RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer
membrane efflux protein) [Candidatus Liberibacter asiaticus str.
psy62]
(452 letters)
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic resistance, lipoprotein, palmitate,
transmembrane, transport; 2.40A {Pseudomonas aeruginosa}
PDB: 1wp1_A
Length = 474
Score = 182 bits (461), Expect = 2e-46
Identities = 96/457 (21%), Positives = 190/457 (41%), Gaps = 27/457 (5%)
Query: 18 CTVGPEYTKPHMPLLPTQFSIG------NSKNLINIDTLKWWESFNDTSLNKLVKIALQQ 71
C++ P+Y +P P+ + G + + W E F D L +L+ +AL+
Sbjct: 1 CSLIPDYQRPEAPV-AAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALEN 59
Query: 72 NLTILQATERINAAKENILSVRADLFPSSYASISH---RFIPNLKTNSTGQLDSDWKIDL 128
N + A + A + RADLFP S R +L T + + S + + L
Sbjct: 60 NRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTL 119
Query: 129 ----------FGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAH 178
R + +L + A+ +++ + +Y+ + + ++ +
Sbjct: 120 GTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTK 179
Query: 179 QILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLG 238
L Y+K+ +L+ + G S L L + + ++ + + + + + + LLG
Sbjct: 180 DTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLG 239
Query: 239 YPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSD 298
L + G+P+DL++ RPDI E +L + A IG A++
Sbjct: 240 SGIPANLPQGLGLDQTLLT----EVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAA 295
Query: 299 LYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQY 355
+PS+SL G+++ F + W F P + LPIF G +++++ A+
Sbjct: 296 FFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINV 355
Query: 356 ITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415
+++ + A +EV + L + + + + V+ + L+ YR G + L +L
Sbjct: 356 AQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLL 415
Query: 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
D +R+ + L + S V+LY A+G G+N
Sbjct: 416 DAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQ 452
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
helical barrel, beta barrel; 2.10A {Escherichia coli}
SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A
Length = 428
Score = 177 bits (448), Expect = 6e-45
Identities = 53/408 (12%), Positives = 136/408 (33%), Gaps = 24/408 (5%)
Query: 60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPS-------SYASISHRFIPNL 112
+L ++ + A N + ++ +AA E I R+ L P +Y++
Sbjct: 2 NLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGIN 61
Query: 113 KTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKE 172
++ L I + R + + +I +Y + + +
Sbjct: 62 SNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAID 121
Query: 173 RISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHN 232
+S + + ++ + +F G + + A+ ++ ++ T + V
Sbjct: 122 VLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQ 181
Query: 233 ISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKI 292
+ + G E + +P + + + + + +I
Sbjct: 182 LRQITGNYYPELAALNVENFKTDKP----QPVNALLKEAEKRNLSLLQARLSQDLAREQI 237
Query: 293 GIAKSDLYPSLSLNGSIALTHDNS-------------FPGYNTHWSFGPKLYLPIFDKGK 339
A+ P+L L S ++ + G LPI+ G
Sbjct: 238 RQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGM 297
Query: 340 IKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSL 399
+ S +++A+ + + + ++ V ++ +IN + + AV + S+
Sbjct: 298 VNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDA 357
Query: 400 SMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIG 447
Y G +++D+LD + +L+ A+ + +++ A+G
Sbjct: 358 MEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALG 405
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET:
BOG; 1.80A {Vibrio cholerae}
Length = 442
Score = 148 bits (374), Expect = 2e-36
Identities = 82/417 (19%), Positives = 179/417 (42%), Gaps = 19/417 (4%)
Query: 52 WWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISH----- 106
WW+ + D LN L++ ALQ + ++ A R+ A+ A + S
Sbjct: 26 WWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGAIRSFDLGLAASATESKV 85
Query: 107 -------RFIPNLKTNSTGQLDSDWKIDLFGQR-RHIESSLANLDSAYAQVDIAKLNVIS 158
T L+ + D +G+ + ++ + L +A A+ A+L + +
Sbjct: 86 SERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMIST 145
Query: 159 KLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESD 218
+ +Y + H L + K +EL ++ G + S+ + +A S+E++
Sbjct: 146 SIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAE 205
Query: 219 IPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDI 278
+ +++S ++ + ++ L+G + + + L+ +R DI
Sbjct: 206 LLGIQESIQLQKNALAALVGQGPDRAA---SIEEPHITLTSRYGLPSEAGVGLLGHRADI 262
Query: 279 RYQEKKLADSVAKIGIAKSDLYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIF 335
+ + ++GIA++ YP ++L+ G A D+ F N + GP +YLP+F
Sbjct: 263 TAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLF 322
Query: 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKK 395
G+++ + AE+ QE + T++ A+ E+ + +TS + + K + AV+ ++
Sbjct: 323 TGGRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQ 382
Query: 396 SMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
++ ++ Y+ G + LD+L E + + L + + + L A+G G+
Sbjct: 383 ALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 439
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 60.0 bits (145), Expect = 1e-09
Identities = 59/310 (19%), Positives = 96/310 (30%), Gaps = 139/310 (44%)
Query: 13 VLLAGCTVGPEYTKPHMPLLPTQFS--IGNSKNLIN---I---DTLKWWESFNDTSLNKL 64
+L G T G E L + G+S+ L+ I D+ WESF + K
Sbjct: 255 LL--GFTPG-E--------LRSYLKGATGHSQGLVTAVAIAETDS---WESFFVSVR-KA 299
Query: 65 VKIAL-------QQ-----NL--TILQATERINAAKEN-------ILSVRADLFPSSYAS 103
+ + L + +L +IL+ + EN +LS+ +L +
Sbjct: 300 ITV-LFFIGVRCYEAYPNTSLPPSILEDSL------ENNEGVPSPMLSIS-NL---TQEQ 348
Query: 104 ISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLAN----------LDSAYAQVDIAK 153
+ ++ KTNS L + + +E SL N S Y
Sbjct: 349 V-QDYVN--KTNS--HLPAG---------KQVEISLVNGAKNLVVSGPPQSLYG------ 388
Query: 154 LNVISKLI--PSYID-AR-HFKER-ISIAHQIL--------------------DLYKKNI 188
LN+ + PS +D +R F ER + +++ L DL K N+
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 189 EL--SHLKF----TQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTL------ 236
++ T L L I + I L
Sbjct: 449 SFNAKDIQIPVYDTF--DGS-DLRVLSGSI------SERI---VDC----IIRLPVKWET 492
Query: 237 -LGYPATEFL 245
+ AT L
Sbjct: 493 TTQFKATHIL 502
Score = 57.6 bits (139), Expect = 5e-09
Identities = 88/511 (17%), Positives = 151/511 (29%), Gaps = 185/511 (36%)
Query: 59 TSLNKLVKIALQQNLTILQAT--ERINAAKENILSVRADLFPSSYASISHRFIPNLKTNS 116
L LV A + LQ + + E + D P++ A + +F+
Sbjct: 18 HVL--LVPTASFFIASQLQEQFNKILPEPTEGFAA---DDEPTTPAELVGKFL------- 65
Query: 117 TGQLDSDWKIDLFGQRRHI-ESSLANLDSAY-AQVDI----AKLNVIS--------KLIP 162
G + S + GQ + L ++ Y DI AKL + +LI
Sbjct: 66 -GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 163 SYIDARHF-KERISIAHQILDLYK----KNIELSHLKFT----QGATSK----L------ 203
+YI AR K L++ N +L QG T L
Sbjct: 125 NYITARIMAKRPFDKKSNSA-LFRAVGEGNAQL----VAIFGGQGNTDDYFEELRDLYQT 179
Query: 204 ------SLVKLEAE-IKSIESDIPTLEKSFR--MNVHN-ISTLLGYPATEFLHYMQKQSN 253
L+K AE + + EK F +N+ + P ++L
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-------- 231
Query: 254 NFQPNLYIPIN---IGI----------------PADLIRNRPDIRYQEKKLADS------ 288
L IPI+ IG+ P +L R+ L +
Sbjct: 232 -----LSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSY---------LKGATGHSQG 276
Query: 289 -VAKIGIAKSDLYPSLSLNGSIALTHDNS--------FPGYNTHWSFGPKLYLPIFDKGK 339
V + IA++D + S + F G + ++ P LP
Sbjct: 277 LVTAVAIAETDSWESF---------FVSVRKAITVLFFIGVRCYEAY-PNTSLP------ 320
Query: 340 IKSNIRRAESSAQEQYITWQETVLNA-IKEVENALTSIN----EDKKIVTKL----QHAV 390
+I E + ++ N ++V++ + N K++ L ++ V
Sbjct: 321 --PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 391 ------ELH---------KKSMSL--SMINYRQGR-----YSLLDI--------LDIERA 420
L+ K L S I + + R L + L A
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKFSNRFLPVASPFHSHLL--VPA 435
Query: 421 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYN 451
+ + DL D+ I + Y+
Sbjct: 436 SDLINKDLVKNNVSFNAK--DIQIPV---YD 461
Score = 35.7 bits (82), Expect = 0.021
Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 80/277 (28%)
Query: 169 HFKERISIAHQILDLYKKN-IELS-HLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSF 226
HFK+ + ILD+ N + L+ H +G + + + E ++ + T EK F
Sbjct: 1652 HFKD--TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLKT-EKIF 1707
Query: 227 R-MNVHNIS-------TLLGYPATEF----LHYMQKQSNNFQPNLYIPINIG-IPADLIR 273
+ +N H+ S LL AT+F L M+K + F+ +L + G IPAD
Sbjct: 1708 KEINEHSTSYTFRSEKGLLS--ATQFTQPALTLMEKAA--FE-DLK---SKGLIPADATF 1759
Query: 274 NRPDI-RYQE-KKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLY 331
+ Y LAD ++ + + Y +++ +A+ D G Y
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ--VAVPRD----------ELGRSNY 1807
Query: 332 LPIFDKGKIKSNIRR-AESSAQE--QYIT--------W-----------QETV----LNA 365
G I N R A S +QE QY+ W Q+ V L A
Sbjct: 1808 ------GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 366 IKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMI 402
+ V N L I K + +LQ KS+SL +
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQ-------KSLSLEEV 1891
Score = 33.0 bits (75), Expect = 0.13
Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 23/159 (14%)
Query: 17 GCTVGPEYTKPHMPLL-PTQFSIGNSKNLINID------TLKWWE---SFNDT-SLNKLV 65
G ++T+P + L+ F SK LI D +L + S D S+ LV
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV 1783
Query: 66 KIALQQNLTILQATERINAAKEN--ILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSD 123
++ + +T+ A R + N ++++ +S++ + +++ TG
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG----- 1838
Query: 124 WKIDLFG----QRRHIES-SLANLDSAYAQVDIAKLNVI 157
W +++ ++++ + L LD+ ++ KL I
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 31.8 bits (72), Expect = 0.36
Identities = 30/167 (17%), Positives = 44/167 (26%), Gaps = 59/167 (35%)
Query: 302 SLSLN-GSIA---LTHDNSFPGYNTHW-SFGPKLYLP---IFDKGKIKSNI--------- 344
L+L+ GS+ L SF + F L P + +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 345 --RRAESSAQEQYITWQETVLNAI-KEVENALTSINEDKKIVTKLQHAVELHKKSMSLSM 401
E S Q+ + VLN E EN N+ I HA+
Sbjct: 68 VSSLVEPSKVGQF----DQVLNLCLTEFENCYLEGND---I-----HAL-AA-------- 106
Query: 402 INYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448
LL D ++L K+Y+ I
Sbjct: 107 --------KLLQENDTTLV----------KTKELIKNYITARIMAKR 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.3 bits (72), Expect = 0.25
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 202 KLSLVKLEAEIKSIESD-IP------TLE 223
K +L KL+A +K D P T+E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.6 bits (65), Expect = 1.5
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Query: 66 KIALQQNLTILQATERI---NAAKENILSVRADL 96
K AL++ LQA+ ++ ++A L+++A +
Sbjct: 19 KQALKK----LQASLKLYADDSAPA--LAIKATM 46
Score = 29.2 bits (64), Expect = 1.7
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 10/29 (34%)
Query: 379 DKKIVTKLQHAVELH----------KKSM 397
+K+ + KLQ +++L+ K +M
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
Score = 29.2 bits (64), Expect = 2.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 13/32 (40%)
Query: 283 KKLADSVAKIGIAKSDLY-----PSLSLNGSI 309
KKL S+ K LY P+L++ ++
Sbjct: 23 KKLQASL------K--LYADDSAPALAIKATM 46
Score = 27.3 bits (59), Expect = 7.0
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 305 LNGSIALTHDNSFPG 319
L S+ L D+S P
Sbjct: 25 LQASLKLYADDSAPA 39
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.3 bits (70), Expect = 0.40
Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 82/243 (33%)
Query: 2 NILRAIFSLFIVLLAGCTV------GPEYTKPH---MPLLPTQFSIGN----SKNLINID 48
NILR + GC G E T+P +P+ P + G S++ ++++
Sbjct: 599 NILR---------MMGCVKKQKSARGIE-TRPAQVILPMSPNHGTFGGDGMYSESKLSLE 648
Query: 49 TL-KWWESFNDTSLNKLVKIA-----------LQQNLTILQATERIN----AAKE---NI 89
TL W S ++ N+L + N I + E++ + KE N+
Sbjct: 649 TLFNRWHS--ESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNL 706
Query: 90 LS--------------VRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-- 133
L V ADL + +F+P LK T +L + ++ R+
Sbjct: 707 LGLLTPEVVELCQKSPVMADL------NGGLQFVPELK-EFTAKLRKEL-VETSEVRKAV 758
Query: 134 HIESSLA-------NLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIA----HQILD 182
IE++L + D+AYAQV+I I P + + +K+ IA +LD
Sbjct: 759 SIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFP---ELKPYKQVKQIAPAELEGLLD 815
Query: 183 LYK 185
L +
Sbjct: 816 LER 818
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio
cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A*
1kit_A 2w68_A*
Length = 781
Score = 30.8 bits (69), Expect = 0.71
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 92 VRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDI 151
+ + + YA+ + R +P + +S+G L ++ GQ + + Y + ++
Sbjct: 103 LSGGMITNYYANGTQRVLPIISLDSSGNL----VVEFEGQTGRTVLATGTAATEYHKFEL 158
Query: 152 AKLNVISKLIPSYIDARHFKERISIA 177
L + Y D + ++ I
Sbjct: 159 VFLPGSNPSASFYFDGKLIRDNIQPT 184
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 29.1 bits (65), Expect = 2.1
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 211 EIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251
+ +I D T ++ F + LL A L + +K+
Sbjct: 46 AMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKE 86
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics,
JCSG, PSI, protein structure initiative; HET: U5P; 2.30A
{Thermotoga maritima} SCOP: c.61.1.1
Length = 221
Score = 28.7 bits (64), Expect = 2.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQ 256
K FR + I+ LL Y AT L + +
Sbjct: 39 KEFRELLREITLLLAYEATRHLKCEEVEVETPI 71
>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A
{Bacillus stearothermophilus} SCOP: c.89.1.1 PDB:
4pfk_A* 6pfk_A 1mto_A*
Length = 319
Score = 28.5 bits (63), Expect = 3.2
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 379 DKKIVTKL-QHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428
D+ + ++L AVEL + + + + DI + ++ +
Sbjct: 260 DRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTIDQRM 310
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus
bulgaricus, transferase; 1.85A {Lactobacillus
delbrueckii subsp}
Length = 319
Score = 28.5 bits (63), Expect = 3.4
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 379 DKKIVTKL-QHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428
D+ + +KL AV L + + G+ + DILD+ + + + DL
Sbjct: 260 DRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYDL 310
>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 2.80A {Escherichia coli}
Length = 208
Score = 28.4 bits (63), Expect = 3.8
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIR 279
K FR + +LL Y AT L + + + I I I P +R
Sbjct: 26 KRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEID---QIKGKKITVVPILR 78
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibiotic; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 27.9 bits (61), Expect = 4.6
Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 9/144 (6%)
Query: 272 IRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLY 331
+ DI + ++ S L + + I H + L
Sbjct: 80 CVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLA 139
Query: 332 LPIFDK---------GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKI 382
+ D G + E+ I V I+ S++ +
Sbjct: 140 VVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGH 199
Query: 383 VTKLQHAVELHKKSMSLSMINYRQ 406
++ A E + + + R+
Sbjct: 200 GVRVVTADEFGELGVGGTADLIRE 223
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 27.8 bits (62), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQ 251
++FR + I+ L+GY T L K+
Sbjct: 34 RTFRELLREITLLMGYEITRNLPITTKR 61
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics; 2.10A {Thermus
thermophilus HB8} SCOP: c.61.1.1
Length = 208
Score = 28.0 bits (62), Expect = 4.9
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIP 268
D T K FR ++ L+ Y A L + + + G
Sbjct: 20 DKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKK 70
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 27.7 bits (61), Expect = 5.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251
D T K FR V ++TL+ + T L + +
Sbjct: 21 DKNTGTKEFRELVDEVATLMAFEITRDLPLEEVE 54
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP,
caseinolytic protease, protease TI, heat shock protein
F21.5, hydrolase; 1.90A {Escherichia coli} SCOP:
c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A
2zl3_A
Length = 193
Score = 27.1 bits (60), Expect = 7.5
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 8 FSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINI-DTLKWWESFNDTSLNKLVK 66
S+ LL G + P+ ++ Q G +I + +
Sbjct: 96 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAL 155
Query: 67 IALQQNLTILQATER 81
Q I + TER
Sbjct: 156 HTGQSLEQIERDTER 170
>2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 2.15A {Aquifex aeolicus}
Length = 208
Score = 27.3 bits (60), Expect = 7.7
Identities = 6/53 (11%), Positives = 16/53 (30%)
Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRP 276
+ R + + +L Y A + + +K+ + N +
Sbjct: 25 EKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILR 77
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,638,336
Number of extensions: 161151
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 31
Length of query: 452
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 356
Effective length of database: 3,365,806
Effective search space: 1198226936
Effective search space used: 1198226936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)