HHsearch alignment for GI: 254780933 and conserved domain: COG0215
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.85 E-value=2.6e-20 Score=166.91 Aligned_cols=146 Identities=19% Similarity=0.335 Sum_probs=112.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC-CCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 53012455432101356777665301211337868520000144-31000122554312456530233202540344454
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHA-LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY 618 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~ 618 (947)
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~------g~~~~a~yWmH~G~l~-i~geKMSKSLGNfiti~d~l~~~~p~~lR~~ 294 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAAT------GVKPFAKYWMHNGFLN-IDGEKMSKSLGNFITVRDLLKKYDPEVLRLF 294 (464)
T ss_pred CCEECCCCCCCCCCCCCHHHHHHHHH------CCCCCEEEEEECCEEE-ECCCCCCCCCCCEEEHHHHHHHCCHHHHHHH
T ss_conf 51246850255888630899987642------9976005868826452-4672765235776679999865487999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf 31233556775434110111000012344433332024445776767743331555677999999998889987-53100
Q gi|254780933|r 619 FSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM-ENHRF 697 (947)
Q Consensus 619 l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~-e~~~f 697 (947)
T Consensus 295 lls~HYR-~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~f~~al~DDfnt 357 (464)
T COG0215 295 LLSSHYR-SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAEL-----A-----------DLKEFEARFREALDDDFNT 357 (464)
T ss_pred HHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----C-----------HHHHHHHHHHHHHHHCCCC
T ss_conf 9987757-765668999999999999999999988740132221-----1-----------0678999999998722580
Q ss_pred CHHHHHHHHHHH
Q ss_conf 102457776531
Q gi|254780933|r 698 NDVSAVLYRFVW 709 (947)
Q Consensus 698 ~~a~~~i~~F~~ 709 (947)
T Consensus 358 ~~al~~l~~l~~ 369 (464)
T COG0215 358 PKALAVLFELAK 369 (464)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999