RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62] (56 letters) >gnl|CDD|34090 COG4383, COG4383, Mu-like prophage protein gp29 [Function unknown]. Length = 517 Score = 25.0 bits (54), Expect = 4.6 Identities = 9/17 (52%), Positives = 13/17 (76%) Query: 21 GDMRAQNIFLKDIKDKD 37 GD+RAQ+ DI++KD Sbjct: 53 GDLRAQSELFADIEEKD 69 >gnl|CDD|36367 KOG1152, KOG1152, KOG1152, Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]. Length = 772 Score = 24.2 bits (52), Expect = 8.6 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Query: 1 MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDY 54 MD P K FK + L D Q I +DIKD+++I + F K+ID+ Sbjct: 667 MDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDSN---GFVKLIDF 714 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.150 0.447 Gapped Lambda K H 0.267 0.0551 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 716,834 Number of extensions: 28084 Number of successful extensions: 94 Number of sequences better than 10.0: 1 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 2 Length of query: 56 Length of database: 6,263,737 Length adjustment: 28 Effective length of query: 28 Effective length of database: 5,658,685 Effective search space: 158443180 Effective search space used: 158443180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 51 (23.8 bits)