RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780931|ref|YP_003065344.1| hypothetical protein
CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|34090 COG4383, COG4383, Mu-like prophage protein gp29 [Function
          unknown].
          Length = 517

 Score = 25.0 bits (54), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 21 GDMRAQNIFLKDIKDKD 37
          GD+RAQ+    DI++KD
Sbjct: 53 GDLRAQSELFADIEEKD 69


>gnl|CDD|36367 KOG1152, KOG1152, KOG1152, Signal transduction serine/threonine
           kinase with PAS/PAC sensor domain [Signal transduction
           mechanisms].
          Length = 772

 Score = 24.2 bits (52), Expect = 8.6
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 1   MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDY 54
           MD P  K  FK +      L D   Q I  +DIKD+++I   +    F K+ID+
Sbjct: 667 MDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDSN---GFVKLIDF 714


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.150    0.447 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 716,834
Number of extensions: 28084
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 56
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,658,685
Effective search space: 158443180
Effective search space used: 158443180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)