RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780932|ref|YP_003065345.1| hypothetical protein
CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62]
         (236 letters)



>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional
           pleiotropic repressor CodY, C-terminal domain {Bacillus
           subtilis [TaxId: 1423]}
          Length = 91

 Score = 27.8 bits (62), Expect = 0.88
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 155 LVDKCKGEEEALVSSDVGDQVASSFDQLVKALR--ES----ESRSLDQLS--LDVLRPML 206
           + ++  G E  LV+S + D+V  +   +V ALR  ES    ESRSL      + VL    
Sbjct: 24  IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKF 83

Query: 207 REWLD 211
              L+
Sbjct: 84  LIELE 88


>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor,
           FtsY {Thermotoga maritima [TaxId: 2336]}
          Length = 81

 Score = 27.4 bits (61), Expect = 1.2
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 132 LNEGLSPSSDLGMQAEESMYSPDLVDKCKGE--EEALVSSDVGDQVASSFDQLVKALRES 189
           L +GL  + +        +     +D    E  EE L+ +DVG +     + +++ L E 
Sbjct: 7   LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETT---EYILERLEEK 63

Query: 190 ESRSLDQLSLDVLRPML 206
           +  +L+ L  +++  +L
Sbjct: 64  DGDALESLK-EIILEIL 79


>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 70

 Score = 27.0 bits (60), Expect = 1.4
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 9  EPSMEEIVNSIRRILENNDQEFSTSNNVQTQVPARDEGV--IEKEDFVQE 56
           P+ EE+  +I+++L + + E  T   +  +V          E++DF++ 
Sbjct: 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKT 60


>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
           superhelical domain {Lamprey (Ichthyomyzon unicuspis)
           [TaxId: 30308]}
          Length = 336

 Score = 26.8 bits (59), Expect = 1.5
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 170 DVGDQVASSFDQLVKALRESESRSLDQLSLDVL-RPMLREWLDDNLP 215
            V +   + F +L   LR  ++  L  +   +  +   R W+ D +P
Sbjct: 36  SVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVP 82


>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia
           coli [TaxId: 562]}
          Length = 120

 Score = 26.9 bits (59), Expect = 1.7
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 173 DQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIERIARG 232
           D VA S    ++  R  +        L  L  + +E L+  LPGI+E           + 
Sbjct: 52  DVVARSIMIEIREGRGCDGPWGPHAKLK-LDHLGKEVLESRLPGILELSRTFAHVDPVKE 110

Query: 233 PI 234
           PI
Sbjct: 111 PI 112


>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 308

 Score = 26.7 bits (58), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENNDQEFS 31
             QYN    PS  EI++SI+  +E   +E S
Sbjct: 271 CWQYNPKMRPSFLEIISSIKEEMEPGFREVS 301


>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 301

 Score = 26.3 bits (57), Expect = 2.3
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILE 24
                    PS   I   ++R+ E
Sbjct: 278 CWSKLPADRPSFCSIHRILQRMCE 301


>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
           receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 299

 Score = 26.4 bits (57), Expect = 2.4
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENN 26
                    P+  E+V  +  +L+ N
Sbjct: 273 CWHGEPSQRPTFSELVEHLGNLLQAN 298


>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 299

 Score = 26.3 bits (57), Expect = 2.5
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILEN 25
             Q +    P   +IVN++ +++ N
Sbjct: 269 CWQKDRNHRPKFGQIVNTLDKMIRN 293


>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 311

 Score = 25.9 bits (56), Expect = 2.9
 Identities = 9/37 (24%), Positives = 11/37 (29%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNVQ 37
                A   PS  E+V+ I  I      E     N  
Sbjct: 270 CWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVNAT 306


>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 309

 Score = 25.5 bits (55), Expect = 3.5
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTS 33
             +      PS  +I+ S+ R+LE      +T+
Sbjct: 262 CWREKPYERPSFAQILVSLNRMLEERKTYVNTT 294


>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 288

 Score = 25.6 bits (55), Expect = 4.1
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 24  ENNDQEFSTSNNVQTQVPARDEGVIEKEDFVQEDKMSNHLFAD---QNSHL-KKYGVEYP 79
           E    E+   + +     A        E FV E + +NH F     +   L  ++   Y 
Sbjct: 216 EKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYT 275

Query: 80  KKETM 84
              + 
Sbjct: 276 GNISS 280


>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 263

 Score = 25.4 bits (55), Expect = 4.2
 Identities = 3/25 (12%), Positives = 9/25 (36%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILEN 25
             +      P+   ++  +  I E+
Sbjct: 238 CWKERPEDRPAFSRLLRQLAEIAES 262


>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 283

 Score = 25.2 bits (54), Expect = 5.1
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENND 27
             Q      P   +IV+ + +++   D
Sbjct: 249 CWQQERARRPKFADIVSILDKLIRAPD 275


>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 287

 Score = 25.1 bits (54), Expect = 6.2
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENND 27
             Q+N    PS  EI  +   + + + 
Sbjct: 252 CWQWNPSDRPSFAEIHQAFETMFQESS 278


>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 24.7 bits (53), Expect = 7.7
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILE 24
              Y+    P   E+   +  ILE
Sbjct: 245 CWAYDPSRRPRFTELKAQLSTILE 268


>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 118

 Score = 24.6 bits (53), Expect = 8.7
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 9/51 (17%)

Query: 171 VGDQVAS---------SFDQLVKALRESESRSLDQLSLDVLRPMLREWLDD 212
            GD++ +         +  +   AL+++ ++  D + L V     +E+ D+
Sbjct: 64  KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDE 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,955
Number of extensions: 36542
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 25
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.5 bits)