RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer
membrane efflux protein) [Candidatus Liberibacter asiaticus str.
psy62]
         (452 letters)



>1yc9_A VCEC, multidrug resistance protein; outer membrane protein;
           HET: BOG; 1.80A {Vibrio cholerae} (A:1-69,A:115-283)
          Length = 238

 Score =  111 bits (279), Expect = 1e-25
 Identities = 41/249 (16%), Positives = 97/249 (38%), Gaps = 37/249 (14%)

Query: 52  WWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPN 111
           WW+ + D  LN L++ ALQ + ++  A  R+  A+       A                 
Sbjct: 26  WWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGA----------------- 68

Query: 112 LKTNSTGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHF 170
                           ++G+ R  + ++ + L +A A+   A+L + + +  +Y +    
Sbjct: 69  ----------------IWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARL 112

Query: 171 KERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNV 230
                  H  L +  K +EL   ++  G  +  S+ + +A   S+E+++  +++S ++  
Sbjct: 113 YANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQK 172

Query: 231 HNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVA 290
           + ++ L+G            +  +        +       L+ +R DI     +   +  
Sbjct: 173 NALAALVGQGPDRAA---SIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQ 229

Query: 291 KIGIAKSDL 299
           ++GIA++  
Sbjct: 230 QVGIAQAQF 238


>3d5k_A OPRM, outer membrane protein OPRM; channel,
           beta-alpha-barrel, antibiotic resistance, lipoprotein,
           palmitate, transmembrane, transport; 2.40A {Pseudomonas
           aeruginosa} PDB: 1wp1_A (A:44-85,A:128-296)
          Length = 211

 Score =  106 bits (266), Expect = 5e-24
 Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 35/245 (14%)

Query: 56  FNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTN 115
           F D  L +L+ +AL+ N  +  A   + A +      RADLF                  
Sbjct: 1   FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLF------------------ 42

Query: 116 STGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERI 174
                       LFG+ R   + +L    +       A+  +++ +  +Y+  +  + ++
Sbjct: 43  ------------LFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQL 90

Query: 175 SIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNIS 234
            +    L  Y+K+ +L+   +  G  S L L + +  ++   + +    +    + + + 
Sbjct: 91  QLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALV 150

Query: 235 TLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGI 294
            LLG      L     Q       L   +  G+P+DL++ RPDI   E +L  + A IG 
Sbjct: 151 LLLGSGIPANL----PQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGA 206

Query: 295 AKSDL 299
           A++  
Sbjct: 207 ARAAF 211


>1yc9_A VCEC, multidrug resistance protein; outer membrane protein;
           HET: BOG; 1.80A {Vibrio cholerae} (A:323-442)
          Length = 120

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 24/115 (20%), Positives = 56/115 (48%)

Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397
           G+++  +  AE+  QE    +  T++ A+ E+ + +TS    +  + K + AV+  ++++
Sbjct: 3   GRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQAL 62

Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
            ++   Y+ G  + LD+L  E +    +  L   + +     + L  A+G G+  
Sbjct: 63  HIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 117


>1ek9_A Outer membrane protein TOLC; integral membrane protein,
           alpha helical barrel, beta barrel; 2.10A {Escherichia
           coli} (A:203-243,A:295-406)
          Length = 153

 Score = 80.1 bits (197), Expect = 5e-16
 Identities = 18/111 (16%), Positives = 49/111 (44%)

Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397
           G + S +++A+ +        +    + ++ V ++  +IN     +   + AV   + S+
Sbjct: 43  GXVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSL 102

Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448
                 Y  G  +++D+LD        + +L+ A+     + +++  A+G+
Sbjct: 103 DAXEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGT 153


>3d5k_A OPRM, outer membrane protein OPRM; channel,
           beta-alpha-barrel, antibiotic resistance, lipoprotein,
           palmitate, transmembrane, transport; 2.40A {Pseudomonas
           aeruginosa} PDB: 1wp1_A (A:336-449)
          Length = 114

 Score = 80.0 bits (197), Expect = 5e-16
 Identities = 23/112 (20%), Positives = 50/112 (44%)

Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397
           G +++++  A+         +++ +  A +EV + L +     + +   +  V+   +  
Sbjct: 3   GSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYY 62

Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSG 449
            L+   YR G  + L +LD +R+    +  L   +     S V+LY A+G G
Sbjct: 63  QLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGG 114


>1ek9_A Outer membrane protein TOLC; integral membrane protein,
           alpha helical barrel, beta barrel; 2.10A {Escherichia
           coli} (A:1-34,A:78-202,A:407-428)
          Length = 181

 Score = 68.8 bits (167), Expect = 1e-12
 Identities = 13/145 (8%), Positives = 40/145 (27%), Gaps = 2/145 (1%)

Query: 132 RRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELS 191
            R +                 +  +I     +Y +  +  + +S      +   + ++ +
Sbjct: 38  WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQT 97

Query: 192 HLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251
             +F  G  +   +    A+  ++ ++  T   +    V  +  + G    E        
Sbjct: 98  TQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPE--LAALNV 155

Query: 252 SNNFQPNLYIPINIGIPADLIRNRP 276
            N       +       +  +   P
Sbjct: 156 ENFKLNEQDLLALNNALSKPVSTNP 180


>1yc9_A VCEC, multidrug resistance protein; outer membrane protein;
           HET: BOG; 1.80A {Vibrio cholerae} (A:70-114,A:284-322)
          Length = 84

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 263 INIGIPADLIRNRPDIRYQEKKLADSVAKIGIAK------SDLYPSLSLNGSI---ALTH 313
            ++G+ A    ++   RYQ     D     G          D YP ++L+  I   A   
Sbjct: 3   FDLGLAASATESKVSERYQSATPPDGWNDYGTLTLNFQYDFDFYPDVTLSAFIGYQAFGL 62

Query: 314 DNSFPGYNTHWSFGPKLYLPIF 335
           D+ F   N   + GP +YLP+F
Sbjct: 63  DHLFDSGNDAGAIGPAIYLPLF 84


>3d5k_A OPRM, outer membrane protein OPRM; channel,
           beta-alpha-barrel, antibiotic resistance, lipoprotein,
           palmitate, transmembrane, transport; 2.40A {Pseudomonas
           aeruginosa} PDB: 1wp1_A (A:86-127,A:297-335)
          Length = 81

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 290 AKIGIAKSDL-YPSLSLNGSI---ALTHDNSFPGYNTHWSFGPKLYLPIF 335
             +G    +L +PS+SL  +    +      F   +  W F P + LPIF
Sbjct: 32  VTLGTTAWELDFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIF 81


>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A
           {Vibrio cholerae} (A:1-215)
          Length = 215

 Score = 32.2 bits (73), Expect = 0.16
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKL 160
           YA+ + R +P +  +S+G L     ++  GQ      +     + Y + ++  L   +  
Sbjct: 112 YANGTQRVLPIISLDSSGNL----VVEFEGQTGRTVLATGTAATEYHKFELVFLPGSNPS 167

Query: 161 IPSYID 166
              Y D
Sbjct: 168 ASFYFD 173


>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P;
           3.00A {Bacillus caldolyticus} (A:9-69)
          Length = 61

 Score = 28.9 bits (65), Expect = 1.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQ 251
           K FR  V  ++TL+ +  T  L   + +
Sbjct: 19  KEFRELVDEVATLMAFEITRDLPLEEVE 46


>1wd5_A Hypothetical protein TT1426; structural genomics, riken
           structural genomics/proteomics initiative, RSGI, unknown
           function; HET: MES; 2.00A {Thermus thermophilus} (A:)
          Length = 208

 Score = 28.7 bits (63), Expect = 1.6
 Identities = 3/25 (12%), Positives = 7/25 (28%)

Query: 221 TLEKSFRMNVHNISTLLGYPATEFL 245
            LE    + +     ++       L
Sbjct: 21  GLEAPVVLGLPRGGVVVADEVARRL 45


>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A
           {Vibrio cholerae} (A:353-541)
          Length = 189

 Score = 27.6 bits (61), Expect = 3.8
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLD-SAYAQVDIAKLNVISK 159
            A  S +++  L  + +G L      +L G    I     +    ++   ++   + ++ 
Sbjct: 46  VADGSRKYVVTLSIDESGGL----VANLNGVSAPIILQSEHAKVHSFHDYELQ-YSALNH 100

Query: 160 LIPSYID 166
               ++D
Sbjct: 101 TTTLFVD 107


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 16/80 (20%)

Query: 277 DIRYQEKKLADSVAKIGIAKSDLYPSLS-LNGSIALTHDNSFPGYNTHWSFGPKLYLPIF 335
           +++Y++++L    A+I   K  +   L  L              +    +          
Sbjct: 25  NMKYRKRQLVTREAQI---KDWVENELEALKLEAEEIPSEDQNEFLLERT---------- 71

Query: 336 DKGKIKSNIRRAESSAQEQY 355
              +I +       +AQ+Q+
Sbjct: 72  --REIHNEAESQLRAAQQQW 89


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,132,074
Number of extensions: 132988
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 20
Length of query: 452
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 361
Effective length of database: 1,879,794
Effective search space: 678605634
Effective search space used: 678605634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)