Query gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 56 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:15:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780931.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2beq_A E2 glycoprotein; viral 29.0 31 0.0013 16.0 2.6 23 7-29 5-27 (38) 2 3h3g_B Parathyroid hormone-rel 18.4 32 0.0013 16.0 1.0 18 31-48 2-19 (26) 3 2iaf_A Hypothetical protein SD 9.7 66 0.0028 14.2 0.5 18 20-37 11-28 (151) 4 1ka2_A M32 carboxypeptidase; h 7.4 1.3E+02 0.0056 12.6 3.7 43 8-50 318-369 (499) 5 1gqa_A Cytochrome C'; electron 4.3 2E+02 0.0086 11.5 2.4 18 7-24 11-28 (130) 6 2k85_A Glucocorticoid receptor 4.0 1.9E+02 0.0081 11.7 0.4 16 19-34 49-64 (69) 7 1bbh_A Cytochrome C'; electron 3.9 2.2E+02 0.0094 11.3 2.4 19 7-25 13-31 (131) 8 1srb_A Sarafotoxins precursor; 3.7 2E+02 0.0085 11.5 0.3 13 31-43 4-16 (26) 9 2xf4_A Hydroxyacylglutathione 3.7 1.9E+02 0.008 11.7 0.1 13 20-32 198-210 (210) 10 3he5_A Synzip1; heterodimeric 3.5 2.5E+02 0.01 11.1 1.3 17 31-47 25-41 (49) No 1 >2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 Probab=28.98 E-value=31 Score=16.02 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999754202334245 Q gi|254780931|r 7 KEYFKTISTVFGKLGDMRAQNIF 29 (56) Q Consensus 7 keyfktistvfgklgdmraqnif 29 (56) .|-..+.++..|||.|.-.||-- T Consensus 5 qeslstt~talgklqdvvnqna~ 27 (38) T 2beq_A 5 QESLTTTSTALGKLQDVVNQNAQ 27 (38) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988999999999999987489 No 2 >3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} Probab=18.40 E-value=32 Score=15.96 Aligned_cols=18 Identities=50% Similarity=0.613 Sum_probs=12.9 Q ss_pred HHCCCCHHHHHHHHHHHH Q ss_conf 320532289999999999 Q gi|254780931|r 31 KDIKDKDIIFYLHILIAF 48 (56) Q Consensus 31 kdikdkdiifylhiliaf 48 (56) |.|.|-.--|+||-|||- T Consensus 2 ksiqdlrrrfflhhliae 19 (26) T 3h3g_B 2 KSIQDLRRRFFLHHLIAE 19 (26) T ss_dssp CCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHH T ss_conf 638999999999999999 No 3 >2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, protein structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A Probab=9.65 E-value=66 Score=14.22 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHCCCCH Q ss_conf 420233424553205322 Q gi|254780931|r 20 LGDMRAQNIFLKDIKDKD 37 (56) Q Consensus 20 lgdmraqniflkdikdkd 37 (56) .|-|||-+.|+..++++. T Consensus 11 vGPmrAa~~F~~~l~~~~ 28 (151) T 2iaf_A 11 VGPMLAANAFLQLLEQKN 28 (151) T ss_dssp HHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999987531 No 4 >1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A Probab=7.36 E-value=1.3e+02 Score=12.56 Aligned_cols=43 Identities=12% Similarity=0.326 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHH Q ss_conf 9999999999754202334245532---------053228999999999999 Q gi|254780931|r 8 EYFKTISTVFGKLGDMRAQNIFLKD---------IKDKDIIFYLHILIAFEK 50 (56) Q Consensus 8 eyfktistvfgklgdmraqniflkd---------ikdkdiifylhiliafek 50 (56) -++..+...|+.+++.-..+.+... +.--++.+-+||++-||- T Consensus 318 ~~~p~~~~~f~~~~~~~~~~~y~~~n~v~~~~ir~~ADEvty~lHi~lR~ei 369 (499) T 1ka2_A 318 LIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFKL 369 (499) T ss_dssp HHHHHHHHHCGGGGGCCHHHHHHHHTCCCCCSCGGGCCTTTHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHHHHH T ss_conf 8716789757876888899999876550610454430131221379999999 No 5 >1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2 Probab=4.33 E-value=2e+02 Score=11.51 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999997542023 Q gi|254780931|r 7 KEYFKTISTVFGKLGDMR 24 (56) Q Consensus 7 keyfktistvfgklgdmr 24 (56) +..|+.+..-|+.||+|- T Consensus 11 q~~mk~~~~~~~~l~~m~ 28 (130) T 1gqa_A 11 KGYFSLVALEFGPLAAMA 28 (130) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999899999998 No 6 >2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} Probab=3.98 E-value=1.9e+02 Score=11.66 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 5420233424553205 Q gi|254780931|r 19 KLGDMRAQNIFLKDIK 34 (56) Q Consensus 19 klgdmraqniflkdik 34 (56) -.|.-.||++|.+.|+ T Consensus 49 L~Gt~kAkklF~rHi~ 64 (69) T 2k85_A 49 LEGTQKAKKLFLQHIH 64 (69) T ss_dssp HTCHHHHHHHHHHHHH T ss_pred HHCHHHHHHHHHHHHH T ss_conf 8581889999999999 No 7 >1bbh_A Cytochrome C'; electron transport(heme protein); HET: HEM; 1.80A {Allochromatium vinosum} SCOP: a.24.3.2 Probab=3.88 E-value=2.2e+02 Score=11.30 Aligned_cols=19 Identities=11% Similarity=0.129 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999975420233 Q gi|254780931|r 7 KEYFKTISTVFGKLGDMRA 25 (56) Q Consensus 7 keyfktistvfgklgdmra 25 (56) +..||.|...++.++.|-. T Consensus 13 q~~mk~i~~~~~~l~~m~k 31 (131) T 1bbh_A 13 QAGYEFMGWNMGKIKANLE 31 (131) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999874 No 8 >1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1 Probab=3.69 E-value=2e+02 Score=11.54 Aligned_cols=13 Identities=38% Similarity=0.961 Sum_probs=8.7 Q ss_pred HHCCCCHHHHHHH Q ss_conf 3205322899999 Q gi|254780931|r 31 KDIKDKDIIFYLH 43 (56) Q Consensus 31 kdikdkdiifylh 43 (56) ||..||.-.++-| T Consensus 4 kdmtdkeclyfch 16 (26) T 1srb_A 4 KDMTDKECLYFCH 16 (26) T ss_dssp SSSCSHHHHHHHS T ss_pred CCCCCHHHHEEEC T ss_conf 3375504405753 No 9 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Probab=3.69 E-value=1.9e+02 Score=11.69 Aligned_cols=13 Identities=54% Similarity=0.741 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 4202334245532 Q gi|254780931|r 20 LGDMRAQNIFLKD 32 (56) Q Consensus 20 lgdmraqniflkd 32 (56) +|..|+.|.|++| T Consensus 198 ~~~e~~~N~~~~~ 210 (210) T 2xf4_A 198 LGYERLHNPFLQD 210 (210) T ss_dssp HHHHHHHCTTC-C T ss_pred HHHHHHHCHHHCC T ss_conf 9999875845249 No 10 >3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Probab=3.45 E-value=2.5e+02 Score=11.08 Aligned_cols=17 Identities=47% Similarity=0.694 Sum_probs=0.0 Q ss_pred HHCCCCHHHHHHHHHHH Q ss_conf 32053228999999999 Q gi|254780931|r 31 KDIKDKDIIFYLHILIA 47 (56) Q Consensus 31 kdikdkdiifylhilia 47 (56) |....||.|-||.--|| T Consensus 25 knlhkkdliaylekeia 41 (49) T 3he5_A 25 KNLHKKDLIAYLEKEIA 41 (49) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHH T ss_conf 02219899999999999 Done!