BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] (452 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/452 (100%), Positives = 452/452 (100%) Query: 1 MNILRAIFSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTS 60 MNILRAIFSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTS Sbjct: 1 MNILRAIFSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTS 60 Query: 61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQL 120 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQL Sbjct: 61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQL 120 Query: 121 DSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQI 180 DSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQI Sbjct: 121 DSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQI 180 Query: 181 LDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYP 240 LDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYP Sbjct: 181 LDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYP 240 Query: 241 ATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLY 300 ATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLY Sbjct: 241 ATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLY 300 Query: 301 PSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE 360 PSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE Sbjct: 301 PSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQE 360 Query: 361 TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERA 420 TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERA Sbjct: 361 TVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERA 420 Query: 421 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP Sbjct: 421 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 28.9 bits (63), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%) Query: 46 NIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASIS 105 N +T K ++D LN+ KI +Q L I+ ENIL + AD+ + +I Sbjct: 635 NFETRKNLLKYDDV-LNEQRKIIFEQRLEIIDT--------ENILEIIADMRHDTLHNIV 685 Query: 106 HRFIPN 111 + IPN Sbjct: 686 EKCIPN 691 >gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 28.5 bits (62), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%) Query: 243 EFLHYMQKQSNNFQPNLY-IPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYP 301 ++ + +Q+ + F P + +P NI PA + D RY L VA+I I L+P Sbjct: 97 KYYNVLQRPTELFCPVFHTLPENITPPAGM-----DNRYC--SLTFDVARIRIGLMLLFP 149 Query: 302 S--------LSLNGSIALTHDNSFPGYNTHWS 325 L G +A N F Y+ HW Sbjct: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181 >gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 28.1 bits (61), Expect = 0.30, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%) Query: 157 ISKLIPSYIDARHFKERISIAHQILDLYKKNIEL--SHLKFTQGATS------KLSLVKL 208 ++KL+ +Y+ KE+ ++ + + K E S+ F +G+T KL +VK Sbjct: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 Query: 209 EAEIK-SIESDIPTLEKSFRMNVHNISTLLGYPATEFLH 246 +I +I + EK F +++N S LG AT F++ Sbjct: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Query: 133 RHIESSLANLDSAYAQVDIAK-----LNVISKLIPSYIDAR-HFKERISIAHQILDLYKK 186 R I+ ++ Y D+ + +N+ L+P R HF E + H + +Y+K Sbjct: 57 RGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRK 116 Query: 187 NIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLH 246 IE G + + L A ++ES + ++ N+ + L A F H Sbjct: 117 KIEF-------GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSH 169 Query: 247 -YMQKQSNNFQP-NLY 260 + ++NF P NLY Sbjct: 170 GCIIVMTSNFIPENLY 185 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 10/50 (20%) Query: 288 SVAKIGIAKSDLYPSLSLNGSIALTHDNSF----------PGYNTHWSFG 327 + +I AK++++ L G+I L +D+SF G T +SFG Sbjct: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251 >gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 17/24 (70%) Query: 75 ILQATERINAAKENILSVRADLFP 98 I+ ++R +A +E++LSV D FP Sbjct: 382 IISGSKRSDAVEESLLSVIGDEFP 405 >gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%) Query: 165 IDARHFKERISIA-HQILDLYKKN--------IELSHLKFTQGATSKLSLVKLEAEIKSI 215 +DA E + I+ ++I DL K++ I S L QG +L + A +K++ Sbjct: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193 Query: 216 ESDIPTLEKS----FRMNVHNISTLLG 238 ++ IPT ++S F M++ + G Sbjct: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEG 220 >gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%) Query: 165 IDARHFKERISIA-HQILDLYKKN--------IELSHLKFTQGATSKLSLVKLEAEIKSI 215 +DA E + I+ ++I DL K++ I S L QG +L + A +K++ Sbjct: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193 Query: 216 ESDIPTLEKS----FRMNVHNISTLLG 238 ++ IPT ++S F M++ + G Sbjct: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEG 220 >537021.9.peg.472_1 Length = 369 Score = 23.5 bits (49), Expect = 7.5, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 358 WQETVLNAIKEVENALTSINEDKKIVTKLQHAVEL 392 WQ +L I E+E + + ++ +L HAV+L Sbjct: 318 WQ-MILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.133 0.376 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 276,850 Number of Sequences: 1233 Number of extensions: 11417 Number of successful extensions: 33 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 13 length of query: 452 length of database: 328,796 effective HSP length: 77 effective length of query: 375 effective length of database: 233,855 effective search space: 87695625 effective search space used: 87695625 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)