HHsearch alignment for GI: 254780933 and conserved domain: COG0495
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1063.95 Aligned_cols=734 Identities=25% Similarity=0.383 Sum_probs=557.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87678978988999999987698644534548998089972844999986543788967799999876708983567788
Q gi|254780933|r 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPG 82 (947)
Q Consensus 3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G 82 (947)
T Consensus 1 ~~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~-~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG 79 (814)
T COG0495 1 MMSRYNPREIEEKWQKRWEEAKVFEADEDSDKP-EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG 79 (814)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCC
T ss_conf 976523578999999999865971068988877-7559986787888873468541210899999999856972145675
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 15454089999999976745998777798999999999999999999999998083664279811588679999999999
Q gi|254780933|r 83 TDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFV 162 (947)
Q Consensus 83 ~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~ 162 (947)
T Consensus 80 wdafGlPae~~A~~~-----~~~------------P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~ 142 (814)
T COG0495 80 WDAFGLPAENAAIKI-----GTD------------PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFL 142 (814)
T ss_pred CCCCCCHHHHHHHHH-----CCC------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
T ss_conf 566686399999985-----789------------699999999999999998087612355456479647799999999
Q ss_pred HHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC----------CCCCEEEEEEEEECCC-------CC-----------
Q ss_conf 9998894331332022037767801486865414----------6876699996530453-------00-----------
Q gi|254780933|r 163 VLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE----------VDGNLWYVRYPLVEGV-------TY----------- 214 (947)
Q Consensus 163 ~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~----------~~~~~~~ik~~l~~~~-------~~----------- 214 (947)
T Consensus 143 kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~k--it~yae~ll~~l~~l~~~wPE~Vk~ 220 (814)
T COG0495 143 KLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFK--ITDYADELLDDLDKLATLWPETVKG 220 (814)
T ss_pred HHHHCCCEEECCCCCEECCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEEEEE--ECHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99977988852554310777697615412415876557885268666899999--1342999986666542479566998
Q ss_pred --CCCCCCCCCCCCCCC-CC---CCEEEEEECCCCHHCHHHHHHHHHCCHHH------------H---------------
Q ss_conf --012455555442456-88---71699982674010102444444100012------------3---------------
Q gi|254780933|r 215 --RHPIKFDDDAKPIDW-EV---RDYIIVSTTRPETMFGDVAIAVHPDDYRY------------K--------------- 261 (947)
Q Consensus 215 --~~~~~~~~~~~~~~~-~~---~~~l~v~TtrPeTl~g~~a~~v~P~d~~y------------~--------------- 261 (947)
T Consensus 221 mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~ 300 (814)
T COG0495 221 MQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESV 300 (814)
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 98727078887589985177644100244663573116748999707866789874186516699999886178715630
Q ss_pred --------HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf --------111542332024865732100003421223203212477855656643046531110167775213665444
Q gi|254780933|r 262 --------ELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESF 333 (947)
Q Consensus 262 --------~l~G~~~~~Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~ 333 (947)
T Consensus 301 ~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~---~~~~~~ 377 (814)
T COG0495 301 PAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT---VGKKVY 377 (814)
T ss_pred ECCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCEEEEEECCCC---CCCEEE
T ss_conf 45687763113650247777886778996743145556635458888702068998528861799824887---664001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHH
Q ss_conf 55543465546555310015123344888998888764333210223222356665532444312221214542023334
Q gi|254780933|r 334 LENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIR 413 (947)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~ 413 (947)
T Consensus 378 ~~~g~-----linS~~~~gl~~e~a~~~~~~~--------------------------l~~~~~~q~~v~Y~-------- 418 (814)
T COG0495 378 EGEGV-----LINSGGLDGLDYEEAKVKIRCG--------------------------LVKRGLGQWFVNYR-------- 418 (814)
T ss_pred CCCCE-----EECCCCCCCCCCHHHHHHHHHH--------------------------HHHHCCCCEEEECC--------
T ss_conf 14745-----7625433676405679999986--------------------------88723782588514--------
Q ss_pred HHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCC--CCCCCCC
Q ss_conf 32002441121443113567641011123212354563102698389988765762344542034556787--7655541
Q gi|254780933|r 414 SAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQD--NDMTVKV 491 (947)
Q Consensus 414 ~~~~~~i~~~P~~~~~~~~~wl~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~ 491 (947)
T Consensus 419 ------------------------lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~ 474 (814)
T COG0495 419 ------------------------LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEE 474 (814)
T ss_pred ------------------------CCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------------51577899997089964547423785547367667436641146798899988836
Q ss_pred CCCCCCCCCCCCEEECCCEECCEEECCCCCCCEEC-------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 00256888831018824100220204423332010-------11110001234555301245543210135677766530
Q gi|254780933|r 492 RKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLG-------WPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYF 564 (947)
Q Consensus 492 ~~~~~~~~~~~~~~r~~DvlDtWfdSg~~p~~~l~-------~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l 564 (947)
T Consensus 475 W~~~s~~~--s~~~ret~Tm~~~~~s-swy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~hkal 551 (814)
T COG0495 475 WVIESLPD--STAYRETDTMDTFIDS-SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKAL 551 (814)
T ss_pred EEEEECCC--CCEEEEHHHHHHHCCC-CCCCHHHCCHHCCCCCHHCHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 17996699--8535323246576043-21018665810075432257887420672012263667778899999999883
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 12113378685200001443100012255431245653023320254034445431233556775434110111000012
Q gi|254780933|r 565 MKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFIT 644 (947)
Q Consensus 565 ~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~n 644 (947)
T Consensus 552 ~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~ 631 (814)
T COG0495 552 FDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQ 631 (814)
T ss_pred CCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHH
T ss_conf 47577877650444411426874277704544578889899999958409899998608775378877456489999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 34443333202444577676774333155567799999999888998753-10010245777653100136889864765
Q gi|254780933|r 645 KFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMEN-HRFNDVSAVLYRFVWDELCDWYVEFIKSI 723 (947)
Q Consensus 645 KLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~-~~f~~a~~~i~~F~~~~~~~~Yie~~K~~ 723 (947)
T Consensus 632 r~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~-l~~~~~~~~~- 700 (814)
T COG0495 632 RVWNLVKEHLEKL-----VEELTKEQGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-A-LRKYLRRTEG- 700 (814)
T ss_pred HHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHCCC-
T ss_conf 9999999864023-----3335530568899999999---99999999999889999999999999-9-9998750232-
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 30567144432100014567640345677448999999974356667675653663578787747789899999999999
Q gi|254780933|r 724 LNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDLI 803 (947)
Q Consensus 724 l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~~d~~~~~~~~~~~~ii 803 (947)
T Consensus 701 ----~~-------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~------~~~v~~~~wP~~d---e~~l~~~~------ 754 (814)
T COG0495 701 ----DR-------KVLREALETWVRLLAPFAPHIAEELWEELGN------EGFVSNAPWPEPD---EEALVEDE------ 754 (814)
T ss_pred ----HH-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC------CCCEEECCCCCCC---HHHCCCCE------
T ss_conf ----07-------8999999999999666664779999999669------9816417899877---34416550------
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEE
Q ss_conf 99998889808997774659996499899999999899999832461587114888737999
Q gi|254780933|r 804 SKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADCPPDRSIQII 865 (947)
Q Consensus 804 ~~iR~~R~~~~i~~k~~i~i~~~~~~~~~~~~l~~~~~ii~~L~~~~i~~~~~~~~~~~~~v 865 (947)
T Consensus 755 ---~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~v~~~l~~~~~~k~i~VP~k~vn~v 813 (814)
T COG0495 755 ---VEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTIKKVIAVPGKPVNIV 813 (814)
T ss_pred ---EEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCEEEE
T ss_conf ---59999980289789997477987899999862388999876788514896499614886