RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780932|ref|YP_003065345.1| hypothetical protein
CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62]
(236 letters)
>gnl|CDD|33620 COG3827, COG3827, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 231
Score = 95.1 bits (236), Expect = 2e-20
Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 19/237 (8%)
Query: 12 MEEIVNSIRRILENNDQEFSTSNNVQTQVPARDEGVIEKEDFVQEDKMSNHLFADQNSHL 71
MEEI+ SIRRI+E++D + PA E E D+ + A ++ +
Sbjct: 1 MEEILASIRRIIEDSDFSRQLDED-----PASGEAAFAAEPVAPPDRKPQAVAA-RSPAV 54
Query: 72 KKYGVEYPKKETMSLSDVAARVRAEARGDARIIADA-------------PSPIANSILPS 118
E + +L++VAARVRA DA A P+ I + +
Sbjct: 55 DARMNEQSPSQAPTLAEVAARVRAAIARDAAPGPAAVAQAQNPDEKKNEPASIEDIVKEI 114
Query: 119 TDALEENAVMDKPLNEGLSPSSDLGMQAEESMYSPDLVDKCKGEEEALVSSDVGDQVASS 178
+ + A K +P+S+ ++ E++ + K A++S G QVA +
Sbjct: 115 SGVIAPKARPPKNAAGENAPASEDRPESTEAVTQSEEATAIKSAPAAILSEAAGRQVADA 174
Query: 179 FDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIERIARGPIR 235
F L A S RSL++++ ++LRPML++WLD NLP +VERLVREEIER+ RG R
Sbjct: 175 FGDLSLAFNSSSRRSLEEMAAEMLRPMLQDWLDKNLPTLVERLVREEIERVVRGSKR 231
>gnl|CDD|30898 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 31.4 bits (71), Expect = 0.20
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLV 222
EE L+ +DVG + A +++++ LR+ E + + ++ LRE L + L + + +
Sbjct: 73 EELLIEADVGVETA---EEIIEELRKREGKKKKIKDEETVKEALREALIEILRPVDKVDL 129
Query: 223 REEIER 228
EI +
Sbjct: 130 PLEIPK 135
>gnl|CDD|32040 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 28.7 bits (64), Expect = 1.6
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 14 EIVNSIRRILENNDQEFSTSNNVQTQV------------PARDEGVIEKEDFVQEDKMSN 61
EI IR + TS+ VQ V P + + E+F E+ MS
Sbjct: 94 EIDAMIREVALEYGATLVTSDRVQRDVARAKGIEVEYLEPVEEPEEVRIEEFFDEETMSV 153
Query: 62 HLFADQNSHLKK 73
HL KK
Sbjct: 154 HLKEGVPPMAKK 165
>gnl|CDD|34143 COG4465, CodY, Pleiotropic transcriptional repressor
[Transcription].
Length = 261
Score = 27.9 bits (62), Expect = 2.3
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 89 VAARVRAEARGDARIIAD-APSPIANSILPS-TDALEENAVMDKPLNEGLSPSSDLGMQA 146
+ R+ + D I+ + A + + IL + +EE A + +S S ++A
Sbjct: 131 ILWRLDDKFTDDDLILVEYAATVVGMQILREKLEEIEEEARKRTVVQMAISTLSYSELEA 190
Query: 147 EESMYSPDLVDKCKGEEEALVSSDVGDQVASSFDQLVKALR--ES----ESRSL 194
E ++ ++ G E LV+S + D+V + +V ALR ES ESRSL
Sbjct: 191 VEHIF-----EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSL 239
>gnl|CDD|31620 COG1431, COG1431, Uncharacterized protein containing piwi/argonaute
domain [Translation, ribosomal structure and
biogenesis].
Length = 685
Score = 27.3 bits (60), Expect = 4.2
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 166 LVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREE 225
+ S++ ++ S+ ++V + S L + R + D+L I++ + EE
Sbjct: 349 VTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPKMKDDLTKIIKEIDVEE 408
Query: 226 I 226
+
Sbjct: 409 L 409
>gnl|CDD|33784 COG4025, COG4025, Predicted membrane protein [Function unknown].
Length = 284
Score = 26.5 bits (58), Expect = 6.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 213 NLPGIVERLVREEIERIA 230
NLP IV +L++E +R A
Sbjct: 23 NLPWIVVKLLKEGPKRSA 40
>gnl|CDD|145066 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic
domain. This is a family of vitamin-B12 independent
methionine synthases or
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferases, EC:2.1.1.14 from bacteria and
plants. Plants are the only higher eukaryotes that have
the required enzymes for methionine synthesis. This
enzyme catalyses the last step in the production of
methionine by transferring a methyl group from
5-methyltetrahydrofolate to homocysteine. The aligned
region makes up the carboxy region of the approximately
750 amino acid protein except in some hypothetical
archaeal proteins present in the family, where this
region corresponds to the entire length. This domain
contains the catalytic residues of the enzyme.
Length = 324
Score = 26.6 bits (59), Expect = 6.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 10 PSMEEIVNSIRRILENNDQE 29
PS+EEI I++ L+ +
Sbjct: 274 PSVEEIKALIKKALDIVPAD 293
>gnl|CDD|36461 KOG1247, KOG1247, KOG1247, Methionyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 567
Score = 26.1 bits (57), Expect = 9.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 197 LSLDVLRPMLREWLDDNLPG 216
LSLD L P L EWL L
Sbjct: 202 LSLDKLEPRLEEWLRRTLVE 221
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.310 0.128 0.344
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,681,067
Number of extensions: 133235
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 20
Length of query: 236
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,297,318
Effective search space: 623111110
Effective search space used: 623111110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.3 bits)