BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780931|ref|YP_003065344.1| hypothetical protein
CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
(56 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040608|gb|ACT57404.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 56
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYLL 56
MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYLL
Sbjct: 1 MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYLL 56
>gi|125974804|ref|YP_001038714.1| restriction endonuclease (HaeIII) [Clostridium thermocellum ATCC
27405]
gi|125715029|gb|ABN53521.1| restriction endonuclease (HaeIII) [Clostridium thermocellum ATCC
27405]
Length = 319
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 4 PCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYL 55
PC++ YF I+ +F +L ++R Q ++I +K+ FY+ +L AF + ++ L
Sbjct: 141 PCSESYFIEINPLFDELEELREQGELWRNISNKEERFYVPLLEAFIRELERL 192
>gi|304390096|ref|ZP_07372050.1| type II site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326578|gb|EFL93822.1| type II site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 317
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 4 PCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAF 48
PC++ Y+ + +F L +AQ + +I+DKD Y+ +L AF
Sbjct: 141 PCSQRYWDDVEPIFTCLAAKKAQGLKWSEIRDKDTTVYVPLLQAF 185
>gi|298346144|ref|YP_003718831.1| type II site-specific deoxyribonuclease [Mobiluncus curtisii ATCC
43063]
gi|315657353|ref|ZP_07910235.1| type II restriction enzyme HaeIII [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236205|gb|ADI67337.1| type II site-specific deoxyribonuclease [Mobiluncus curtisii ATCC
43063]
gi|315491825|gb|EFU81434.1| type II restriction enzyme HaeIII [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 317
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 4 PCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAF 48
PC++ Y+ + +F L +AQ + +I+DKD Y+ +L AF
Sbjct: 141 PCSQRYWDDVEPIFTCLAAKKAQGLKWSEIRDKDTTVYVPLLQAF 185
>gi|315654723|ref|ZP_07907629.1| type II restriction enzyme HaeIII [Mobiluncus curtisii ATCC 51333]
gi|315491187|gb|EFU80806.1| type II restriction enzyme HaeIII [Mobiluncus curtisii ATCC 51333]
Length = 317
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 4 PCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAF 48
PC++ Y+ + +F L +AQ + +I+DKD Y+ +L AF
Sbjct: 141 PCSQRYWDDVEPIFTCLAAKKAQGLKWSEIRDKDATVYVPLLQAF 185
>gi|148910486|gb|ABR18318.1| unknown [Picea sitchensis]
Length = 403
Score = 33.7 bits (76), Expect = 7.5, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 5 CNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAF 48
C+++ FKT+ TVF K D+R I + +K + F LHILI
Sbjct: 255 CDRKLFKTVLTVFCKDTDLR-NTITTRVVKKQSATFILHILITL 297
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.331 0.150 0.447
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 817,729,201
Number of Sequences: 14124377
Number of extensions: 35123832
Number of successful extensions: 104787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 104778
Number of HSP's gapped (non-prelim): 11
length of query: 56
length of database: 4,842,793,630
effective HSP length: 29
effective length of query: 27
effective length of database: 4,433,186,697
effective search space: 119696040819
effective search space used: 119696040819
T: 11
A: 40
X1: 16 ( 7.6 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 76 (33.7 bits)