RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780932|ref|YP_003065345.1| hypothetical protein
CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62]
(236 letters)
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R,
kinase domain, hormone/growth factor complex; 1.50A
{Homo sapiens} (A:110-322)
Length = 213
Score = 31.7 bits (70), Expect = 0.092
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNVQTQVPARDE 45
QYN PS EI++SI+ +E +E S + + ++P +E
Sbjct: 167 CWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEENKLPEPEE 211
>1y6a_A Vascular endothelial growth factor receptor 2; transferase;
HET: AAZ; 2.10A {Homo sapiens} PDB: 1y6b_A* 3hng_A*
(A:115-366)
Length = 252
Score = 28.4 bits (62), Expect = 0.90
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
P+ E+V + +L+ N Q+
Sbjct: 223 CWHGEPSQRPTFSELVEHLGNLLQANAQQ 251
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold
consisting of N- and C-lobes, transferase; 2.40A {Homo
sapiens} (A:169-370)
Length = 202
Score = 27.4 bits (59), Expect = 1.7
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
P+ +++V + RIL E
Sbjct: 173 CWHAVPSQRPTFKQLVEDLDRILTLTTNE 201
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor,
quinazoline, aortic aneurysm, ATP-binding,
craniosynostosis, disease mutation, disulfide bond; HET:
855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A*
2wot_A* 2wou_A* 1py5_A* 1rw8_A* (A:)
Length = 303
Score = 27.4 bits (59), Expect = 1.7
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENND 27
N + + I ++ ++ +
Sbjct: 274 CWYANGAARLTALRIKKTLSQLSQQEG 300
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase;
2.20A {Homo sapiens} (A:109-327)
Length = 219
Score = 27.1 bits (58), Expect = 1.9
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTS 33
+ PS +I+ S+ R+LE +T+
Sbjct: 169 CWREKPYERPSFAQILVSLNRMLEERKTYVNTT 201
>3ewh_A Vascular endothelial growth factor receptor 2; angiogenesis,
receptor tyrosine kinase, DFG-OUT, transferase; HET:
K11; 1.60A {Homo sapiens} PDB: 2qu5_A* 2qu6_A* 2rl5_A*
3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* 3dtw_A*
3be2_A* 2p2i_A* 1ywn_A* 1vr2_A* 3c7q_A* 2oh4_A* 3cjf_A*
3cjg_A* (A:106-314)
Length = 209
Score = 27.2 bits (59), Expect = 2.0
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNN 35
P+ E+V + +L+ N Q+ ++
Sbjct: 173 CWHGEPSQRPTFSELVEHLGNLLQANAQQDRHHHH 207
>1b6c_B TGF-B superfamily receptor type I; complex
(isomerase/protein kinase), receptor serine/threonine
kinase; 2.60A {Homo sapiens} (B:124-342)
Length = 219
Score = 26.9 bits (58), Expect = 2.3
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENND 27
N + + I ++ ++ +
Sbjct: 190 CWYANGAARLTALRIKKTLSQLSQQEG 216
>1sm2_A Tyrosine-protein kinase ITK/TSK; immunology, transferase;
HET: STU; 2.30A {Homo sapiens} (A:83-264)
Length = 182
Score = 26.5 bits (57), Expect = 3.0
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENN 26
+ P+ ++ + I E+
Sbjct: 156 CWKERPEDRPAFSRLLRQLAEIAESG 181
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2ivv_A* (A:108-314)
Length = 207
Score = 26.4 bits (57), Expect = 3.2
Identities = 2/26 (7%), Positives = 8/26 (30%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENN 26
+ P +I + +++
Sbjct: 181 CWKQEPDKRPVFADISKDLEKMMVKR 206
>3e64_A Tyrosine-protein kinase JAK2; drug discovery, fragment
based, ATP-binding, chromosomal rearrangement, disease
mutation, membrane; HET: PTR 5B3; 1.80A {Homo sapiens}
PDB: 3e62_A* 3e63_A* 2b7a_A* 3fup_A* (A:95-293)
Length = 199
Score = 26.1 bits (56), Expect = 3.8
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILEN 25
N PS ++ + +I +N
Sbjct: 173 CWNNNVNQRPSFRDLALRVDQIRDN 197
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 26.4 bits (58), Expect = 3.9
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 179 FDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIERIARGPIRH 236
+++ L+ L L+ + E D ++ER EI A +R
Sbjct: 33 LVTREAQIKDWVENELEALKLEAEE-IPSE---DQNEFLLERT--REIHNEAESQLRA 84
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase,
nucleotide-binding, signal, transferase,
phosphorylation, transmembrane, tyrosine- protein
kinase; HET: PTR; 2.15A {Homo sapiens} (A:132-325)
Length = 194
Score = 26.1 bits (56), Expect = 4.2
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSN 34
+ P +IV+ + ++ + + +T+
Sbjct: 159 CWHKDRAQRPRFSQIVSVLDALIRSPESLRATAT 192
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase
domain, kinase inhibitor complex, transferase; HET: 5CN;
1.80A {Homo sapiens} PDB: 3bea_A* 2i0y_A* 2i0v_A*
3dpk_A* 2ogv_A (A:1-33,A:133-333)
Length = 234
Score = 26.0 bits (56), Expect = 4.4
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
P+ ++I + ++ + + +E
Sbjct: 204 CWALEPTHRPTFQQICSFLQEQAQEDRRE 232
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein,
vesicular trafficking, endocytosis, hydrolase, GTPase
activation; 1.90A {Saccharomyces cerevisiae}
(A:1-52,A:193-396)
Length = 256
Score = 25.8 bits (56), Expect = 5.3
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 19 IRRILENNDQEFSTSNNVQTQVPARDEGVIEKEDFVQEDKMSNHLFADQNSHLKKY 74
I+ + + +F + P +D + E + E + L+ D SH +
Sbjct: 197 IKWSDQLXEXDFQETITFLQNPPTKDWTETDIEXLLSEAFIWQSLYKDATSHWLHH 252
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold
consisting of N- and C-lobes, transferase; HET: PTR ABG;
1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A*
2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3c4f_A* (A:123-334)
Length = 212
Score = 25.9 bits (55), Expect = 5.6
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
P+ +++V + RIL E
Sbjct: 173 CWHAVPSQRPTFKQLVEDLDRILTLTTNE 201
Score = 25.5 bits (54), Expect = 6.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 178 SFDQLVKALRESESRSLDQLSLDVLRPM 205
+F QLV+ L + + ++ LD+ +P+
Sbjct: 183 TFKQLVEDLDRILTLTTNEEYLDLSQPL 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics,
JCSG, protein structure initiative, PSI, joint center
for structural genomics; HET: CIT; 1.60A {Thermotoga
maritima} (A:)
Length = 306
Score = 25.6 bits (55), Expect = 5.6
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 117 PSTDALEENAVMDKPLNEGLSPSSD-LGMQAEESMYSPDLVDKCKGE-EEALVSSDVGDQ 174
+ + L +GL + + + + + L D+ + E EE L+ +DVG +
Sbjct: 4 DKIHHHHHHMGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVE 63
Query: 175 VASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIV 218
+ ++ SL ++ L++L + + P ++
Sbjct: 64 TTEYILERLEEKDGDALESLKEIILEILNFDTKLNVPPEPPFVI 107
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A*
3efk_A* 2wgj_A* 3cth_A* 3ce3_A* 3ctj_A* 3f82_A* 1r0p_A*
1r1w_A 3dkc_A* 3dkf_A* 2g15_A 3dkg_A* 2wd1_A*
(A:109-298)
Length = 190
Score = 25.7 bits (55), Expect = 5.8
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
A PS E+V+ I I E
Sbjct: 160 CWHPKAEMRPSFSELVSRISAIFSTFIGE 188
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H-
pyrrolo[3,2-D]pyrimidin-7-YL-cyclopentane, TEC-family;
HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 1k2p_A
(A:101-283)
Length = 183
Score = 25.7 bits (55), Expect = 5.8
Identities = 3/25 (12%), Positives = 12/25 (48%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILEN 25
A P+ + ++++I +++
Sbjct: 157 CWHEKADERPTFKILLSNILDVMDE 181
>3eyg_A Tyrosine-protein kinase; JAK kinase, ATP-binding,
nucleotide-binding, phosphoprotein, SH2 domain,
transferase; HET: PTR MI1; 1.90A {Homo sapiens} PDB:
3eyh_A* (A:96-290)
Length = 195
Score = 25.6 bits (55), Expect = 6.1
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILE 24
++ + S + ++ +L+
Sbjct: 172 CWEFQPSNRTSFQNLIEGFEALLK 195
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding,
disease mutation, glycoprotein, nucleotide-binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A* (A:125-313)
Length = 189
Score = 25.7 bits (55), Expect = 6.2
Identities = 3/25 (12%), Positives = 12/25 (48%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILEN 25
+ + + P+ + + ++LE+
Sbjct: 161 CWRTDPLDRPTFSVLRLQLEKLLES 185
>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY;
DNA-binding, nucleotide-binding, transcription
regulation, winged HTH motif.; 2.90A {Bacillus subtilis}
(A:)
Length = 102
Score = 25.6 bits (56), Expect = 6.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 155 LVDKCKGEEEALVSSDVGDQVASSFDQLVKALR--ES----ESRSL 194
+ ++ G E LV+S + D+V + +V ALR ES ESRSL
Sbjct: 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSL 78
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens}
(A:344-535)
Length = 192
Score = 25.4 bits (54), Expect = 6.5
Identities = 3/36 (8%), Positives = 11/36 (30%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNV 36
+ P+ E + + + + + N+
Sbjct: 157 CWRKEPEERPTFEYLQAFLEDYFTSTEPQXQPGENL 192
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine
kinase, phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} (A:261-452)
Length = 192
Score = 25.4 bits (54), Expect = 6.5
Identities = 3/36 (8%), Positives = 11/36 (30%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNV 36
+ P+ E + + + + + N+
Sbjct: 157 CWRKEPEERPTFEYLQAFLEDYFTSTEPQXQPGENL 192
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate
kinase, transferase, calmodulin-binding; 1.8A {Homo
sapiens} (A:1-68)
Length = 68
Score = 25.4 bits (56), Expect = 6.6
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 174 QVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVER 220
+ A + ++K E E L +L D LR + + G+VER
Sbjct: 14 KAAGTSGLILKRCSEPERYCLARLXADALRGCVPAFH-----GVVER 55
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor,
protein transport; 1.95A {Mycoplasma mycoides} PDB:
1zu5_A (A:1-96,A:300-320)
Length = 117
Score = 25.5 bits (56), Expect = 6.9
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNL 214
E+ L+ +D+G ++ ++ +R+ R + ++ L E L
Sbjct: 41 EDVLIQTDMGMKMV---LKVSNLVRKKTKRDTSF---ENIKDALVESLYQAY 86
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR
{Homo sapiens} (A:)
Length = 70
Score = 25.5 bits (56), Expect = 6.9
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNVQTQVPARDEGV 47
P+ EE+ +I+++L + + E T + +V
Sbjct: 3 PLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTY 49
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural
genomics, structural genomics consortium, SGC,
transferase; HET: I3P; 2.60A {Homo sapiens} (A:1-51)
Length = 51
Score = 25.4 bits (56), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 182 LVKALRESESRSLDQLSLDVLRPM 205
++K + E RSL+QL D LRP
Sbjct: 5 ILKRFCQCEQRSLEQLMKDPLRPF 28
>1yvj_A Janus kinase 3, tyrosine-protein kinase JAK3, JAK-3, JAK3,
leukocyte janus; tyrosine kinase, SCID, severe combined
immunodeficiency, STAT5, STAT6; HET: PTR 4ST; 2.55A
{Homo sapiens} (A:94-290)
Length = 197
Score = 25.2 bits (54), Expect = 8.1
Identities = 2/26 (7%), Positives = 7/26 (26%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENN 26
+ PS + + + +
Sbjct: 171 CWAPSPQDRPSFSALGPQLDMLWSGS 196
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens} (A:127-326)
Length = 200
Score = 24.9 bits (53), Expect = 9.2
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILE 24
N PS ++ + +I +
Sbjct: 173 CWNNNVNQRPSFRDLALRVDQIRD 196
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.310 0.128 0.344
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,678,169
Number of extensions: 72871
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 46
Length of query: 236
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 150
Effective length of database: 2,048,819
Effective search space: 307322850
Effective search space used: 307322850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)