RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780932|ref|YP_003065345.1| hypothetical protein CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62] (236 letters) >d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 91 Score = 27.8 bits (62), Expect = 0.88 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Query: 155 LVDKCKGEEEALVSSDVGDQVASSFDQLVKALR--ES----ESRSLDQLS--LDVLRPML 206 + ++ G E LV+S + D+V + +V ALR ES ESRSL + VL Sbjct: 24 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKF 83 Query: 207 REWLD 211 L+ Sbjct: 84 LIELE 88 >d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]} Length = 81 Score = 27.4 bits (61), Expect = 1.2 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 132 LNEGLSPSSDLGMQAEESMYSPDLVDKCKGE--EEALVSSDVGDQVASSFDQLVKALRES 189 L +GL + + + +D E EE L+ +DVG + + +++ L E Sbjct: 7 LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETT---EYILERLEEK 63 Query: 190 ESRSLDQLSLDVLRPML 206 + +L+ L +++ +L Sbjct: 64 DGDALESLK-EIILEIL 79 >d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Score = 27.0 bits (60), Expect = 1.4 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 9 EPSMEEIVNSIRRILENNDQEFSTSNNVQTQVPARDEGV--IEKEDFVQE 56 P+ EE+ +I+++L + + E T + +V E++DF++ Sbjct: 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKT 60 >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Length = 336 Score = 26.8 bits (59), Expect = 1.5 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 170 DVGDQVASSFDQLVKALRESESRSLDQLSLDVL-RPMLREWLDDNLP 215 V + + F +L LR ++ L + + + R W+ D +P Sbjct: 36 SVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVP 82 >d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 120 Score = 26.9 bits (59), Expect = 1.7 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 173 DQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIERIARG 232 D VA S ++ R + L L + +E L+ LPGI+E + Sbjct: 52 DVVARSIMIEIREGRGCDGPWGPHAKLK-LDHLGKEVLESRLPGILELSRTFAHVDPVKE 110 Query: 233 PI 234 PI Sbjct: 111 PI 112 >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 Score = 26.7 bits (58), Expect = 1.8 Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFS 31 QYN PS EI++SI+ +E +E S Sbjct: 271 CWQYNPKMRPSFLEIISSIKEEMEPGFREVS 301 >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 Score = 26.3 bits (57), Expect = 2.3 Identities = 5/24 (20%), Positives = 8/24 (33%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILE 24 PS I ++R+ E Sbjct: 278 CWSKLPADRPSFCSIHRILQRMCE 301 >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 Score = 26.4 bits (57), Expect = 2.4 Identities = 5/26 (19%), Positives = 10/26 (38%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILENN 26 P+ E+V + +L+ N Sbjct: 273 CWHGEPSQRPTFSELVEHLGNLLQAN 298 >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 Score = 26.3 bits (57), Expect = 2.5 Identities = 6/25 (24%), Positives = 13/25 (52%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILEN 25 Q + P +IVN++ +++ N Sbjct: 269 CWQKDRNHRPKFGQIVNTLDKMIRN 293 >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 Score = 25.9 bits (56), Expect = 2.9 Identities = 9/37 (24%), Positives = 11/37 (29%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNVQ 37 A PS E+V+ I I E N Sbjct: 270 CWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVNAT 306 >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 Score = 25.5 bits (55), Expect = 3.5 Identities = 8/33 (24%), Positives = 15/33 (45%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTS 33 + PS +I+ S+ R+LE +T+ Sbjct: 262 CWREKPYERPSFAQILVSLNRMLEERKTYVNTT 294 >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Score = 25.6 bits (55), Expect = 4.1 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%) Query: 24 ENNDQEFSTSNNVQTQVPARDEGVIEKEDFVQEDKMSNHLFAD---QNSHL-KKYGVEYP 79 E E+ + + A E FV E + +NH F + L ++ Y Sbjct: 216 EKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYT 275 Query: 80 KKETM 84 + Sbjct: 276 GNISS 280 >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 Score = 25.4 bits (55), Expect = 4.2 Identities = 3/25 (12%), Positives = 9/25 (36%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILEN 25 + P+ ++ + I E+ Sbjct: 238 CWKERPEDRPAFSRLLRQLAEIAES 262 >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 Score = 25.2 bits (54), Expect = 5.1 Identities = 5/27 (18%), Positives = 11/27 (40%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILENND 27 Q P +IV+ + +++ D Sbjct: 249 CWQQERARRPKFADIVSILDKLIRAPD 275 >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 Score = 25.1 bits (54), Expect = 6.2 Identities = 6/27 (22%), Positives = 11/27 (40%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILENND 27 Q+N PS EI + + + + Sbjct: 252 CWQWNPSDRPSFAEIHQAFETMFQESS 278 >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Score = 24.7 bits (53), Expect = 7.7 Identities = 6/24 (25%), Positives = 9/24 (37%) Query: 1 MAQYNAVSEPSMEEIVNSIRRILE 24 Y+ P E+ + ILE Sbjct: 245 CWAYDPSRRPRFTELKAQLSTILE 268 >d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118 Score = 24.6 bits (53), Expect = 8.7 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 9/51 (17%) Query: 171 VGDQVAS---------SFDQLVKALRESESRSLDQLSLDVLRPMLREWLDD 212 GD++ + + + AL+++ ++ D + L V +E+ D+ Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDE 114 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.310 0.128 0.344 Gapped Lambda K H 0.267 0.0674 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 816,955 Number of extensions: 36542 Number of successful extensions: 107 Number of sequences better than 10.0: 1 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 25 Length of query: 236 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 153 Effective length of database: 1,268,006 Effective search space: 194004918 Effective search space used: 194004918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 51 (23.5 bits)