIS 69
Query: 67 IALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSD--- 123
AL N + AT ++ A+ AD +P S + NLK ++ +
Sbjct: 70 EALVNNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGNLKGDTATTREYSTGL 129
Query: 124 ---WKIDLFGQRRHI-ESSLAN-LDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAH 178
+ +D FG+ +++ E+ N L S AQ + L ++S + SY + + ++ IA
Sbjct: 130 NLSFDLDFFGRLKNMSEAERQNYLASEEAQRAVHIL-LVSNVAQSYFNQQLAYAQLQIAE 188
Query: 179 QILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLG 238
+ L Y+++ + G+++ L+L + I+S +DI + + + LLG
Sbjct: 189 ETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRADIAKRQGELAQANNALQLLLG 248
Query: 239 YPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSD 298
+ Q Q+ N + + G+ + ++ RPDI E L + A IG A++
Sbjct: 249 ----SYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRPDIMEAEHALMAANANIGAARAA 304
Query: 299 LYPSLSLNGSI-ALTHDNS--FPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQY 355
+PS+SL + + D S F + W+F PK+ +PIF+ G+ ++N+ AE Q+
Sbjct: 305 FFPSISLTSGLSTSSSDLSSLFNASSGMWNFIPKIEIPIFNAGRNQANLDLAEIRQQQSV 364
Query: 356 ITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415
+ +++ + NA KEV +AL ++ Q + + ++ + Y+ G S L++L
Sbjct: 365 VNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYLEVL 424
Query: 416 DIERA---TAKVEVDLSIAKRQLAKSYVDLYIAIGSGY 450
D ER+ T + +DL+ A RQ+ + + L+ A+G G+
Sbjct: 425 DAERSLFATRQTLLDLNYA-RQVNE--ISLFTALGGGW 459
>gnl|CDD|182142 PRK09915, PRK09915, putative outer membrane efflux protein MdtP;
Provisional.
Length = 488
Score = 99 bits (249), Expect = 1e-21
Identities = 95/475 (20%), Positives = 204/475 (42%), Gaps = 53/475 (11%)
Query: 14 LLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINID--TLKWWESFNDTSLNKLVKIALQQ 71
L++GC + + + PH L P Q + + +L + +WW+ ND L+ L++ L
Sbjct: 20 LISGCALVRKDSAPHQQLKPEQIKLADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSG 79
Query: 72 NLTILQATERINAAKE-------------------NILSVRADLFPSSYASISHRFIPNL 112
+ T+ +A R A+ N V A+ F S YA + P L
Sbjct: 80 SHTLAEAKLREEKAQSQADLLDAGSQLQVAALGMLNRQRVSANGFLSPYAMDA----PAL 135
Query: 113 K------TNSTGQLDSDWKIDLFG-QRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYI 165
T +T L + +DL+G R + +++ ++A A+ +L++ + + Y
Sbjct: 136 GMDGPYYTEATVGLFAGLDLDLWGVHRSAVAAAIGAHNAALAETAAVELSLTTGVAQLYY 195
Query: 166 DARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKS 225
+ + + + Q D+ ++ K G +++ A+I +++ I ++
Sbjct: 196 SMQASYQMLDLLEQTRDVIDYAVKAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQ 255
Query: 226 FRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPA----DLIRNRPDIRYQ 281
++ L+G A++ +P + GIPA +L+ RPD++
Sbjct: 256 ITETRESLRALIGAGASDM--------PEIKPVALPRVQTGIPATLSYELLARRPDLQAM 307
Query: 282 EKKLADSVAKIGIAKSDLYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIFDKG 338
+ S+ ++ A++ YPS + G A+ D F + ++F P L LP+FD G
Sbjct: 308 RWYVQASLDQVDSARALFYPSFDIKAFFGLDAIHLDTLFKKTSRQFNFIPGLKLPLFDGG 367
Query: 339 KIKSNIRRAESSAQEQYITWQETVLNAIKEVE---NALTSINEDKKIVTKLQHAVELHKK 395
++ +N+ +++ + ++VLNA+++V L ++N+++++ + A ++
Sbjct: 368 RLNANLEGTRAASNMMIERYNQSVLNAVRDVAVNGTRLQTLNDEREMQAERVEATRFTQR 427
Query: 396 SMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGY 450
+ + Y++G S L + E+ L + + + L ++G GY
Sbjct: 428 AAEAA---YQRGLTSRLQATEARLPVLAEEMSLLMLDSRRVIQSIQLMKSLGGGY 479
>gnl|CDD|162556 TIGR01844, type_I_sec_TolC, type I secretion outer membrane
protein, TolC family. Members of this model are outer
membrane proteins from the TolC subfamily within the RND
(Resistance-Nodulation-cell Division) efflux systems.
These proteins, unlike the NodT subfamily, appear not to
be lipoproteins. All are believed to participate in type
I protein secretion, an ABC transporter system for
protein secretion without cleavage of a signal sequence,
although they may, like TolC, participate also in the
efflux of smaller molecules as well. This family
includes the well-documented examples TolC (E. coli),
PrtF (Erwinia), and AprF (Pseudomonas aeruginosa).
Length = 415
Score = 73.9 bits (182), Expect = 8e-14
Identities = 75/413 (18%), Positives = 159/413 (38%), Gaps = 51/413 (12%)
Query: 59 TSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYAS--ISHRFIPNLKTNS 116
+L V +AL N + A + +A +E + RA L P + + ++
Sbjct: 3 LTLLDAVLLALANNPELRAARAQRDAGEEQVAQARAALLPQLGLTANYGYSNTYPTESRG 62
Query: 117 TGQLDS--DWKIDL------FGQRRHIESSLANLDSAYAQVDIAKL-------NVISKLI 161
+ + L G + +A A A+ ++I +
Sbjct: 63 RNTDLNSGSSTLTLSQPLFDGGSTW------NAVRAAEAAALAARETLRATAQDLILRTA 116
Query: 162 PSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPT 221
+Y++ +E +++A L K+ ++L+ +F G ++ +++ EA S +
Sbjct: 117 EAYMEVLRAQEILALAEANLAALKEQLDLARARFDVGLGTRTDVLQAEARYASARAQ--- 173
Query: 222 LEKSFRMNVHNIST----LLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPD 277
+ N+ + L+G P L +F L P++ + + P
Sbjct: 174 -LIQAQNNLDDAKAQLRRLVGQPELAPL-----AVPSFPAELPEPLDQLLEIAE-ASNPL 226
Query: 278 IRYQEKKLADSVAKIGI--AKSDLYPSLSLNGSIALTHDNSFPGYN---THWSFGPKLYL 332
+ + A A+ + A++ P+LSL S + +S N +S G + +
Sbjct: 227 LLAA--QAAVDAARYQVEQARAGHLPTLSLTASTGNSDTSSGGSGNSDSDTYSVGLNVSI 284
Query: 333 PIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVEL 392
P++ G + +R+A + T + ++V NA +++N V + V
Sbjct: 285 PLYQGGATSAQVRQAAHQLNQSRSTLESQKRTVRQQVRNAWSNLNAAAASVQAYEQQVAS 344
Query: 393 HKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIA 445
+K++ Y+ G +LLD+L+ E+ +L A+++LA + D A
Sbjct: 345 AQKALDAYRQEYQVGTRTLLDVLNAEQ-------ELYQARQELANARYDYLQA 390
>gnl|CDD|183143 PRK11459, PRK11459, multidrug resistance outer membrane protein
MdtQ; Provisional.
Length = 478
Score = 51.1 bits (122), Expect = 6e-07
Identities = 91/446 (20%), Positives = 176/446 (39%), Gaps = 60/446 (13%)
Query: 3 ILRAIFSLFIVLLAGCTVGPEYTKP---HMPL------LPTQFSIGNSKNLINIDTLKWW 53
A L I +LAGC E + P LPT G + +WW
Sbjct: 8 PAIACLPLLI-MLAGCAPMHETRQALSQQTPAAHVDTALPTALKNGWPDS-------QWW 59
Query: 54 ESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPS------------SY 101
++++D L+ L+ ALQ + A +RI A+ +V A P S
Sbjct: 60 KAYHDNQLDSLINNALQNAPDMQVAEQRIQLAEAQAKAVAAQDGPQLDFSADMERQKMSA 119
Query: 102 ASISHRFIPNLK---------TNSTGQLDSDWKIDLFGQRR-HIESSLANLDSAYAQVDI 151
+ F N TN T L + W +DL+G+ R + + + + + A+ +
Sbjct: 120 EGLMGPFALNDPAAGTTGPWYTNGTFGLTAGWDLDLWGKNRAEVTARIGTVKARAAEREQ 179
Query: 152 AKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAE 211
+ + + Y + + ++ QI I + G TS S+ +E +
Sbjct: 180 TRQLLAGSVARLYWEWQTQAALNTVLQQIEKEQNNIIATDRQLYQNGITS--SVEGVETD 237
Query: 212 IKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPA-- 269
I + ++ + + +M + I L L Q +S +P + +P
Sbjct: 238 INASKTRQQLNDVAGKMKI--IEARL-----SALTNTQTKSLKLKPVALPKVASQLPDEL 290
Query: 270 --DLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSI---ALTHDNSFPGYNTHW 324
L+ R D++ + S++ I AK+ YP ++L + AL + F
Sbjct: 291 GYSLLARRADLQAAHWYIESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQM 350
Query: 325 SFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVT 384
L LPIFD G++ +N+ A++ + ++ + V++A+ +V A + + + +
Sbjct: 351 GVTAGLTLPIFDSGRLNANLDIAKAQSNLSIASYNKAVVDAVNDVARAASQV---ETLAE 407
Query: 385 KLQHAVELHKKSMSLSMINYRQGRYS 410
K QH ++ + +L ++ Q R++
Sbjct: 408 KNQHQQQIERD--ALRVVGLAQARFN 431
>gnl|CDD|181880 PRK09465, tolC, outer membrane channel protein; Reviewed.
Length = 446
Score = 37.6 bits (88), Expect = 0.007
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 292 IGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHW---------SFGPKLYLPIFDKGKIKS 342
I +A++ P+L L S ++ D S+ G N G L LP++ G + S
Sbjct: 259 IRLAQAGHMPTLDLTASYGIS-DTSYSGANGTQYDDSDMGQNKVGLNLSLPLYSGGAVNS 317
Query: 343 NIRRAES---SAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSL 399
+++A+ A EQ + + ++ V ++ +IN + + AV + S+
Sbjct: 318 QVKQAQYNFVGASEQL---ESAHRSVVQTVRSSFNNINASISSINAYEQAVVSAQSSLDA 374
Query: 400 SMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKS 438
+ Y G +++D+LD L AK+QL+ +
Sbjct: 375 TEAGYEVGTRTIVDVLDATT-------TLYDAKQQLSNA 406
Score = 28.0 bits (63), Expect = 6.0
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 43 NLINIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPS 99
++N + + S+N L+K A ++NL++L A + A+E I +A P+
Sbjct: 216 AVLNTERFS---TPKPQSVNALLKEAEKRNLSLLSARLSQDLAREQIRLAQAGHMPT 269
>gnl|CDD|181736 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 711
Score = 32.9 bits (76), Expect = 0.16
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 335 FDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKI-VTKLQHAVE-- 391
FD KIK+ I +A + + + TV I + ++ + ++Q AVE
Sbjct: 15 FDSEKIKNAIEKAAKAVEVDDEDYCATVAAEIAS------RVEGRDEVDIEEIQDAVENQ 68
Query: 392 ---LHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAK 432
K+++ + I YR R DI R A +++ I
Sbjct: 69 LMAGPYKALARAYIEYRHDR-------DIAREKAT-DLNEEIRG 104
>gnl|CDD|178885 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 29.3 bits (67), Expect = 2.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 218 DIPTLEKSFRMNVHNISTLLGYPAT 242
+ T K FR + + LL Y AT
Sbjct: 23 NTST--KRFRELLEELGRLLAYEAT 45
>gnl|CDD|178332 PLN02731, PLN02731, Putative lipid phosphate phosphatase.
Length = 333
Score = 29.2 bits (65), Expect = 2.0
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 259 LYIPINIGIPADLIRN-----RPDIRYQ----EKKLADSVAKIGIAKSDLYPSLSLNGSI 309
LY + + D I+N RPD ++ K L DS+ + I D S+
Sbjct: 123 LYSVLVTAVLTDAIKNAVGRPRPDFFWRCFPDGKALYDSLGDV-ICHGD--------KSV 173
Query: 310 ALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKS 342
SFP +T WSF +L ++ GKI++
Sbjct: 174 IREGHKSFPSGHTSWSFSGLGFLSLYLSGKIQA 206
>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1170
Score = 29.3 bits (66), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 160 LIPSYIDARHFKERISIAHQIL 181
LIP +I+ +H +E I AH +L
Sbjct: 655 LIPKFINRKHGREAIDFAHPLL 676
>gnl|CDD|178317 PLN02715, PLN02715, lipid phosphate phosphatase.
Length = 327
Score = 29.3 bits (65), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 316 SFPGYNTHWSFGPKLYLPIFDKGKIKS 342
SFP +T WSF +L ++ GKIK+
Sbjct: 186 SFPSGHTSWSFAGLTFLSLYLSGKIKA 212
>gnl|CDD|185367 PRK15470, emtA, lytic murein endotransglycosylase E; Provisional.
Length = 203
Score = 28.8 bits (64), Expect = 2.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 8 FSLFIVLLAGCTVGPEYTKP 27
F+ IVLLAGC+ +YT P
Sbjct: 6 FAFLIVLLAGCSSKHDYTNP 25
>gnl|CDD|185368 PRK15471, PRK15471, chain length determinant protein WzzB;
Provisional.
Length = 325
Score = 28.6 bits (64), Expect = 3.4
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 25/99 (25%)
Query: 340 IKSNIRRAESSAQEQYITWQETVLNA-----IKEVENALTSINEDKKIVTKLQHAVELHK 394
+K NI + Q+ T QE V IK+++ AL N+ ++Q ++ +
Sbjct: 167 LKDNIALRTKTLQDSLET-QEVVAQEQKDLRIKQIQEALQYANQANITKPQIQQTQDVTQ 225
Query: 395 KSMSL-------SMI------------NYRQGRYSLLDI 414
++ L SMI NY Q R +LLDI
Sbjct: 226 DTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI 264
>gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 28.7 bits (65), Expect = 3.4
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 78 ATERINAAKENIL-SVRADLF--PSSYAS 103
A+ER AA ENI S R+ F P S S
Sbjct: 350 ASEREFAADENIRNSTRSTDFITPKSPVS 378
>gnl|CDD|161945 TIGR00594, polc, DNA-directed DNA polymerase III (polc). This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University).
Length = 1022
Score = 28.5 bits (64), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 158 SKLIPSYIDARHFKERISIAHQIL 181
S +IP +ID +H +E I H +L
Sbjct: 642 SGMIPDFIDRKHGREPIEYPHPLL 665
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.
Length = 874
Score = 28.2 bits (63), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 160 LIPSYIDARHFKERISIAHQILD 182
LIP +I+ +H +E I HQ+L+
Sbjct: 672 LIPKFINRKHGREPIDYEHQLLE 694
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 28.0 bits (62), Expect = 5.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 329 KLYLPIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVEN-----ALTSI 376
KL L F I++ + ES AQE +W+ T +N +E++ AL SI
Sbjct: 131 KLVLRAFMPDAIRNMVPDIESIAQESLNSWEGTQINTYQEMKTYTFNVALLSI 183
>gnl|CDD|181379 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 28.0 bits (63), Expect = 5.6
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 285 LADSVAKIGIAKSDLYPSL-SLNGSIALTH 313
+ DS A++ I S+L P + G++ L H
Sbjct: 104 VTDSGARVAIVGSELAPKVAPAVGNLRLRH 133
>gnl|CDD|177892 PLN02250, PLN02250, lipid phosphate phosphatase.
Length = 314
Score = 27.6 bits (61), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 316 SFPGYNTHWSFGPKLYLPIFDKGKIKSNIRR 346
SFP +T WSF +L ++ GKI+ RR
Sbjct: 162 SFPSGHTSWSFAGLGFLSLYLSGKIRVFDRR 192
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function.
Length = 771
Score = 27.1 bits (60), Expect = 10.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 353 EQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKK 395
E QE + KEVE+ + + E K K ++E K
Sbjct: 565 ELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVK 607
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,073,049
Number of extensions: 444721
Number of successful extensions: 967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 31
Length of query: 452
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,898,497
Effective search space: 1383966435
Effective search space used: 1383966435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)