HHsearch alignment for GI: 254780933 and conserved domain: COG0215

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.85  E-value=2.6e-20  Score=166.91  Aligned_cols=146  Identities=19%  Similarity=0.335  Sum_probs=112.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC-CCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf             53012455432101356777665301211337868520000144-31000122554312456530233202540344454
Q gi|254780933|r  540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHA-LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY  618 (947)
Q Consensus       540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~  618 (947)
T Consensus       222 ~DIHgGG~DLiFPHHENEiAQsea~~------g~~~~a~yWmH~G~l~-i~geKMSKSLGNfiti~d~l~~~~p~~lR~~  294 (464)
T COG0215         222 FDIHGGGSDLIFPHHENEIAQSEAAT------GVKPFAKYWMHNGFLN-IDGEKMSKSLGNFITVRDLLKKYDPEVLRLF  294 (464)
T ss_pred             CCEECCCCCCCCCCCCCHHHHHHHHH------CCCCCEEEEEECCEEE-ECCCCCCCCCCCEEEHHHHHHHCCHHHHHHH
T ss_conf             51246850255888630899987642------9976005868826452-4672765235776679999865487999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf             31233556775434110111000012344433332024445776767743331555677999999998889987-53100
Q gi|254780933|r  619 FSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM-ENHRF  697 (947)
Q Consensus       619 l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~-e~~~f  697 (947)
T Consensus       295 lls~HYR-~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~f~~al~DDfnt  357 (464)
T COG0215         295 LLSSHYR-SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAEL-----A-----------DLKEFEARFREALDDDFNT  357 (464)
T ss_pred             HHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----C-----------HHHHHHHHHHHHHHHCCCC
T ss_conf             9987757-765668999999999999999999988740132221-----1-----------0678999999998722580


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             102457776531
Q gi|254780933|r  698 NDVSAVLYRFVW  709 (947)
Q Consensus       698 ~~a~~~i~~F~~  709 (947)
T Consensus       358 ~~al~~l~~l~~  369 (464)
T COG0215         358 PKALAVLFELAK  369 (464)
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999999