RPSBLAST alignment of GI: 254780930 and SCOP domain: d1wp1a_

Alignment
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]} Length = 456
 Score =  175 bits (444), Expect = 6e-45
 Identities = 98/457 (21%), Positives = 192/457 (42%), Gaps = 27/457 (5%)

Query: 18  CTVGPEYTKPHMPLLPTQFSIG------NSKNLINIDTLKWWESFNDTSLNKLVKIALQQ 71
           C++ P+Y +P  P+    +  G           +    + W E F D  L +L+ +AL+ 
Sbjct: 1   CSLIPDYQRPEAPV-AAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALEN 59

Query: 72  NLTILQATERINAAKENILSVRADLFPSSYASISH---RFIPNLKTNSTGQLDSDWKIDL 128
           N  +  A   + A +      RADLFP      S    R   +L T  +  + S + + L
Sbjct: 60  NRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTL 119

Query: 129 ----------FGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAH 178
                        R   + +L    +       A+  +++ +  +Y+  +  + ++ +  
Sbjct: 120 GTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTK 179

Query: 179 QILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLG 238
             L  Y+K+ +L+   +  G  S L L + +  ++   + +    +    + + +  LLG
Sbjct: 180 DTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLG 239

Query: 239 YPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSD 298
                 L     Q       L   +  G+P+DL++ RPDI   E +L  + A IG A++ 
Sbjct: 240 SGIPANL----PQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAA 295

Query: 299 LYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQY 355
            +PS+SL    G+++      F   +  W F P + LPIF  G +++++  A+       
Sbjct: 296 FFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINV 355

Query: 356 ITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415
             +++ +  A +EV + L +     + +   +  V+   +   L+   YR G  + L +L
Sbjct: 356 AQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLL 415

Query: 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
           D +R+    +  L   +     S V+LY A+G G+N 
Sbjct: 416 DAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQ 452

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Outer membrane efflux proteins (OEP)
superfamily: Outer membrane efflux proteins (OEP)
family: Outer membrane efflux proteins (OEP)
domain: Outer membrane protein OprM
species: Pseudomonas aeruginosa [TaxId: 287]