BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer
membrane efflux protein) [Candidatus Liberibacter asiaticus str.
psy62]
         (452 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/452 (100%), Positives = 452/452 (100%)

Query: 1   MNILRAIFSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTS 60
           MNILRAIFSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTS
Sbjct: 1   MNILRAIFSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTS 60

Query: 61  LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQL 120
           LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQL
Sbjct: 61  LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQL 120

Query: 121 DSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQI 180
           DSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQI
Sbjct: 121 DSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQI 180

Query: 181 LDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYP 240
           LDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYP
Sbjct: 181 LDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYP 240

Query: 241 ATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLY 300
           ATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLY
Sbjct: 241 ATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLY 300

Query: 301 PSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE 360
           PSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE
Sbjct: 301 PSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE 360

Query: 361 TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERA 420
           TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERA
Sbjct: 361 TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERA 420

Query: 421 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
           TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP
Sbjct: 421 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452


>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 890

 Score = 28.9 bits (63), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 46  NIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASIS 105
           N +T K    ++D  LN+  KI  +Q L I+          ENIL + AD+   +  +I 
Sbjct: 635 NFETRKNLLKYDDV-LNEQRKIIFEQRLEIIDT--------ENILEIIADMRHDTLHNIV 685

Query: 106 HRFIPN 111
            + IPN
Sbjct: 686 EKCIPN 691


>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score = 28.5 bits (62), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 243 EFLHYMQKQSNNFQPNLY-IPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYP 301
           ++ + +Q+ +  F P  + +P NI  PA +     D RY    L   VA+I I    L+P
Sbjct: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGM-----DNRYC--SLTFDVARIRIGLMLLFP 149

Query: 302 S--------LSLNGSIALTHDNSFPGYNTHWS 325
                    L   G +A    N F  Y+ HW 
Sbjct: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 28.1 bits (61), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 157 ISKLIPSYIDARHFKERISIAHQILDLYKKNIEL--SHLKFTQGATS------KLSLVKL 208
           ++KL+ +Y+     KE+ ++    + + K   E   S+  F +G+T       KL +VK 
Sbjct: 56  LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115

Query: 209 EAEIK-SIESDIPTLEKSFRMNVHNISTLLGYPATEFLH 246
             +I  +I   +   EK F  +++N S  LG  AT F++
Sbjct: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154


>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 404

 Score = 26.2 bits (56), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 133 RHIESSLANLDSAYAQVDIAK-----LNVISKLIPSYIDAR-HFKERISIAHQILDLYKK 186
           R I+    ++   Y   D+ +     +N+   L+P     R HF E +   H  + +Y+K
Sbjct: 57  RGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRK 116

Query: 187 NIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLH 246
            IE        G   +   + L A   ++ES +   ++    N+ +   L    A  F H
Sbjct: 117 KIEF-------GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSH 169

Query: 247 -YMQKQSNNFQP-NLY 260
             +   ++NF P NLY
Sbjct: 170 GCIIVMTSNFIPENLY 185


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score = 25.4 bits (54), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 10/50 (20%)

Query: 288 SVAKIGIAKSDLYPSLSLNGSIALTHDNSF----------PGYNTHWSFG 327
            + +I  AK++++  L   G+I L +D+SF           G  T +SFG
Sbjct: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 25.0 bits (53), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 75  ILQATERINAAKENILSVRADLFP 98
           I+  ++R +A +E++LSV  D FP
Sbjct: 382 IISGSKRSDAVEESLLSVIGDEFP 405


>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 24.3 bits (51), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 165 IDARHFKERISIA-HQILDLYKKN--------IELSHLKFTQGATSKLSLVKLEAEIKSI 215
           +DA    E + I+ ++I DL K++        I  S L   QG   +L    + A +K++
Sbjct: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193

Query: 216 ESDIPTLEKS----FRMNVHNISTLLG 238
           ++ IPT ++S    F M++     + G
Sbjct: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEG 220


>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 24.3 bits (51), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 165 IDARHFKERISIA-HQILDLYKKN--------IELSHLKFTQGATSKLSLVKLEAEIKSI 215
           +DA    E + I+ ++I DL K++        I  S L   QG   +L    + A +K++
Sbjct: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193

Query: 216 ESDIPTLEKS----FRMNVHNISTLLG 238
           ++ IPT ++S    F M++     + G
Sbjct: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEG 220


>537021.9.peg.472_1 
          Length = 369

 Score = 23.5 bits (49), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 358 WQETVLNAIKEVENALTSINEDKKIVTKLQHAVEL 392
           WQ  +L  I E+E     +   + ++ +L HAV+L
Sbjct: 318 WQ-MILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.133    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,850
Number of Sequences: 1233
Number of extensions: 11417
Number of successful extensions: 33
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 13
length of query: 452
length of database: 328,796
effective HSP length: 77
effective length of query: 375
effective length of database: 233,855
effective search space: 87695625
effective search space used: 87695625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)