RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer
membrane efflux protein) [Candidatus Liberibacter asiaticus str.
psy62]
         (452 letters)



>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 456

 Score =  175 bits (444), Expect = 6e-45
 Identities = 98/457 (21%), Positives = 192/457 (42%), Gaps = 27/457 (5%)

Query: 18  CTVGPEYTKPHMPLLPTQFSIG------NSKNLINIDTLKWWESFNDTSLNKLVKIALQQ 71
           C++ P+Y +P  P+    +  G           +    + W E F D  L +L+ +AL+ 
Sbjct: 1   CSLIPDYQRPEAPV-AAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALEN 59

Query: 72  NLTILQATERINAAKENILSVRADLFPSSYASISH---RFIPNLKTNSTGQLDSDWKIDL 128
           N  +  A   + A +      RADLFP      S    R   +L T  +  + S + + L
Sbjct: 60  NRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTL 119

Query: 129 ----------FGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAH 178
                        R   + +L    +       A+  +++ +  +Y+  +  + ++ +  
Sbjct: 120 GTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTK 179

Query: 179 QILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLG 238
             L  Y+K+ +L+   +  G  S L L + +  ++   + +    +    + + +  LLG
Sbjct: 180 DTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLG 239

Query: 239 YPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSD 298
                 L     Q       L   +  G+P+DL++ RPDI   E +L  + A IG A++ 
Sbjct: 240 SGIPANL----PQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAA 295

Query: 299 LYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQY 355
            +PS+SL    G+++      F   +  W F P + LPIF  G +++++  A+       
Sbjct: 296 FFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINV 355

Query: 356 ITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415
             +++ +  A +EV + L +     + +   +  V+   +   L+   YR G  + L +L
Sbjct: 356 AQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLL 415

Query: 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
           D +R+    +  L   +     S V+LY A+G G+N 
Sbjct: 416 DAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQ 452


>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux
           pump component {Escherichia coli [TaxId: 562]}
          Length = 428

 Score =  120 bits (300), Expect = 2e-28
 Identities = 53/409 (12%), Positives = 134/409 (32%), Gaps = 24/409 (5%)

Query: 60  SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPS-------SYASISHRFIPNL 112
           +L ++ + A   N  + ++    +AA E I   R+ L P        +Y++         
Sbjct: 2   NLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGIN 61

Query: 113 KTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKE 172
              ++  L     I    + R +                 +  +I     +Y +  +  +
Sbjct: 62  SNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAID 121

Query: 173 RISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHN 232
            +S      +   + ++ +  +F  G  +   +    A+  ++ ++  T   +    V  
Sbjct: 122 VLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQ 181

Query: 233 ISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKI 292
           +  + G    E      +     +P     +      +  +    +         +  +I
Sbjct: 182 LRQITGNYYPELAALNVENFKTDKPQPVNALLK----EAEKRNLSLLQARLSQDLAREQI 237

Query: 293 GIAKSDLYPSLSLNGSI-------------ALTHDNSFPGYNTHWSFGPKLYLPIFDKGK 339
             A+    P+L L  S                               G    LPI+  G 
Sbjct: 238 RQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGM 297

Query: 340 IKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSL 399
           + S +++A+ +        +    + ++ V ++  +IN     +   + AV   + S+  
Sbjct: 298 VNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDA 357

Query: 400 SMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448
               Y  G  +++D+LD        + +L+ A+     + +++  A+G+
Sbjct: 358 MEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGT 406


>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal
           and insertion domains {Vibrio cholerae [TaxId: 666]}
          Length = 192

 Score = 33.0 bits (75), Expect = 0.055
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKL 160
           YA+ + R +P +  +S+G L     ++  GQ      +     + Y + ++  L   +  
Sbjct: 88  YANGTQRVLPIISLDSSGNL----VVEFEGQTGRTVLATGTAATEYHKFELVFLPGSNPS 143

Query: 161 IPSYID 166
              Y D
Sbjct: 144 ASFYFD 149


>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
           [TaxId: 1394]}
          Length = 208

 Score = 30.3 bits (68), Expect = 0.34
 Identities = 12/59 (20%), Positives = 20/59 (33%)

Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRP 276
           D  T  K FR  V  ++TL+ +  T  L   + +           +  G    +I    
Sbjct: 20  DKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIPILR 78


>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
           [TaxId: 2336]}
          Length = 210

 Score = 29.2 bits (65), Expect = 0.76
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQ 256
           D  T  K FR  +  I+ LL Y AT  L   + +     
Sbjct: 22  DKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPI 60


>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 319

 Score = 28.5 bits (63), Expect = 1.0
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 379 DKKIVTKL-QHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428
           D+ + ++L   AVEL  +      +  +  +    DI +       ++  +
Sbjct: 260 DRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTIDQRM 310


>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
           5811]}
          Length = 224

 Score = 28.0 bits (62), Expect = 1.8
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIG 266
           D  T ++ F      +  LL   A   L + +K+        Y  ++  
Sbjct: 34  DKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFY 82


>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
           [TaxId: 274]}
          Length = 208

 Score = 27.2 bits (60), Expect = 2.8
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251
           D  T  K FR     ++ L+ Y A   L   +  
Sbjct: 20  DKRTGPKDFRELAEEVAMLMAYEAMRDLELEETT 53


>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
          {Desulfitobacterium hafniense [TaxId: 49338]}
          Length = 149

 Score = 26.3 bits (58), Expect = 4.7
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 19/58 (32%)

Query: 12 IVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTSLNKLVKIAL 69
          I +L   T+G                      LI  +T ++   F+ T    + +  +
Sbjct: 58 IQVLNKATIGR-------------------HALIIEETHRYMYQFHFTGTQDIHQFTV 96


>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 215

 Score = 26.5 bits (58), Expect = 4.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQ 251
            +FR N+  +  +LGY  +  L Y   +
Sbjct: 25  INFRKNLVRLGRILGYEISNTLDYEIVE 52


>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal
           and insertion domains {Vibrio cholerae [TaxId: 666]}
          Length = 197

 Score = 26.1 bits (57), Expect = 6.3
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLD-SAYAQVDIAKLNVISK 159
            A  S +++  L  + +G L      +L G    I     +    ++   ++   + ++ 
Sbjct: 52  VADGSRKYVVTLSIDESGGL----VANLNGVSAPIILQSEHAKVHSFHDYELQ-YSALNH 106

Query: 160 LIPSYID 166
               ++D
Sbjct: 107 TTTLFVD 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,577,600
Number of extensions: 70649
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 19
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)