RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780931|ref|YP_003065344.1| hypothetical protein
CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
           niger), endo-polygalacturonase II [TaxId: 5061]}
          Length = 335

 Score = 22.3 bits (47), Expect = 9.8
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 1   MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIF 40
           +    N    KTIS   G + ++   NI +  I D  ++ 
Sbjct: 221 VSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVI 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.150    0.447 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 227,947
Number of extensions: 7987
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 2,407,596
Length adjustment: 27
Effective length of query: 29
Effective length of database: 2,036,886
Effective search space: 59069694
Effective search space used: 59069694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)