Query         gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 23:15:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780931.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2beq_A E2 glycoprotein; viral   29.0      31  0.0013   16.0   2.6   23    7-29      5-27  (38)
  2 3h3g_B Parathyroid hormone-rel  18.4      32  0.0013   16.0   1.0   18   31-48      2-19  (26)
  3 2iaf_A Hypothetical protein SD   9.7      66  0.0028   14.2   0.5   18   20-37     11-28  (151)
  4 1ka2_A M32 carboxypeptidase; h   7.4 1.3E+02  0.0056   12.6   3.7   43    8-50    318-369 (499)
  5 1gqa_A Cytochrome C'; electron   4.3   2E+02  0.0086   11.5   2.4   18    7-24     11-28  (130)
  6 2k85_A Glucocorticoid receptor   4.0 1.9E+02  0.0081   11.7   0.4   16   19-34     49-64  (69)
  7 1bbh_A Cytochrome C'; electron   3.9 2.2E+02  0.0094   11.3   2.4   19    7-25     13-31  (131)
  8 1srb_A Sarafotoxins precursor;   3.7   2E+02  0.0085   11.5   0.3   13   31-43      4-16  (26)
  9 2xf4_A Hydroxyacylglutathione    3.7 1.9E+02   0.008   11.7   0.1   13   20-32    198-210 (210)
 10 3he5_A Synzip1; heterodimeric    3.5 2.5E+02    0.01   11.1   1.3   17   31-47     25-41  (49)

No 1  
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=28.98  E-value=31  Score=16.02  Aligned_cols=23  Identities=43%  Similarity=0.492  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999754202334245
Q gi|254780931|r    7 KEYFKTISTVFGKLGDMRAQNIF   29 (56)
Q Consensus         7 keyfktistvfgklgdmraqnif   29 (56)
                      .|-..+.++..|||.|.-.||--
T Consensus         5 qeslstt~talgklqdvvnqna~   27 (38)
T 2beq_A            5 QESLTTTSTALGKLQDVVNQNAQ   27 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988999999999999987489


No 2  
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=18.40  E-value=32  Score=15.96  Aligned_cols=18  Identities=50%  Similarity=0.613  Sum_probs=12.9

Q ss_pred             HHCCCCHHHHHHHHHHHH
Q ss_conf             320532289999999999
Q gi|254780931|r   31 KDIKDKDIIFYLHILIAF   48 (56)
Q Consensus        31 kdikdkdiifylhiliaf   48 (56)
                      |.|.|-.--|+||-|||-
T Consensus         2 ksiqdlrrrfflhhliae   19 (26)
T 3h3g_B            2 KSIQDLRRRFFLHHLIAE   19 (26)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             638999999999999999


No 3  
>2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, protein structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A
Probab=9.65  E-value=66  Score=14.22  Aligned_cols=18  Identities=39%  Similarity=0.626  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHCCCCH
Q ss_conf             420233424553205322
Q gi|254780931|r   20 LGDMRAQNIFLKDIKDKD   37 (56)
Q Consensus        20 lgdmraqniflkdikdkd   37 (56)
                      .|-|||-+.|+..++++.
T Consensus        11 vGPmrAa~~F~~~l~~~~   28 (151)
T 2iaf_A           11 VGPMLAANAFLQLLEQKN   28 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999987531


No 4  
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A
Probab=7.36  E-value=1.3e+02  Score=12.56  Aligned_cols=43  Identities=12%  Similarity=0.326  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999754202334245532---------053228999999999999
Q gi|254780931|r    8 EYFKTISTVFGKLGDMRAQNIFLKD---------IKDKDIIFYLHILIAFEK   50 (56)
Q Consensus         8 eyfktistvfgklgdmraqniflkd---------ikdkdiifylhiliafek   50 (56)
                      -++..+...|+.+++.-..+.+...         +.--++.+-+||++-||-
T Consensus       318 ~~~p~~~~~f~~~~~~~~~~~y~~~n~v~~~~ir~~ADEvty~lHi~lR~ei  369 (499)
T 1ka2_A          318 LIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFKL  369 (499)
T ss_dssp             HHHHHHHHHCGGGGGCCHHHHHHHHTCCCCCSCGGGCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHHHHH
T ss_conf             8716789757876888899999876550610454430131221379999999


No 5  
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=4.33  E-value=2e+02  Score=11.51  Aligned_cols=18  Identities=39%  Similarity=0.702  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999997542023
Q gi|254780931|r    7 KEYFKTISTVFGKLGDMR   24 (56)
Q Consensus         7 keyfktistvfgklgdmr   24 (56)
                      +..|+.+..-|+.||+|-
T Consensus        11 q~~mk~~~~~~~~l~~m~   28 (130)
T 1gqa_A           11 KGYFSLVALEFGPLAAMA   28 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999899999998


No 6  
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=3.98  E-value=1.9e+02  Score=11.66  Aligned_cols=16  Identities=31%  Similarity=0.592  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             5420233424553205
Q gi|254780931|r   19 KLGDMRAQNIFLKDIK   34 (56)
Q Consensus        19 klgdmraqniflkdik   34 (56)
                      -.|.-.||++|.+.|+
T Consensus        49 L~Gt~kAkklF~rHi~   64 (69)
T 2k85_A           49 LEGTQKAKKLFLQHIH   64 (69)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHHHHH
T ss_conf             8581889999999999


No 7  
>1bbh_A Cytochrome C'; electron transport(heme protein); HET: HEM; 1.80A {Allochromatium vinosum} SCOP: a.24.3.2
Probab=3.88  E-value=2.2e+02  Score=11.30  Aligned_cols=19  Identities=11%  Similarity=0.129  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999975420233
Q gi|254780931|r    7 KEYFKTISTVFGKLGDMRA   25 (56)
Q Consensus         7 keyfktistvfgklgdmra   25 (56)
                      +..||.|...++.++.|-.
T Consensus        13 q~~mk~i~~~~~~l~~m~k   31 (131)
T 1bbh_A           13 QAGYEFMGWNMGKIKANLE   31 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999874


No 8  
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=3.69  E-value=2e+02  Score=11.54  Aligned_cols=13  Identities=38%  Similarity=0.961  Sum_probs=8.7

Q ss_pred             HHCCCCHHHHHHH
Q ss_conf             3205322899999
Q gi|254780931|r   31 KDIKDKDIIFYLH   43 (56)
Q Consensus        31 kdikdkdiifylh   43 (56)
                      ||..||.-.++-|
T Consensus         4 kdmtdkeclyfch   16 (26)
T 1srb_A            4 KDMTDKECLYFCH   16 (26)
T ss_dssp             SSSCSHHHHHHHS
T ss_pred             CCCCCHHHHEEEC
T ss_conf             3375504405753


No 9  
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=3.69  E-value=1.9e+02  Score=11.69  Aligned_cols=13  Identities=54%  Similarity=0.741  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             4202334245532
Q gi|254780931|r   20 LGDMRAQNIFLKD   32 (56)
Q Consensus        20 lgdmraqniflkd   32 (56)
                      +|..|+.|.|++|
T Consensus       198 ~~~e~~~N~~~~~  210 (210)
T 2xf4_A          198 LGYERLHNPFLQD  210 (210)
T ss_dssp             HHHHHHHCTTC-C
T ss_pred             HHHHHHHCHHHCC
T ss_conf             9999875845249


No 10 
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=3.45  E-value=2.5e+02  Score=11.08  Aligned_cols=17  Identities=47%  Similarity=0.694  Sum_probs=0.0

Q ss_pred             HHCCCCHHHHHHHHHHH
Q ss_conf             32053228999999999
Q gi|254780931|r   31 KDIKDKDIIFYLHILIA   47 (56)
Q Consensus        31 kdikdkdiifylhilia   47 (56)
                      |....||.|-||.--||
T Consensus        25 knlhkkdliaylekeia   41 (49)
T 3he5_A           25 KNLHKKDLIAYLEKEIA   41 (49)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
T ss_conf             02219899999999999


Done!