RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] (452 letters) >1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:1-69,A:115-283) Length = 238 Score = 111 bits (279), Expect = 1e-25 Identities = 41/249 (16%), Positives = 97/249 (38%), Gaps = 37/249 (14%) Query: 52 WWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPN 111 WW+ + D LN L++ ALQ + ++ A R+ A+ A Sbjct: 26 WWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGA----------------- 68 Query: 112 LKTNSTGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHF 170 ++G+ R + ++ + L +A A+ A+L + + + +Y + Sbjct: 69 ----------------IWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARL 112 Query: 171 KERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNV 230 H L + K +EL ++ G + S+ + +A S+E+++ +++S ++ Sbjct: 113 YANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQK 172 Query: 231 HNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVA 290 + ++ L+G + + + L+ +R DI + + Sbjct: 173 NALAALVGQGPDRAA---SIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQ 229 Query: 291 KIGIAKSDL 299 ++GIA++ Sbjct: 230 QVGIAQAQF 238 >3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:44-85,A:128-296) Length = 211 Score = 106 bits (266), Expect = 5e-24 Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 35/245 (14%) Query: 56 FNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTN 115 F D L +L+ +AL+ N + A + A + RADLF Sbjct: 1 FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLF------------------ 42 Query: 116 STGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERI 174 LFG+ R + +L + A+ +++ + +Y+ + + ++ Sbjct: 43 ------------LFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQL 90 Query: 175 SIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNIS 234 + L Y+K+ +L+ + G S L L + + ++ + + + + + + Sbjct: 91 QLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALV 150 Query: 235 TLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGI 294 LLG L Q L + G+P+DL++ RPDI E +L + A IG Sbjct: 151 LLLGSGIPANL----PQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGA 206 Query: 295 AKSDL 299 A++ Sbjct: 207 ARAAF 211 >1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:323-442) Length = 120 Score = 85.7 bits (212), Expect = 1e-17 Identities = 24/115 (20%), Positives = 56/115 (48%) Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397 G+++ + AE+ QE + T++ A+ E+ + +TS + + K + AV+ ++++ Sbjct: 3 GRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQAL 62 Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 ++ Y+ G + LD+L E + + L + + + L A+G G+ Sbjct: 63 HIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 117 >1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:203-243,A:295-406) Length = 153 Score = 80.1 bits (197), Expect = 5e-16 Identities = 18/111 (16%), Positives = 49/111 (44%) Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397 G + S +++A+ + + + ++ V ++ +IN + + AV + S+ Sbjct: 43 GXVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSL 102 Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448 Y G +++D+LD + +L+ A+ + +++ A+G+ Sbjct: 103 DAXEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGT 153 >3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:336-449) Length = 114 Score = 80.0 bits (197), Expect = 5e-16 Identities = 23/112 (20%), Positives = 50/112 (44%) Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397 G +++++ A+ +++ + A +EV + L + + + + V+ + Sbjct: 3 GSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYY 62 Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSG 449 L+ YR G + L +LD +R+ + L + S V+LY A+G G Sbjct: 63 QLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGG 114 >1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:1-34,A:78-202,A:407-428) Length = 181 Score = 68.8 bits (167), Expect = 1e-12 Identities = 13/145 (8%), Positives = 40/145 (27%), Gaps = 2/145 (1%) Query: 132 RRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELS 191 R + + +I +Y + + + +S + + ++ + Sbjct: 38 WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQT 97 Query: 192 HLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251 +F G + + A+ ++ ++ T + V + + G E Sbjct: 98 TQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPE--LAALNV 155 Query: 252 SNNFQPNLYIPINIGIPADLIRNRP 276 N + + + P Sbjct: 156 ENFKLNEQDLLALNNALSKPVSTNP 180 >1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:70-114,A:284-322) Length = 84 Score = 42.9 bits (101), Expect = 8e-05 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Query: 263 INIGIPADLIRNRPDIRYQEKKLADSVAKIGIAK------SDLYPSLSLNGSI---ALTH 313 ++G+ A ++ RYQ D G D YP ++L+ I A Sbjct: 3 FDLGLAASATESKVSERYQSATPPDGWNDYGTLTLNFQYDFDFYPDVTLSAFIGYQAFGL 62 Query: 314 DNSFPGYNTHWSFGPKLYLPIF 335 D+ F N + GP +YLP+F Sbjct: 63 DHLFDSGNDAGAIGPAIYLPLF 84 >3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:86-127,A:297-335) Length = 81 Score = 39.2 bits (92), Expect = 0.001 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 290 AKIGIAKSDL-YPSLSLNGSI---ALTHDNSFPGYNTHWSFGPKLYLPIF 335 +G +L +PS+SL + + F + W F P + LPIF Sbjct: 32 VTLGTTAWELDFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIF 81 >1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} (A:1-215) Length = 215 Score = 32.2 bits (73), Expect = 0.16 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKL 160 YA+ + R +P + +S+G L ++ GQ + + Y + ++ L + Sbjct: 112 YANGTQRVLPIISLDSSGNL----VVEFEGQTGRTVLATGTAATEYHKFELVFLPGSNPS 167 Query: 161 IPSYID 166 Y D Sbjct: 168 ASFYFD 173 >1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} (A:9-69) Length = 61 Score = 28.9 bits (65), Expect = 1.2 Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQ 251 K FR V ++TL+ + T L + + Sbjct: 19 KEFRELVDEVATLMAFEITRDLPLEEVE 46 >1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} (A:) Length = 208 Score = 28.7 bits (63), Expect = 1.6 Identities = 3/25 (12%), Positives = 7/25 (28%) Query: 221 TLEKSFRMNVHNISTLLGYPATEFL 245 LE + + ++ L Sbjct: 21 GLEAPVVLGLPRGGVVVADEVARRL 45 >1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} (A:353-541) Length = 189 Score = 27.6 bits (61), Expect = 3.8 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLD-SAYAQVDIAKLNVISK 159 A S +++ L + +G L +L G I + ++ ++ + ++ Sbjct: 46 VADGSRKYVVTLSIDESGGL----VANLNGVSAPIILQSEHAKVHSFHDYELQ-YSALNH 100 Query: 160 LIPSYID 166 ++D Sbjct: 101 TTTLFVD 107 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 27.2 bits (60), Expect = 4.1 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 16/80 (20%) Query: 277 DIRYQEKKLADSVAKIGIAKSDLYPSLS-LNGSIALTHDNSFPGYNTHWSFGPKLYLPIF 335 +++Y++++L A+I K + L L + + Sbjct: 25 NMKYRKRQLVTREAQI---KDWVENELEALKLEAEEIPSEDQNEFLLERT---------- 71 Query: 336 DKGKIKSNIRRAESSAQEQY 355 +I + +AQ+Q+ Sbjct: 72 --REIHNEAESQLRAAQQQW 89 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0738 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,132,074 Number of extensions: 132988 Number of successful extensions: 331 Number of sequences better than 10.0: 1 Number of HSP's gapped: 327 Number of HSP's successfully gapped: 20 Length of query: 452 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 361 Effective length of database: 1,879,794 Effective search space: 678605634 Effective search space used: 678605634 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.3 bits)